Gene

KWMTBOMO14237  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011108

Annotation

PREDICTED:_dehydrogenase/reductase_SDR_family_member_4_[Papilio_xuthus]

Location

Bomo_Chr23(-):21163312-21170842      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.055

CDS

ATGTCAACTTCAGCAAACCCTGTTCGTGCAATTCAGAGCACTCGGTTCAGTGGGAAGGTGGCTATTGTAACAGCATCGACTGAAGGAATTGGGTACGCAATAGCTAAGAGGCTGGGAAGTGAAGGTGCTTCCGTAGTCATCTGCAGCCGGAAAGAGAGCAACGTTGGGAAAGCTGTGCAGAGCCTCCGAAGCGAGGGCATTACAGTGGAAGGAGTCGTCTGTCACGTCGCCAATCATGAACATAGGAGACGATTATTTGAAGTGGCCACAAGTAAGTTTGGCGGAGTGGATATCCTGGTATCAAACGCCGCGGTCAATCCAGCGGTGGCTTCGATCTTAGATACCGACGAACAAGTCTGGGACAAAATATTTGACGTTAACGTGAAAAGCTCCTGGCTGTTGGCCAAGGAGGCGTATCCGGAGCTGGTCAAGAGAGGAGGGGGCAGTATCGTATTCATATCTTCGATTGCAGCGTATCAACCAACGGAGCCTCTAGGTGCCTATGGTGTTAGTAAAACGACGCTCCTTGGACTTACGAAGGCGATAGCCAACGAAACAGTACACGAGAACATCAGAGTGAACTGCGTCGCTCCCGGGATCGTCGTCACAAAGTTTGCATCCGCGATAACAAACTCCGAGGCTGGGGCGGAGAAGAGCCTATCGAATGTCCCATTGAAAAGATTCGGGAGACCAGAAGAAATTGCTGGTGCCGTAGCGTTTTTGGCTTCGGATGACGCCAGCTACATCACCGGAGAGACTGTTGTGGTTGCTGGAGGGGCGCCCGCACGACTTTGA

Protein

MSTSANPVRAIQSTRFSGKVAIVTASTEGIGYAIAKRLGSEGASVVICSRKESNVGKAVQSLRSEGITVEGVVCHVANHEHRRRLFEVATSKFGGVDILVSNAAVNPAVASILDTDEQVWDKIFDVNVKSSWLLAKEAYPELVKRGGGSIVFISSIAAYQPTEPLGAYGVSKTTLLGLTKAIANETVHENIRVNCVAPGIVVTKFASAITNSEAGAEKSLSNVPLKRFGRPEEIAGAVAFLASDDASYITGETVVVAGGAPARL

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

H9JNK4   A0A2A4JK89   A0A194PWI4   D2SNW0   A0A194QUE6   A0A2H1VNY5   + More
H9JQH9   A0A3S2L990   A0A212EM40   R4WDM8   A0A182X3R6   A0A182I3A3   A0A182XYV9   U5EWL2   A0A182VMY9   A0A182WJ87   A0A182KRB2   A0A182RSN1   Q7QJE4   A0A1Q3FJU4   A0A182MEK3   A0A084WN98   A0A1S4FCV9   A0A182NHV8   A0A182PQF5   A0A182IN68   Q176Z2   A0A0T6AUL9   A0A182GXS7   A0A182G5T3   A0A1B6C7C6   B0WXE6   D6WFA3   A0A182QY63   A0A182JV87   A0A1B6F9X4   A0A023EL45   W5JPB4   A0A1J1I894   A0A2M3ZBF2   A0A1S4ECP8   A0A2M4BW22   A0A1B6L3X8   A0A182FF41   A0A023FA77   A0A2M4BW41   A0A182UHE1   A0A0L0BKR1   D6WFA2   Q5FVX2   A0A026W8F7   A0A336LXI2   A0A2J7QXC6   A0A1L8ECQ8   A0A2M3ZJG7   A0A1L8EBM6   Q6DJN9   F7A1E4   A0A2G8K236   A0A0P4VRY8   A0A1L8HYS5   A0A1L8ECT5   A0A1I8NQW8   A0A0V0G5D1   A0A0N8DC99   W8C3I0   A0A0N8BJS9   A0A0P6I897   A0A067QR58   E9FVF3   A0A1L8EA07   A0A182SN43   A0A0P5T9G6   A0A087UTH3   A0A1I8N4U5   A0A0P5JEB6   A0A1A9WBP1   A0A0N8CAM7   A0A0P5UCX3   A0A2P6K321   A0A2C9JMD9   A0A1A9VN14   A0A0P5ULN5   A0A0K8SGQ3   A0A0M3QVW0   A0A1A9ZMI0   D3TNI9   A0A3S1BUX9   B4IX02   A0A2S2NMB6   A0A0A9Z575   A0A0N8EGT2   A0A0P6BMU8   A0A0A1XNH2   B4KWZ6   A0A2B4S7B5   A0A0K8WF41   B4HUD8   T1KNI7   B4LFQ3  

