Gene

KWMTBOMO14248

Pre Gene Modal

BGIBMGA011161

Annotation

sid-1-related_gene1_precursor_[Bombyx_mori]

Location

Bomo_Chr23(+):21344973-21353997      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.772

CDS

ATGTCTTTTATAGACATCACAAAAGACACGAGGTTGAAGTCTCAATGGGGACCGCCGACACCAGAGTGTTTACGCGGCGCTGTGCCACTTGCAGAGGAGGTGACCGTCGTGGTGGAGGAGAGCTCGCCGTCGACGTCACGGGAGGACAGCGCGGAGACGGACACGCAGCCCATACTGGAGGCGGGTGCCGCCGATGAGTCTTGGTCGCGGGAGCACGCCCTGACAGTCGGCAAGCTGACGCGGGCCCCGCCCGACACGCTGGCCAGGAGATCAGACAGGTACTTCTGGGGCGCCCTGACGCTGGCGGTGGTGTACGCGCTGCCCGTGGTGCAGCTGCTGCTCACGTACCAGCGCATGGTGTTCCAGACCGGCGACCAGGACCTGTGCTACTACAACTTCCTGTGCGCCCACCCGCTCGGCACGCTCTCGGACTTCAACCACGTGTTCTCCAACGTCGGCTACGTGCTGCTCGGCGCCGTGTTCGCGGGCCAGGTCCGCTTCAGGCAGGTCAAGAGCAGGCAGCGGCCCGAGAACTTGGGCATCCCCCAGCACTACGGGCTGCTGTACTCGATGGGCCTGGCCCTCAGCATGGAGGGCCTCCTGTCGGCCTGCTACCACCTCTGCCCTAACAAAATGAACTTCCAATTTGACTCGTCGTTCATGTACGTGATAGCCGTGCTGGTCACACTCAAGCTGTACCAGAACAGGCACTCCGACATCATTCCGAGCGCGCACTCCACCTTCATGATCCTGGCCGTCATCATGACGATCGGCTTGTTCGGGATCCTGCACCCCAGCGCGGGGTTCGCGGCCAGCTTCACGCTGCTGCACCTGGGGGCGTGTCTGGTGCTCACACTCAAGATATACTACGCCGGGAGGTTCAAAATGGACCGGCGCGTGCTCCTGCGCGCGTACGCGCACGTGGCGGCGCGCGGCTGGCGGTCGCTGCTGCCCGCGCACCCCTACCGCGCCGGCCTGCTGGGCCTCGCCAACCTGGCCAACTGGTCGCTGGCGGGATACAGCGTCTACTCGCACCACAACACAGATTTGGCAAGACAGCTCCTCGCTATTCTCATGGGCAACGCCATTCTGTACACCATGTTTTATATGGTAATGAAACTGGTGAACCGAGAGAGGATCCTGGCCAGGACCTGGATGTACTGTATCCTGGCCCACGTGGCCTGGTTCTTGGCCCTGCGACTGTTCTTGGACTCGAAGACCAAGTGGTCGGAAACTCCGGCGCAGTCCCGGCAGCACAACGCGCCGTGCTCCTCGCTGTCTTTCTACGACACGCACGACCTTTGGCACGGCGTCTCCGCGGCAGCCCTGTTCCTGTCCTTCAACATGCTGCTGACCATGGACGACGCGCTGCGGGATACCCCGAGGGACCAAATACCCACGTTTTGA

Protein

MSFIDITKDTRLKSQWGPPTPECLRGAVPLAEEVTVVVEESSPSTSREDSAETDTQPILEAGAADESWSREHALTVGKLTRAPPDTLARRSDRYFWGALTLAVVYALPVVQLLLTYQRMVFQTGDQDLCYYNFLCAHPLGTLSDFNHVFSNVGYVLLGAVFAGQVRFRQVKSRQRPENLGIPQHYGLLYSMGLALSMEGLLSACYHLCPNKMNFQFDSSFMYVIAVLVTLKLYQNRHSDIIPSAHSTFMILAVIMTIGLFGILHPSAGFAASFTLLHLGACLVLTLKIYYAGRFKMDRRVLLRAYAHVAARGWRSLLPAHPYRAGLLGLANLANWSLAGYSVYSHHNTDLARQLLAILMGNAILYTMFYMVMKLVNRERILARTWMYCILAHVAWFLALRLFLDSKTKWSETPAQSRQHNAPCSSLSFYDTHDLWHGVSAAALFLSFNMLLTMDDALRDTPRDQIPTF

