Silkworm Genome Informatics Database

Gene

KWMTBOMO14240 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011104

Annotation

Ribosomal_RNA_processing_protein_1-like_[Papilio_xuthus]

Location

Bomo_Chr23(-):21288849-21294862 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.317

CDS

ATGAAATTAAACGAGAAAGACAAAAAAAGAAAACAAAAACTCAAAGATAAAATAGTTAAAACTAAAAAGGAACAAGTTGCGGTCGTTGCCCAGGAGATAAAGTTCGCGCGTTTGTTATCCGGAAACGAAAACAAAGTACGCGAACGTGTGATTAAAACACTGAAAAAGTGGCTCCAGAATTGTTTTCACAGGGGATACGAATTCAAAGAAGATGATTTCACGAGAGTGTGGAAGGGTATATTTTACGCGATGTGGATGTCGGATAAGCCACTTGTACAAGAAGACCTAGCGGAGAATATAGCAGGCATCCTGGATCATTTTCCACCAGAACATCTTCATCATGCAATGCTTATGACAAAGGCTGGCTTCAAGGTGTTGGCCACGGAGTGGTTTGGAATCGATCAACATAGAATTGATAAATTTCTTATGCTTGCCCGTAGATATTTACGTGGGAGTATCCGGTGTCTGCAACGTTGTGAGTGGAGTGTGGACAGCTGTAAGAAGTATGCTGAGATGCTTACTGATGCTGACGGTTTGTTGTCAATGAAGACTCCGCATTATGCCAGGAATGCGATTTCTTTGATATTACATTTCATTGATTGTTTCCTAGAAGAATTGGCCAAGGTATCGAAAGGGAAGGTACCAGAAGACAGTATGGTGGAACTGCTTCGTCCGTTCTGTGAGTACACGGCGCAAGGTGAAGTCCCCGCGCTGACCGAGGCTTCTCAGAGACTCCTGATGGCGCTGCTGCGGCAGAGCAAGGAAGGCATCATGTACGCTGAAGCAACTAGAGCATGGAAACAGATGGGTTGCCCTAAAGGAGGTCCTGACGCCTTGGAATTGGTGGTTGAAGATGAGTCTATGAACAATGAAGACAGCGATGATGAAGATGAAGATACGGGCGCGCTGGACCCGCGCGCGGGCGGCGTGTCGGTGTGGCTGCGCACGCTGGCGGTGCCGGGCGCGGCGCTGGCGGGGCTGCTGCGCGCGCTGCTGGCCCGCACGCGCGTGGCGGCGCAGGGCCGCGTGCGCGTGTGCATGCGCAAGTTTGAAAAGTACGCGCGGGGCCAGTACCCGCTTAAGATGTCCGCCCGCGACACGGACGTCCCCAAGCTGTCTCCGCGCCTCCCCACCGCGCGCGCCGTCGCCAAGCTGCAGAAGGTCGAGAGGATGAGCGTCGCGGCCTCCGATGATCTGGCCCTCCGAGGTTTGAGTCGTAAACATCGGAAACGTCTCCTGGCGAAGTCGCGCGCCGGCATTAGTATCGTAGACGACGTGCAGAACCTCAAAGGAGACAATAACACTGACAAACACAATAATAAAAAGAGGAAAGCAGATTCAACACAAAAAGCTGCCAAAAAGATGAAATTGAACGCAACCAAACCCGGACCGAGCCCGAGCGACGAGCAGCGGGCAGCCGAGCGCGGCGGAGGGGAGGCGGCCGCGCCCTCCCGCCCCTCCCCCCCCGATAGAAAACAAAATAATGACATTGAGAAAACAAAGAAACTTAAACTCAAACAAAAAGCTAAAACTAAAATATTGACTTCAGTTCAGAACAATATAAACGCGACACCACACAAACAAACGGACAAACAAAAGCCCCTTAAACTCATTAAACTCGACAAGGTTAAAAATAACAATAATAAGAATAAAATAAAACAATTATTGACTGTTGACAATAAAACTGTCAAGACACAGACCCCGGTCAGCAAAAATCACAATGTAGAAGCGAAGCCCACAGTGCTAGTGAATAAAGTAAAGAAATTTAATAAAACGAATGATTCGATTCACAGCCCCAAGAAGGTTAAGTTCGTTTTGAAAAATAATTGTATGCAGAAGCCCGTGGACTACTATAAGAGTGTCCGACAGAGCCCCAGCATACCGTTCGACAGCTCCAAGACACCGGCCAGGACTAATCTCAAACCTTCCACACCGTCACCCATCAACCCATTCTTCAAGAAGAAACTCAGACTCAAATAA

Protein

MKLNEKDKKRKQKLKDKIVKTKKEQVAVVAQEIKFARLLSGNENKVRERVIKTLKKWLQNCFHRGYEFKEDDFTRVWKGIFYAMWMSDKPLVQEDLAENIAGILDHFPPEHLHHAMLMTKAGFKVLATEWFGIDQHRIDKFLMLARRYLRGSIRCLQRCEWSVDSCKKYAEMLTDADGLLSMKTPHYARNAISLILHFIDCFLEELAKVSKGKVPEDSMVELLRPFCEYTAQGEVPALTEASQRLLMALLRQSKEGIMYAEATRAWKQMGCPKGGPDALELVVEDESMNNEDSDDEDEDTGALDPRAGGVSVWLRTLAVPGAALAGLLRALLARTRVAAQGRVRVCMRKFEKYARGQYPLKMSARDTDVPKLSPRLPTARAVAKLQKVERMSVAASDDLALRGLSRKHRKRLLAKSRAGISIVDDVQNLKGDNNTDKHNNKKRKADSTQKAAKKMKLNATKPGPSPSDEQRAAERGGGEAAAPSRPSPPDRKQNNDIEKTKKLKLKQKAKTKILTSVQNNINATPHKQTDKQKPLKLIKLDKVKNNNNKNKIKQLLTVDNKTVKTQTPVSKNHNVEAKPTVLVNKVKKFNKTNDSIHSPKKVKFVLKNNCMQKPVDYYKSVRQSPSIPFDSSKTPARTNLKPSTPSPINPFFKKKLRLK

Uniprot

H9JNK0 A0A1B0ETL7

Pubmed

19121390

EMBL

BABH01035228 AJWK01011181

Proteomes

UP000005204 UP000092461

PRIDE

H9JNK0

Pfam

PF05997   Nop52        + More
PF09230   DFF40
PF02017   CIDE-N

Interpro

IPR003508   CIDE-N_dom        + More
IPR039729   DFF40
IPR010301   Nop52
IPR015311   DFF40_C

ProteinModelPortal

H9JNK0 A0A1B0ETL7

PDB

6EM5 E-value=2.16998e-15, Score=203

KEGG

101746190 K14849 ribosomal RNA-processing protein 1 | (RefSeq) ribosomal RNA processing protein 1 homolog

GO

GO:0030688 GO:0006364 GO:0005634 GO:0005737 GO:0006309 GO:0004536 GO:0008270 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR13067

Length:

659

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.27309

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02848

outside

1 - 659

Pi

16.075359

Theta

12.584215

Tajima's D

1.3783

CLR

0.823231

CSRT

0.769761511924404

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics