SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14257  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008165
Annotation
30K_protein_19_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.454
 

Sequence

CDS
ATGATGGATCCACAGGACAAGCTCCCCAACTACGTGACCAACGTGGACCTGAAGTATCCGTACTCAGACCTGCCGTACATAGGGCAGTACAAGCTGCTCAAGCTCCCCTTCACTGGAAAGCTGATCGAGCATGTTGACTACTGGGGCGAGGGGAGTATCGTCAACGGGGGACTGTATTCGGGCTTCCGCAACTGCTACAACGTGAACCGACAGTACCAAGAGGTCAGCAACGGGCCCGACATGGGTCGCAAGATCCCCAACAGGATCCCGGTGCGCGACGAAAACGACTGCGACACCCGGGCTTACATCAAGGATGACTCGGTCAAAATAGTGACGCTCATGAGCGCGCCCATCATTCCGAACAGCGCCAGAGACATTACGAGAATCGTTAACGAGCGCGTCGGCATGGTCGTCATCTACGGCATGCCGGTAGAGTCTCAGGGTATTAAGCTCCTGGCTGCCGAGCTAAAGAGCAAGCTTCTGCTGTACTGTCCCGACTACGAGCTGCCCGATTACTTACAGGAACCTACAATGATGGACTCGCACGTGGCTTTCCTCAACAAGCAACTTCTTATGGATCTGCTTTTCAAGTGCGTGTCGACCGGGGACTACGACAAGGCAGTGACTATCACGAAGTCATTGCAAGATGATAACGTCGGTTTTATGATCGAGGAGCTGATCGACAGACTCTTGCGCGCACGAGAACCTAACGTGTTCGCATACGCGGACAAGTTGTGGTCCGCCGGACACCACGATATAGTCAATGACTTTTTCCCTTCGGAAATCAAATTGATCACCAAGCAAGAAAGGGTGAAAATCATCGGAAGATATTACAATCAAGCTCTGAAGCTGGACTCCAATGTCGACTCGTACAACAACCGCCTGGCCTGGGGAGACAGCAAGGACAAGATTAGTCACAGAGTGAGCTGGAAGTTTATCCCGGTATGGGAGAATAACAAGCTGCTGTATAAAATATTGAATACTGAATATACTATGTACCTGAAGCTGGACATGAACGTAGAAGAGTACGGAGACAGGAAAGCGTGGGGTTCCAACAACTCGAACGAGAAAGGCCATCTGTGGAAGCTGACGCCTGTAGTGCTGGAGACCGGCAACGTCTTACTCATAGAGAACCACGAGTACGGGCAGAGTCTGAAGCTGGACGCGCACGTGGACAGCTACGGCGACCGCCTGCTCTGGGGAAACAATGGAAACGTCGATGGTAATCCTGGGTACTTCGGCTGGGTCATCAACGCGTGGCAGTAG
Protein
MMDPQDKLPNYVTNVDLKYPYSDLPYIGQYKLLKLPFTGKLIEHVDYWGEGSIVNGGLYSGFRNCYNVNRQYQEVSNGPDMGRKIPNRIPVRDENDCDTRAYIKDDSVKIVTLMSAPIIPNSARDITRIVNERVGMVVIYGMPVESQGIKLLAAELKSKLLLYCPDYELPDYLQEPTMMDSHVAFLNKQLLMDLLFKCVSTGDYDKAVTITKSLQDDNVGFMIEELIDRLLRAREPNVFAYADKLWSAGHHDIVNDFFPSEIKLITKQERVKIIGRYYNQALKLDSNVDSYNNRLAWGDSKDKISHRVSWKFIPVWENNKLLYKILNTEYTMYLKLDMNVEEYGDRKAWGSNNSNEKGHLWKLTPVVLETGNVLLIENHEYGQSLKLDAHVDSYGDRLLWGNNGNVDGNPGYFGWVINAWQ

Summary

Pfam
PF03260   Lipoprotein_11
Interpro
IPR004943   Lipoprotein_11        + More
IPR042046   Lipoprotein_11_N       
Gene 3D
PDB
3PUB     E-value=8.05312e-41,     Score=420

Ontologies

Topology

Length:
421
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01207
Exp number, first 60 AAs:
0.00178
Total prob of N-in:
0.00490
outside
1  -  421
 
 

Population Genetic Test Statistics

Pi
147.803255
Theta
166.032512
Tajima's D
-0.833544
CLR
19.987971
CSRT
0.167291635418229
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
26280517 IPMADVPTVVR 100.00 1e-05
24402669 IPNQDFVVFQEYR 100.00 1e-05
29197581 YYNQAIK 100.00 1e-05
20822545 SLQDDNVGFMIEELIDR 100.00 2e-05
20822545 YPYSDLPYIGQYK 100.00 5e-05
26280517 VGIIGSCTNSSYEDMGR 100.00 5e-05
25044914 VGKPVICATQMIESMVK 100.00 5e-05
28467696 VGMDDAGVYTITAK 100.00 5e-05
29197581 ITPVVIETGNVIIIENHEYGQSIK 100.00 5e-05
20822545 VGMVVIYGMPVESQGIK 100.00 6e-05
20822545 QYQEVSNGPDMGR 100.00 6e-04
24402669 MVVIVDPHIK 100.00 0.001
20822545 ILNTEYTMYLK 100.00 0.007
26280517 NKIPADIVFIIR 100.00 0.007
24402669 QYPIPAIHPNIYDNIMVSISAAAR 100.00 0.007
28467696 QYNTPVNIYSDK 100.00 0.007
29197581 IVTIMSAPIIPNSAR 100.00 0.007
20822545 IVTLMSAPIIPNSAR 100.00 0.012
26280517 IPVAVATTSTPKSDSINVVR 100.00 0.015
28467696 IPVIAATIYR 100.00 0.015
29197581 IPNRIPVRDENDCDTR 100.00 0.015
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