Pubmed

19121390    26354079    20074338    22118469    23691247    25244985    + More
20966253    12364791    14747013    17210077    24438588    17510324    26483478    18362917    19820115    24945155    20920257    23761445    25474469    26108605    24508170    30249741    20431018    29023486    27129103    27762356    24495485    24845553    21292972    25315136    15562597    20353571    17994087    25401762    25830018   

EMBL

BABH01035219    NWSH01001177    PCG72239.1    KQ459590    KPI97368.1    EZ407244    + More
ACX53801.1    KQ461190    KPJ07176.1    ODYU01003588    SOQ42549.1    BABH01012008    BABH01012009    RSAL01000414    RVE41830.1    AGBW02013918    OWR42562.1    AK417828    BAN21043.1    APCN01000204    GANO01001366    JAB58505.1    AAAB01008807    EAA04619.4    GFDL01007282    JAV27763.1    AXCM01005343    ATLV01024580    KE525352    KFB51692.1    CH477380    EAT42217.1    LJIG01022786    KRT78724.1    JXUM01020768    KQ560581    KXJ81809.1    JXUM01043910    KQ561380    KXJ78774.1    GEDC01027926    JAS09372.1    DS232163    EDS36476.1    KQ971319    EFA00284.1    AXCN02000379    GECZ01022730    JAS47039.1    GAPW01003678    JAC09920.1    ADMH02000549    ETN65951.1    CVRI01000039    CRK94633.1    GGFM01005125    MBW25876.1    GGFJ01008134    MBW57275.1    GEBQ01021535    JAT18442.1    GBBI01000326    JAC18386.1    GGFJ01008138    MBW57279.1    JRES01001708    KNC20675.1    EFA00285.2    BC089728    AAH89728.1    KK107403    QOIP01000011    EZA51309.1    RLU16716.1    UFQS01000164    UFQT01000164    SSX00677.1    SSX21057.1    NEVH01009382    PNF33231.1    GFDG01002271    JAV16528.1    GGFM01007891    MBW28642.1    GFDG01002642    JAV16157.1    BC075136    AAH75136.1    AAMC01116011    MRZV01000964    PIK42067.1    GDKW01002757    JAI53838.1    CM004466    OCU01254.1    GFDG01002272    JAV16527.1    GECL01002949    JAP03175.1    GDIP01047855    LRGB01000024    JAM55860.1    KZS21785.1    GAMC01002737    JAC03819.1    GDIQ01170827    JAK80898.1    GDIQ01033977    JAN60760.1    KK853119    KDR11131.1    GL732525    EFX88544.1    GFDG01003238    JAV15561.1    GDIP01130750    JAL72964.1    KK121532    KFM80662.1    GDIQ01200808    JAK50917.1    GDIQ01098443    JAL53283.1    GDIP01132105    JAL71609.1    MWRG01034236    PRD20721.1    GDIP01111209    JAL92505.1    GBRD01013862    GBRD01013861    JAG51965.1    CP012525    ALC43079.1    CCAG010020395    EZ422991    ADD19267.1    RQTK01000001    RUS92170.1    CH916366    EDV96308.1    GGMR01005696    MBY18315.1    GBHO01003177    GBHO01003174    JAG40427.1    JAG40430.1    GDIQ01028212    JAN66525.1    GDIQ01241351    GDIP01027309    JAK10374.1    JAM76406.1    GBXI01001443    JAD12849.1    CH933809    EDW18617.1    LSMT01000163    PFX24979.1    GDHF01002645    JAI49669.1    CH480817    EDW50559.1    CAEY01000277    CH940647    EDW69280.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000076407    UP000075840    UP000076408    UP000075903    UP000075920    UP000075882    UP000075900    UP000007062    UP000075883    UP000030765    UP000075884    UP000075885    UP000075880    UP000008820    UP000069940    UP000249989    UP000002320    UP000007266    UP000075886    UP000075881    UP000000673    UP000183832    UP000079169    UP000069272    UP000075902    UP000037069    UP000053097    UP000279307    UP000235965    UP000008143    UP000230750    UP000186698    UP000095300    UP000076858    UP000027135    UP000000305    UP000075901    UP000054359    UP000095301    UP000091820    UP000076420    UP000078200    UP000092553    UP000092445    UP000092444    UP000271974    UP000001070    UP000009192    UP000225706    UP000001292    UP000015104    UP000008792   

PRIDE

H9JNK4    H9JQH9   

Pfam

PF00106   adh_short

Interpro

IPR002347   SDR_fam        + More
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR029511   DHRS4-like       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

H9JNK4   A0A2A4JK89   A0A194PWI4   D2SNW0   A0A194QUE6   A0A2H1VNY5   + More
H9JQH9   A0A3S2L990   A0A212EM40   R4WDM8   A0A182X3R6   A0A182I3A3   A0A182XYV9   U5EWL2   A0A182VMY9   A0A182WJ87   A0A182KRB2   A0A182RSN1   Q7QJE4   A0A1Q3FJU4   A0A182MEK3   A0A084WN98   A0A1S4FCV9   A0A182NHV8   A0A182PQF5   A0A182IN68   Q176Z2   A0A0T6AUL9   A0A182GXS7   A0A182G5T3   A0A1B6C7C6   B0WXE6   D6WFA3   A0A182QY63   A0A182JV87   A0A1B6F9X4   A0A023EL45   W5JPB4   A0A1J1I894   A0A2M3ZBF2   A0A1S4ECP8   A0A2M4BW22   A0A1B6L3X8   A0A182FF41   A0A023FA77   A0A2M4BW41   A0A182UHE1   A0A0L0BKR1   D6WFA2   Q5FVX2   A0A026W8F7   A0A336LXI2   A0A2J7QXC6   A0A1L8ECQ8   A0A2M3ZJG7   A0A1L8EBM6   Q6DJN9   F7A1E4   A0A2G8K236   A0A0P4VRY8   A0A1L8HYS5   A0A1L8ECT5   A0A1I8NQW8   A0A0V0G5D1   A0A0N8DC99   W8C3I0   A0A0N8BJS9   A0A0P6I897   A0A067QR58   E9FVF3   A0A1L8EA07   A0A182SN43   A0A0P5T9G6   A0A087UTH3   A0A1I8N4U5   A0A0P5JEB6   A0A1A9WBP1   A0A0N8CAM7   A0A0P5UCX3   A0A2P6K321   A0A2C9JMD9   A0A1A9VN14   A0A0P5ULN5   A0A0K8SGQ3   A0A0M3QVW0   A0A1A9ZMI0   D3TNI9   A0A3S1BUX9   B4IX02   A0A2S2NMB6   A0A0A9Z575   A0A0N8EGT2   A0A0P6BMU8   A0A0A1XNH2   B4KWZ6   A0A2B4S7B5   A0A0K8WF41   B4HUD8   T1KNI7   B4LFQ3  

PDB

3O4R     E-value=7.14492e-63,     Score=608

KEGG

101745761    K11147 dehydrogenase/reductase SDR family member 4 [EC:1.1.-.-] | (RefSeq) dehydrogenase/reductase S

PATHWAY

00830    Retinol metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0016491   GO:0004090   GO:0016021  

PANTHER

PTHR43943:SF8  

Length:

264

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.28155

Exp number, first 60 AAs:

0.23156

Total prob of N-in:

0.08192

outside

1  -  264

 

 

Pi

0.195287

Theta

1.763461

Tajima's D

-2.052478

CLR

946.93047

CSRT

0.00394980250987451

Interpretation

Possibly Positive selection