Gene

KWMTBOMO14238  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011106

Annotation

PREDICTED:_fasciclin-3_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr23(-):21175584-21260272      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.61 Nuclear   Reliability : 1.743

CDS

ATGATCGTCGGCACCACTTCGTACAGGCTGATACCTGGTAACCAGGAAGGCGACGTCGTGTACTCCGGACAAGGACTCACAACCGGAGAATGTGGCGCGCACATCAAGAACATCAGGGAAGACTGGAACGGCAATGTCACCTGCGTCCTGCCGCCACAGTCCAGCAACATCGAGGTCACCGGCACCATGAGGCTGCTTGTCGCCAGGGCCCCCGGAGACCCGCACCTGATCTCTCCCCCCCAGCCTCAGTTCAAAGACGAGGACATATTCTCGGCGCAGTGCGTTGTACCGAACGGCAGACCGGCCGCCAAGATCCTGTGGTTCTTAGATGACGAGCAACTGCTTGAAGGGGTCCATCAGCCAGTTGTCACCGACGAGCCAGGCTCCGACCTGCAGACCGTCAGCCAGAACATCACGAGGACCATCAGGGCTGACGACAACAACCGAATGCTGGCCTGCCGGGCGGAACACGAGGCCTTGGACCAGCCCAGAGAAGCGAAGAGACAACTTATTGTGCATTATCCACCCAAGCGCCTTGAATCCGGTCCTATCACCGTCTTCGGACTGAAGCTCGGAGCTGAAGGGAAGCTGAACGTGACCGTCCGCTCCAACCCCCCTCCCACTGCGGTGTGGATGGTGGGCGACATCAGGATAACCGCCCCACATTCCACTGACAACGGAGCCATCACGGCCTTGGAGCCTCTTCATTTGGGCAATGGACACTACAATGTGAGCCTCCATCTCGCTCGCATCACCAAAGAGGACGTTGAGAGAACGTATTACCTTCAAGTCTTCAACGACCTTGGGAGGGAGGAGTTCACACTCCGAATGAGCACTATGGACGAGCCTGCTGGCGTTGAATTAGACACCGGAGCCATAGTCGGCATAGTGGTGGCCGTACTCGTCCTCTTGATCGCGGTGTTCCTGGGTGTGTTCGCGTTCGCGACCGACAGATGGTGCTTCGCTGGACGATCCCATCGGATCGATATGCCGGACGGGGCGGACTCGGAAGCGCCGTTGCCATCCCACGATGACATCAAGGGCTCCGAGAATCCCACCCACGACCACGCCGAGTACATTACGAACGGGAACTCTAAGCTACCAGAAAAAAAACCGGACACGGCCGGGTCGAATGTCAAAATATTAAATGTTATCTCTAGCGGTTCCAACGAAGGGCACAGCCTTGAGAAGAGGAGGGAAGGTCGCGGTCGCGAGCTCGCCAAAAACTCCGGAGAATCTAGCGACACGGAGAGCGCGGCCGGCGCCGGGAGGTCGCGGCTGGCGGCGCTGGGGGCGCGGGTGAGGGCCGTCATACCGCGCGCCAAGGATCGCGTCCAGGCCACCGACGCTCATGACGCTGAGTCACAATCAGAAGAGAAGAAAGGCGTCATTTACGCTGAATTAGCTCTCGGAGATCAGACTTCAGCAGATAAGCCCCCTCCACCGTCAACGGAGTACGCTGAAATAGTCTACACGGACCAGCCCGGCCAGAAGGAAGTTAAAGAATAG

Protein

MIVGTTSYRLIPGNQEGDVVYSGQGLTTGECGAHIKNIREDWNGNVTCVLPPQSSNIEVTGTMRLLVARAPGDPHLISPPQPQFKDEDIFSAQCVVPNGRPAAKILWFLDDEQLLEGVHQPVVTDEPGSDLQTVSQNITRTIRADDNNRMLACRAEHEALDQPREAKRQLIVHYPPKRLESGPITVFGLKLGAEGKLNVTVRSNPPPTAVWMVGDIRITAPHSTDNGAITALEPLHLGNGHYNVSLHLARITKEDVERTYYLQVFNDLGREEFTLRMSTMDEPAGVELDTGAIVGIVVAVLVLLIAVFLGVFAFATDRWCFAGRSHRIDMPDGADSEAPLPSHDDIKGSENPTHDHAEYITNGNSKLPEKKPDTAGSNVKILNVISSGSNEGHSLEKRREGRGRELAKNSGESSDTESAAGAGRSRLAALGARVRAVIPRAKDRVQATDAHDAESQSEEKKGVIYAELALGDQTSADKPPPPSTEYAEIVYTDQPGQKEVKE