Uniprot

A9CQK8   V9VIE0   A0A194PYX2   A0A2W1B6M8   A0A194RII4   A0A2A4JHF6   + More
A0A059VQN8   A0A2H1VGM1   A0A0N1I3U4   A0A3S2M533   A0A194PSM1   V9VLL3   A0A2A4IUB4   A0A212EWM8   A0A1E1VYU1   A9CQL3   A0A1Y1KTV8   A0A067R6J9   A0A2J7RDI9   A0A2J7RDK3   A0A2J7RDJ6   A0A2J7RDJ2   K9LY69   X2J861   D2A688   A0A195D4C4   A0A3L8DPV3   A7YFW2   F4WVP0   A0A158NHH5   A0A2R2MI98   A0A195E268   A0A290WIE4   A0A212F5T8   A0A151XFE4   A0A1W4WGG4   E2B9B2   A0A2R2MIQ4   A0A2R2MIB4   A0A0N9JWV7   A0A1B6JLN8   E9FVT5   A0A195AUK3   N6TBL6   U4U416   A0A164Z745   A0A1S3D562   A0A0P5F721   A0A0P5BJI6   V4BXN2   A0A026WB92   A0A0P6FBP5   A0A0P5MRA9   A0A0N8CLE5   A0A0P6IH87   A0A0P5U391   A0A0P5NAM2   A0A0P5VBA3   A0A088AD51   A0A0P5CVW6   A0A0P5MM69   A0A0P6EGL7   A0A0P6G2C9   A0A0P6IKU6   A0A0P5V545   A0A0N8BIT8   A0A0P5MSQ1   A0A0P6G2A2   A0A0N8ECR5   A0A0P6BDM9   A0A0P5S1J9   A0A0P5R7U4   A0A0P6GXX9   A0A0P6J0Q0   A0A0P6BS31   A0A0P5EPL1   A0A0P5V5S3   A0A0N8C2G0   A0A0P5REJ7   A0A232EXE9   A0A0P5VDZ2   A0A0P6EVM5   A0A0P4YM49   A0A0P4ZBP9   A0A0P5B8N0   E0VXD3   A0A0N8ERB7   A0A0P6DLZ4   A0A0P5F1T1   A0A0P5U374   A0A0P6GPB8   A0A0P6FV82   A0A0P5G7B5   A0A0N8CCE1   A0A0P5IHR2   A0A0P5RQE3   A0A0P5SBY3   A0A0P6BIW4   A0A0P5ID48  

Pubmed

18201385    26354079    28756777    22118469    28004739    24845553    + More
24528536    18362917    19820115    30249741    21719571    21347285    20798317    21292972    23537049    23254933    24508170    28648823    20566863   

EMBL

AB327183    BAF95805.1    KF717089    AHC98014.1    KQ459593    KPI96355.1    + More
KZ150434    PZC70881.1    KQ460152    KPJ17372.1    NWSH01001370    PCG71505.1    KF561252    AHZ97882.1    ODYU01002469    SOQ40003.1    KQ458887    KPJ04577.1    RSAL01000031    RVE51591.1    KPI96307.1    KF717088    AHC98013.1    NWSH01007994    PCG62730.1    AGBW02011924    OWR45910.1    GDQN01011200    JAT79854.1    AB327185    BAF95807.1    GEZM01078212    GEZM01078211    JAV62846.1    KK852663    KDR19041.1    NEVH01005288    PNF38903.1    PNF38905.1    PNF38902.1    PNF38907.1    JN676095    AFQ00936.1    KJ135007    AHN55087.1    KQ971346    EFA05674.2    KQ976870    KYN07738.1    QOIP01000005    RLU22272.1    EF688529    ABU63674.1    GL888393    EGI61710.1    ADTU01015824    KQ979763    KYN19245.1    KX965609    ATD50470.1    AGBW02010130    OWR49102.1    KQ982194    KYQ59051.1    GL446479    EFN87718.1    KR153285    ALG36907.1    GECU01007611    JAT00096.1    GL732525    EFX89048.1    KQ976737    KYM75918.1    APGK01036719    APGK01036720    APGK01036721    KB740941    ENN77664.1    KB632001    ERL87797.1    LRGB01000779    KZS16020.1    GDIQ01267010    JAJ84714.1    GDIP01187914    JAJ35488.1    KB201890    ESO93839.1    KK107293    EZA53362.1    GDIQ01059053    JAN35684.1    GDIQ01154612    JAK97113.1    GDIP01120287    JAL83427.1    GDIQ01022015    JAN72722.1    GDIP01120282    JAL83432.1    GDIQ01151765    JAK99960.1    GDIP01104586    JAL99128.1    GDIP01164774    JAJ58628.1    GDIQ01154615    JAK97110.1    GDIQ01075641    JAN19096.1    GDIQ01039552    JAN55185.1    GDIQ01002823    JAN91914.1    GDIP01120292    JAL83422.1    GDIQ01173555    JAK78170.1    GDIQ01151764    JAK99961.1    GDIQ01039550    JAN55187.1    GDIQ01039548    JAN55189.1    GDIP01017762    JAM85953.1    GDIQ01093532    JAL58194.1    GDIQ01106429    JAL45297.1    GDIQ01039551    JAN55186.1    GDIQ01001530    JAN93207.1    GDIP01017763    JAM85952.1    GDIQ01267009    JAJ84715.1    GDIP01104590    JAL99124.1    GDIQ01121379    JAL30347.1    GDIQ01121378    JAL30348.1    NNAY01001757    OXU23015.1    GDIP01101684    JAM02031.1    GDIQ01057399    JAN37338.1    GDIP01225325    JAI98076.1    GDIP01215517    JAJ07885.1    GDIP01187920    JAJ35482.1    DS235830    EEB18039.1    GDIQ01001532    JAN93205.1    GDIQ01075640    JAN19097.1    GDIQ01267005    JAJ84719.1    GDIP01120291    JAL83423.1    GDIQ01108725    GDIQ01030617    JAN64120.1    GDIQ01042304    JAN52433.1    GDIQ01267006    JAJ84718.1    GDIQ01093531    JAL58195.1    GDIQ01214145    JAK37580.1    GDIQ01106431    JAL45295.1    GDIQ01106430    JAL45296.1    GDIP01028443    JAM75272.1    GDIQ01214144    JAK37581.1   

