SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14254
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.546
 

Sequence

CDS
ATGTACCGCACACCGACAACCTCCGGCGCTGCCAGAAAACCTGGTTCCTCCAGCCCCACTGCAACCCCATCTGCACCAGCGCAGGACGCTGCAAAAACTTTTATCCGGAGACCAGACCGGAAAAGAAGATCACTGGATAATATGGCGATATACAACAAGCATATAGAGGACTACGCGGTGAAACCGAGTGACGCGCTCCTCCAGGAGGTGATGAAGACCTTTGAGGACATTCCAGCGAAAGTCCAAGAATACCCTCAAATGAGGAAAGATATAAAGACCTTCCTGGAGGGGCAGTCTGATAAGTGCCTCCGTATCTTGTTTGAATTAAGCAAGCGAGTGACATGTTTGGAAGCAACAGCAACCAAAACGCGGTCGCCCCGTACAGCCAGATCGCCCGAAAAAGACGACGTCCACATCTTAGAAAAGTTGGGGGAAGTGGAAAACCTGGTACAAAAGCGACTGAATGAGTTGGAAAGTAGGATGCTAGCATGCTTCGACGACCAAATCAGGCTTCAAAATGATGACTGCGCCGACATGGTCCGCAAGATTGGCAATAAAATCGATGACGCTAAAGCGGCCATTGACCACACAACAGAGGGTGTCAGGATCGCTCATCGATCCCAAATAATTCTTGATGAGAAACTCGACAATATTGCGGGGAATGTGGCGGCCGTTAATGCAACAGTGATTGAGGTCGCAAAAAATAAGCAGCCATGCGAAGCTAAGACCTACGCTAGCGTCGCAGCAGCCAAGCCCGGGCATCGGCCGGCACTACACTCGATGGCGGTCACCCTCGAAGGCAGTCAGGAGACTGCCGACGAGGTGCTTGAGAGAGTGAGGAAGGCGGTCGATGCCAGGGGTACTGGCCTGAAAATAAGCAAGGTGCGCAAAGCAAAAAACCAAACAGTTATTTTAGGGTGTGACACCGAAGCGGAACTATACAAGGTGAAAGAAACAATTGAAAGCCGGGGGGAGGGCTTAATTGTTTTCCGTATGAAAAATAAAAACCCGCTTGTCATCCTAAAAGATGTCTTCCTCCCGAGTGACGACGAGGAGATAATTAAAGGGCTACATATTCAAAACGAGGATATATTTAGGGACTTGTCTCAGGAAGATAAAGAAATGACCATAAAGTTCAAGAAGAGGACAAAAAATCCCAAAACGGCGCACGTCATTGTCCAGGTTGGTCCCGTGGTATGGCAGAGGATGACGGAGGCTGGGGCCCTCTACCTGGACCTGCAAAGGATCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAGAAATGCGCAGACTTCATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCCGAATGCCCGATACGAAAAAAGTGGGATTACTTGGCTCGCGCTAACACAACATATGCATAA
Protein
MYRTPTTSGAARKPGSSSPTATPSAPAQDAAKTFIRRPDRKRRSLDNMAIYNKHIEDYAVKPSDALLQEVMKTFEDIPAKVQEYPQMRKDIKTFLEGQSDKCLRILFELSKRVTCLEATATKTRSPRTARSPEKDDVHILEKLGEVENLVQKRLNELESRMLACFDDQIRLQNDDCADMVRKIGNKIDDAKAAIDHTTEGVRIAHRSQIILDEKLDNIAGNVAAVNATVIEVAKNKQPCEAKTYASVAAAKPGHRPALHSMAVTLEGSQETADEVLERVRKAVDARGTGLKISKVRKAKNQTVILGCDTEAELYKVKETIESRGEGLIVFRMKNKNPLVILKDVFLPSDDEEIIKGLHIQNEDIFRDLSQEDKEMTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSAECPIRKKWDYLARANTTYA

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       
ProteinModelPortal

Ontologies

Topology

Length:
507
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00085
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00579
outside
1  -  507
 
 

Population Genetic Test Statistics

Pi
0.09403
Theta
0.741235
Tajima's D
-1.299086
CLR
173.802745
CSRT
0.0890955452227389
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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