Uniprot

H9JNK2   A0A2W1BL41   A0A194PYX8   A0A2A4K6Z5   A0A2H1VEX3   S4PDS4   + More
A0A2A4K6Y4   N6TZG2   A0A1Y1KGS5   D2A3V0   A0A310SN08   A0A154PFW4   A0A0L7QQD7   U5EPA2   A0A0M8ZX82   A0A1B6GGZ2   A0A1L8E4C5   A0A1L8E3S7   A0A1B6BZV0   A0A026VWR8   A0A195B0A6   F4X1W6   A0A1A9XK74   E2BXJ6   A0A1B0A5T1   A0A1L8D9K8   A0A1L8E3G2   E2AMP6   A0A151X8F1   A0A1B0G781   A0A195D4K5   A0A0A9X7M3   A0A0K8S6Z3   A0A0C9RM68   A0A1J1IS43   A0A182J926   A0A182W9F8   A0A1L8E465   A0A195EEZ5   A0A182Y235   A0A0C9RIK1   A0A182RWK5   A0A182NP83   A0A084W655   A0A182K1W7   K7JQK7   A0A182VBW2  

Pubmed

19121390    28756777    26354079    23622113    23537049    28004739    + More
18362917    19820115    24508170    21719571    20798317    25401762    25244985    24438588    20075255   

EMBL

BABH01035219    KZ149990    PZC75608.1    KQ459593    KPI96360.1    NWSH01000112    + More
PCG79430.1    ODYU01002203    SOQ39393.1    GAIX01004832    JAA87728.1    PCG79432.1    APGK01055246    KB741261    KB632413    ENN71637.1    ERL95265.1    GEZM01084771    JAV60689.1    KQ971348    EFA04881.2    KQ762196    OAD56145.1    KQ434889    KZC10324.1    KQ414792    KOC60726.1    GANO01003765    JAB56106.1    KQ435827    KOX71916.1    GECZ01008057    JAS61712.1    GFDF01000702    JAV13382.1    GFDF01000701    JAV13383.1    GEDC01030520    JAS06778.1    KK107672    EZA48182.1    KQ976694    KYM77639.1    GL888555    EGI59553.1    GL451265    EFN79565.1    GFDF01010928    JAV03156.1    GFDF01000910    JAV13174.1    GL440840    EFN65314.1    KQ982409    KYQ56651.1    CCAG010010447    CCAG010010448    CCAG010010449    CCAG010010450    KQ976870    KYN07818.1    GBHO01026882    JAG16722.1    GBRD01016785    JAG49042.1    GBYB01008076    JAG77843.1    CVRI01000059    CRL03061.1    GFDF01000762    JAV13322.1    KQ979039    KYN23429.1    GBYB01008075    JAG77842.1    ATLV01020735    KE525306    KFB45699.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000019118    UP000030742    UP000007266    + More
UP000076502    UP000053825    UP000053105    UP000053097    UP000078540    UP000007755    UP000092443    UP000008237    UP000092445    UP000000311    UP000075809    UP000092444    UP000078542    UP000183832    UP000075880    UP000075920    UP000078492    UP000076408    UP000075900    UP000075884    UP000030765    UP000075881    UP000002358    UP000075903   

PRIDE

H9JNK2   

Pfam

PF08205   C2-set_2        + More
PF07679   I-set

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR013162   CD80_C2-set       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR013098   Ig_I-set       
IPR003599   Ig_sub       

SUPFAM

SSF48726   SSF48726       

Gene 3D

2.60.40.10    

ProteinModelPortal

H9JNK2   A0A2W1BL41   A0A194PYX8   A0A2A4K6Z5   A0A2H1VEX3   S4PDS4   + More
A0A2A4K6Y4   N6TZG2   A0A1Y1KGS5   D2A3V0   A0A310SN08   A0A154PFW4   A0A0L7QQD7   U5EPA2   A0A0M8ZX82   A0A1B6GGZ2   A0A1L8E4C5   A0A1L8E3S7   A0A1B6BZV0   A0A026VWR8   A0A195B0A6   F4X1W6   A0A1A9XK74   E2BXJ6   A0A1B0A5T1   A0A1L8D9K8   A0A1L8E3G2   E2AMP6   A0A151X8F1   A0A1B0G781   A0A195D4K5   A0A0A9X7M3   A0A0K8S6Z3   A0A0C9RM68   A0A1J1IS43   A0A182J926   A0A182W9F8   A0A1L8E465   A0A195EEZ5   A0A182Y235   A0A0C9RIK1   A0A182RWK5   A0A182NP83   A0A084W655   A0A182K1W7   K7JQK7   A0A182VBW2  

PDB

3J8F     E-value=8.24609e-07,     Score=128

KEGG

101746048    no KO assigned | (RefSeq) fasciclin-3

GO

GO:0016021   GO:0005515   GO:0003676   GO:0005634   GO:0008270   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

502

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.91626

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.09427

outside

1  -  291

TMhelix

292  -  314

inside

315  -  502

 

 

Pi

16.680781

Theta

2.094175

Tajima's D

-2.218258

CLR

3.86039

CSRT

0.00109994500274986

Interpretation

Possibly Positive selection