SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14259  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008164
Annotation
low_molecular_mass_30_kDa_lipoprotein_19G1-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.679 Extracellular   Reliability : 1.105
 

Sequence

CDS
ATGCTAACTAGCTCCAGCCCTTCACAGGTAAAAACACCGTCAGAGGCAGAATGGGAAGCCGCCTCTGAGCCAGACTACGACACAAATGAGGACCTGTTGTATGCGTACTCCCCAATACCCTACTTCGGTATGTACCACCTCGTGAAGATCCCGATCGACAGAGGGCTGGTACACCAAGTCGATTACTGGGGAGAAGGAAAAGTGACTAACCTTGACAAGATAAGAGGCTTCCCTCGGAGCTACAATGTGAACGAACAGTTTGCGCTCGTCAGTAAGGGCCACAACGAGGGAAAGCAAATACCCAACAGGATCCCCGTCGTGTCCGTGGACGACAGCGACACTTCCAGTTACATCAGAGACGGCAGCGTCAAAACTGTTACCATCAGCACGGGGCCGATCACTAAGCGTTGCGCTGCAGACGTCGCCAGGATTGTCAACGCGTCCGAAGGACTCGTCGTTGCCTACGGATATTCTGACAATTCTGACGACATCCAAAATCTCGAGCGTGAGCTTGGCAAAAACGGCTTATACTATGGAGCCGGGTACGAACTACCCGCAGACTTGAAGACCCAGACGGCATTCAGCACGAAGATGGTCTTTGCCGACGCAACGTCAATCAACAATCACTTGTACGACTTGGTTACGGGCGGCGACTACATCAACGCGGTGAAGACTGTGCGCAGTCTCGTCGACAACCAGGGCTCCGACGTCTGTCGCGACGTCGTCTCGCGGCTCGTCTCGCAGGGCATCAAGAACACCATGTCGTTCGCGTACAAGCTGTGGCACGAGGGCCACAAGGACATCGTCGAAGATTACTTCCCGAGCGAATTCCAACTCATACTCGACCAACAGATAATTAAGCTCATCGGCAAACATTACAATCAAGCTCTCAAACTGGATGCTAACGTTGGCGAGTACAACGACCGCCTAACCTGGGGAGACGGAAAAGACTACACCAGCCACCATGTCAGCTGGCGACTCATCTCTCTTTGGGAAAACAACAACGTGATATTCAAGATACTGAACACCGAATACGAGATGTACTTGAAACTGGACGTGAACGTGGATAGTTACGGCGACAGGAAGACCTGGGGATCGAACGGTTCCAGTGAGAAGAGACACACCTGGTCTTTATACCCGGTAAAGGTGGGAGACCAACAGCTGTTCCTCATCGAGAACCGGGAGTACCGGCAGGGACTGAAGCTGGACGCGAACGTGGACTCATACGGGGACCGCCTTGTGTGGGGGAGCAACGGGACAGTCGCCGACAACCCCGAGTACTACGGCTTCATAATCCAGCCGTGGCAGTGA
Protein
MLTSSSPSQVKTPSEAEWEAASEPDYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHQVDYWGEGKVTNLDKIRGFPRSYNVNEQFALVSKGHNEGKQIPNRIPVVSVDDSDTSSYIRDGSVKTVTISTGPITKRCAADVARIVNASEGLVVAYGYSDNSDDIQNLERELGKNGLYYGAGYELPADLKTQTAFSTKMVFADATSINNHLYDLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSRLVSQGIKNTMSFAYKLWHEGHKDIVEDYFPSEFQLILDQQIIKLIGKHYNQALKLDANVGEYNDRLTWGDGKDYTSHHVSWRLISLWENNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGDQQLFLIENREYRQGLKLDANVDSYGDRLVWGSNGTVADNPEYYGFIIQPWQ

Summary

Pfam
PF03260   Lipoprotein_11
Interpro
IPR004943   Lipoprotein_11        + More
IPR042046   Lipoprotein_11_N       
Gene 3D
PDB
3PUB     E-value=6.46441e-41,     Score=421

Ontologies

Topology

Length:
436
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00964999999999999
Exp number, first 60 AAs:
0.00951
Total prob of N-in:
0.00242
outside
1  -  436
 
 

Population Genetic Test Statistics

Pi
15.199119
Theta
2.558413
Tajima's D
-0.44897
CLR
2.454463
CSRT
0.262936853157342
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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