Proteomes

UP000053268    UP000053240    UP000218220    UP000283053    UP000007151    UP000027135    + More
UP000235965    UP000007266    UP000078542    UP000279307    UP000007755    UP000005205    UP000085678    UP000078492    UP000075809    UP000192223    UP000008237    UP000000305    UP000078540    UP000019118    UP000030742    UP000076858    UP000079169    UP000030746    UP000053097    UP000005203    UP000215335    UP000009046   

PRIDE

A9CQK8    A9CQL3   

Pfam

PF13965   SID-1_RNA_chan

Interpro

IPR025958   SID1_TM_fam       

ProteinModelPortal

A9CQK8   V9VIE0   A0A194PYX2   A0A2W1B6M8   A0A194RII4   A0A2A4JHF6   + More
A0A059VQN8   A0A2H1VGM1   A0A0N1I3U4   A0A3S2M533   A0A194PSM1   V9VLL3   A0A2A4IUB4   A0A212EWM8   A0A1E1VYU1   A9CQL3   A0A1Y1KTV8   A0A067R6J9   A0A2J7RDI9   A0A2J7RDK3   A0A2J7RDJ6   A0A2J7RDJ2   K9LY69   X2J861   D2A688   A0A195D4C4   A0A3L8DPV3   A7YFW2   F4WVP0   A0A158NHH5   A0A2R2MI98   A0A195E268   A0A290WIE4   A0A212F5T8   A0A151XFE4   A0A1W4WGG4   E2B9B2   A0A2R2MIQ4   A0A2R2MIB4   A0A0N9JWV7   A0A1B6JLN8   E9FVT5   A0A195AUK3   N6TBL6   U4U416   A0A164Z745   A0A1S3D562   A0A0P5F721   A0A0P5BJI6   V4BXN2   A0A026WB92   A0A0P6FBP5   A0A0P5MRA9   A0A0N8CLE5   A0A0P6IH87   A0A0P5U391   A0A0P5NAM2   A0A0P5VBA3   A0A088AD51   A0A0P5CVW6   A0A0P5MM69   A0A0P6EGL7   A0A0P6G2C9   A0A0P6IKU6   A0A0P5V545   A0A0N8BIT8   A0A0P5MSQ1   A0A0P6G2A2   A0A0N8ECR5   A0A0P6BDM9   A0A0P5S1J9   A0A0P5R7U4   A0A0P6GXX9   A0A0P6J0Q0   A0A0P6BS31   A0A0P5EPL1   A0A0P5V5S3   A0A0N8C2G0   A0A0P5REJ7   A0A232EXE9   A0A0P5VDZ2   A0A0P6EVM5   A0A0P4YM49   A0A0P4ZBP9   A0A0P5B8N0   E0VXD3   A0A0N8ERB7   A0A0P6DLZ4   A0A0P5F1T1   A0A0P5U374   A0A0P6GPB8   A0A0P6FV82   A0A0P5G7B5   A0A0N8CCE1   A0A0P5IHR2   A0A0P5RQE3   A0A0P5SBY3   A0A0P6BIW4   A0A0P5ID48  

KEGG

100134917    no KO assigned | (RefSeq) Sir-1; sid-1-related gene1

GO

GO:0033227   GO:0016021   GO:0051033   GO:0005764   GO:0005886   GO:0003725   GO:0050658   GO:0003677   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR12185  

Length:

468

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

199.0465

Exp number, first 60 AAs:

0

Total prob of N-in:

0.98998

inside

1  -  93

TMhelix

94  -  116

outside

117  -  147

TMhelix

148  -  165

inside

166  -  240

TMhelix

241  -  263

outside

264  -  267

TMhelix

268  -  290

inside

291  -  353

TMhelix

354  -  371

outside

372  -  380

TMhelix

381  -  403

inside

404  -  468

 

 

Pi

17.728115

Theta

3.607239

Tajima's D

0.320336

CLR

0.807617

CSRT

0.496175191240438

Interpretation

Uncertain