Silkworm Genome Informatics Database

Gene

KWMTBOMO14243

Pre Gene Modal

BGIBMGA011102

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_protein_son_of_sevenless_[Bombyx_mori]

Location

Bomo_Chr23(-):21309618-21316222 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.825

CDS

ATGACCTCGCACGTCGAATGTGGTACATGTGTATGGGTGAGGTCGCTCGACGAGCGGGGGGGATCAGTGCTGGGAGTGCCTAAAGCACCGAGAGGGAACCGGGAGGGTCCGATAGGTTTCGGAGGTGGTGCGCGGTTGGACATCGCCTGCCCCCTTACAGTAATACCTAAAGGTTTCCTCTTGTCTCTTGCGCGATATAAAAACATCTATATTTTCAAGGTAAAACCATCCGAGCTGGTCGGCGCCGTGTGGACGAAAAAAGACAAGGAGAAGACTAGCCCTAACCTGTTGAAGATTATAAAGCATACGACCAACTTCACGCGCTGGATGGAGAAGTGGATAGTGGAGAGCGAGAACCTGGAGGAGCGCGTGGCGGTGGTGTGCCGCGTGCTGGAGCTGGGCGTGGCGCTGCTGCACCTCAACAACTTCAACGGCGTGCTGGCCGTCGTAGCCGCCGCCGGCAGCGCCTCCGTGCACAGACTCCGGGCCACCTTCCAGTTGATTCCTCTCCGCCTGCAAAAATACCTCGAGGAGCTCCGGGAGCTGAACACAGATCACTTCCGGAGATACCAGGAGAGGCTGAGGAGTATCAACCCTCCGTGCGTCCCCTTCTTCGGCATGTACCTCACCAACATCCTGCACATCGAGGAGGGGAACCTGGACTACCTTCCAAATTCCGAATTAATAAATTTCTCGAAGCGAAGAAAAGTGGCGGAGATCACGGGCGAGATCCAGCAGTACCAGAACCAGCCCTACTGCCTCACCGTGGAGCCCAGGACCAGGGCATTCCTGGAGTCGCTGGACCCGTTTCCCGGGAAAGACGACATCGAGATCACAAATTATCTGTACAACAAAAGTCTGGAAATAGAGCCCCGGCCGCCGGTCAAACAGATGCCGAAGTATCCCAGGAAGTACCCGGACCTGTCGCTGAAGCAGGTGAAGGCCAGCCGGAGGAACCAGCACGACCACTCCACCTGCGACGACAACCTCAGCGTGTCGCAGCTGTCCCCCACGGGCAGCTCGTGGGACGGCGCGTCGGTGGCGTCGCTGCCCATGCACCACGACGACCACAGAGGCGGCAGGGCGGAGGCCGGCAGCCCCAAGGCCGACGCGCGCTCGCTCAGCCAGCTCAGCCTCTTCGACAAGAAGCTCAGTCTGTTCGACAAGGGCAGGAGCCACAGGAACAGCGAGCCGCCCTCCCCCAGGGACAAGCACTCCCCCAGGCACGACCGGCCGGCGCCCGTCGAGAGAAAACCACAGAACTTATCGCCGCGGAACCCCATCGTCGACGCCGACTCCTTCTACACGAGCCGACACAGCCTCGAGCTCGGCGCCAGGAAGCACGAGAGTAAAGAGGAGAGCGTGCCCCCCCTTCTGCCGCGACACAGCGAGCCACCCCCAGCCCCGCCGCGCCGGATAGACACCCACCATGCGGCGCCGGGCGAGCAGCCGCCGGAGCCCCCGGACCGGCCGCAGCCCAGCCCCCAGCACTGCGAGCTCCTCAGGTGA

Protein

MTSHVECGTCVWVRSLDERGGSVLGVPKAPRGNREGPIGFGGGARLDIACPLTVIPKGFLLSLARYKNIYIFKVKPSELVGAVWTKKDKEKTSPNLLKIIKHTTNFTRWMEKWIVESENLEERVAVVCRVLELGVALLHLNNFNGVLAVVAAAGSASVHRLRATFQLIPLRLQKYLEELRELNTDHFRRYQERLRSINPPCVPFFGMYLTNILHIEEGNLDYLPNSELINFSKRRKVAEITGEIQQYQNQPYCLTVEPRTRAFLESLDPFPGKDDIEITNYLYNKSLEIEPRPPVKQMPKYPRKYPDLSLKQVKASRRNQHDHSTCDDNLSVSQLSPTGSSWDGASVASLPMHHDDHRGGRAEAGSPKADARSLSQLSLFDKKLSLFDKGRSHRNSEPPSPRDKHSPRHDRPAPVERKPQNLSPRNPIVDADSFYTSRHSLELGARKHESKEESVPPLLPRHSEPPPAPPRRIDTHHAAPGEQPPEPPDRPQPSPQHCELLR

Uniprot

H9JNJ8 A0A194PSE2 A0A2W1BV33 A0A194RMZ5 A0A212F5U9

Pubmed

19121390 26354079 28756777 22118469

EMBL

BABH01035229 BABH01035230 BABH01035231 BABH01035232 KQ459593 KPI96356.1 + More
KZ149990 PZC75613.1 KQ460152 KPJ17371.1 AGBW02010130 OWR49103.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000007151

PRIDE

H9JNJ8

Pfam

PF00621   RhoGEF        + More
PF00617   RasGEF
PF00125   Histone
PF00618   RasGEF_N

Interpro

IPR019804   Ras_G-nucl-exch_fac_CS        + More
IPR011993   PH-like_dom_sf
IPR000651   Ras-like_Gua-exchang_fac_N
IPR007125   Histone_H2A/H2B/H3
IPR000219   DH-domain
IPR009072   Histone-fold
IPR036964   RASGEF_cat_dom_sf
IPR008937   Ras-like_GEF
IPR023578   Ras_GEF_dom_sf
IPR035899   DBL_dom_sf
IPR001895   RASGEF_cat_dom
IPR001849   PH_domain
IPR002119   Histone_H2A

SUPFAM

SSF48366   SSF48366        + More
SSF48065   SSF48065
SSF47113   SSF47113

Gene 3D

1.10.20.10 1.10.840.10 1.20.900.10 2.30.29.30

CDD

cd00155  RasGEF
cd00160  RhoGEF
cd06224  REM

ProteinModelPortal

H9JNJ8 A0A194PSE2 A0A2W1BV33 A0A194RMZ5 A0A212F5U9

PDB

1XDV E-value=1.53712e-74, Score=712

KEGG

101736570 K03099 son of sevenless | (RefSeq) protein son of sevenless

GO

GO:0005089 GO:0046982 GO:0035023 GO:0003677 GO:0000786 GO:0007264 GO:0005634 GO:0005085 GO:0008270 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR23113

Length:

502

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.85286

Exp number, first 60 AAs:

0.16809

Total prob of N-in:

0.07134

outside

1 - 502

Pi

6.383497

Theta

7.697207

Tajima's D

0.114782

CLR

0.560118

CSRT

0.420378981050947

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics