Gene

KWMTBOMO14236

Pre Gene Modal

BGIBMGA011109

Annotation

PREDICTED:_23_kDa_integral_membrane_protein-like_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr23(-):21145297-21153681      View in EpiBrowser

Full name

Tetraspanin      

Location in the cell

PlasmaMembrane   Reliability : 4.984

CDS

ATGTGTTGCCCCGAGTTTATAGCTAAATATGTACTCTTCATCGCCAACCTTGTTTTTTCGTTGGCAGGTCTAGCTATTATACGTCTTGGAGTGGCCGTCTTAAGAAATCTACGGGATCTTCAAGATATTCTACCAGTCAACGCTTTGCCAATAGGGATAATCGTCCTCGGATGCATCATATTCATCATTGCATTCCTAGCGTGCTGTGGAGCGATAAAGGAATCAAGATGTATGCTGATAACCTACTCCATATTCATGGTGATACTGGTGGCCGTGAAGATCTACCTGGCTATCGTGGTATTCGGTTTTCTGTCCGACGTCACCAGCACAATAACCAGCTGGGTGACCACAGCGTTCAACACGAGCAGCTTAAGAGACGTATATCACGTCATGGAAGCTCTATTCAATTGCTGTGGAACAACCGGCCCCTCTTCGTACGACGGTATCTTGTCACAGCTGCCGCCCTCGTGCTGCGCCAGCCCCGTTGACAACACCTTCTATGCCCCCAACGCGTTCCCCGGCTGCACCACTCGACTGATTGATTACTTCGATACCTTCGGTAGGGCCATCGGCAGCGTTCTGATCATTATCATATTTCTTGAGTTCATCTCGATCATCTTCGCTTGGTTCCTGTCGCATTCTTATTCGCAGAAACGGCGCGGGAATATAGCATAA

Protein

MCCPEFIAKYVLFIANLVFSLAGLAIIRLGVAVLRNLRDLQDILPVNALPIGIIVLGCIIFIIAFLACCGAIKESRCMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEALFNCCGTTGPSSYDGILSQLPPSCCASPVDNTFYAPNAFPGCTTRLIDYFDTFGRAIGSVLIIIIFLEFISIIFAWFLSHSYSQKRRGNIA

Similarity

Belongs to the tetraspanin (TM4SF) family.

Uniprot

H9JNK5   A0A2A4K689   A0A2W1BPW8   A0A3S2NM92   A0A1E1W0A4   S4PF79   + More
A0A2A4K899   A0A3S2LT60   Q1HQ39   A0A212EGN7   A0A194RHI5   I4DJ82   A0A194QGK8   A0A1L8DKH3   A0A2A4JXL7   I4DPV3   A0A1L8DJJ6   Q9NB08   V5I9N6   I4DMY0   A0A0G4AJH1   A0A1E1WV10   A0A1E1W4P8   A0A1B0GKM0   S4PWL6   E0VMX8   A0A0C9Q5P6   A0A084WER4   A0A182I2Q6   A7URL1   Q7PTA7   A0A194Q3K1   A0A212EWY8   R4V3T2   A0A182N923   N6U6Y0   A0A182Q6M3   A0A067QYE5   A0A182YML0   A0A0A1X8C6   A0A1I8PEJ6   A0A2M4CTQ4   A0A2M4CHV5   A0A2M4CV63   W8BXN6   A0A2M4BYW8   A0A2M4A0S0   A0A2M4A0K4   A0A2M4CQ62   A0A224XJR8   T1GNT4   A0A2J7QP49   V5G3W6   W8CAJ3   B4M9T6   A0A1I8NGG4   A0A1S4G0M8   A0A1S4G0S2   A0A139WBP1   Q7K1I4   A0A1I8QAH3   A0A182IP56   A0A1L8EG93   B3MHM8   A0A1W4V1F2   A0A1J1IZR8   A0A034V4M1   A0A023EK90   A0A1W4WL05   A0A023EK84   B4P1B8   T1E2B6   Q16HX6   Q16HX5   B4MPV5   B4KF00   Q292W0   A0A182TSU7   B4P1C0   A0A194QWI4   A0A1J1IM26   A0A194Q3I5   A0A0T6AV57   A0A182KQN6   A0A034WBD7   A0A0C9R4C5   A0A1L8EFL5   A0A0M4E1J6   Q292W2   A0A1I8MN26  

Pubmed

19121390    28756777    23622113    22118469    26354079    22651552    + More
11122467    20566863    24438588    12364791    14747013    17210077    23537049    24845553    25244985    25830018    24495485    17994087    25315136    18362917    19820115    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    24945155    17550304    24330624    17510324    15632085    20966253   

EMBL

BABH01035216    BABH01035217    BABH01035218    NWSH01000112    PCG79438.1    KZ149990    + More
PZC75605.1    RSAL01000264    RVE43295.1    GDQN01010636    JAT80418.1    GAIX01004167    JAA88393.1    NWSH01000032    PCG80495.1    RVE43294.1    DQ443213    ABF51302.1    AGBW02015051    OWR40653.1    KQ460154    KPJ17288.1    AK401350    BAM17972.1    KQ458880    KPJ04637.1    GFDF01007244    JAV06840.1    NWSH01000388    PCG76761.1    AK403798    BAM19943.1    GFDF01007446    JAV06638.1    AF274023    AAF90149.1    GALX01002620    JAB65846.1    AK402648    BAM19270.1    KP999984    AKM70275.1    GDQN01000423    JAT90631.1    GDQN01010381    GDQN01009120    JAT80673.1    JAT81934.1    AJWK01030694    AJWK01030695    GAIX01006573    JAA85987.1    DS235327    EEB14734.1    GBYB01009418    JAG79185.1    ATLV01023246    KE525341    KFB48708.1    APCN01000178    AAAB01008807    EDO64653.1    EAA04202.4    KQ459472    KPJ00118.1    AGBW02011867    OWR45999.1    KC571964    AGM32463.1    APGK01047299    APGK01047300    KB741077    KB631602    ENN74342.1    ERL84575.1    AXCN02000540    KK853109    KDR11258.1    GBXI01007136    JAD07156.1    GGFL01004539    MBW68717.1    GGFL01000705    MBW64883.1    GGFL01004540    MBW68718.1    GAMC01002483    JAC04073.1    GGFJ01009053    MBW58194.1    GGFK01001038    MBW34359.1    GGFK01001025    MBW34346.1    GGFL01003304    MBW67482.1    GFTR01003691    JAW12735.1    CAQQ02119555    CAQQ02119556    CAQQ02119557    CAQQ02119558    CAQQ02119559    CAQQ02119560    NEVH01012097    PNF30360.1    GALX01003741    JAB64725.1    GAMC01005696    GAMC01005695    JAC00860.1    CH940654    EDW57962.1    KQ971372    KYB25323.1    AE013599    AF274014    AY069049    AAF57420.2    AAF90140.1    AAL39194.1    GFDG01001052    JAV17747.1    CH902619    EDV35864.1    CVRI01000065    CRL05701.1    GAKP01020761    JAC38191.1    GAPW01004058    JAC09540.1    GAPW01004057    JAC09541.1    CM000157    EDW89120.1    GALA01000879    JAA93973.1    CH478132    EAT33857.1    EAT33856.1    CH963849    EDW74144.1    CH933807    EDW11969.1    CM000071    EAL24751.1    EDW89122.1    KQ461175    KPJ07931.1    CVRI01000054    CRL00126.1    KPJ00103.1    LJIG01022738    KRT78969.1    GAKP01007859    JAC51093.1    GBYB01002740    JAG72507.1    GFDG01001394    JAV17405.1    CP012523    ALC39254.1    EAL24750.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000092461    UP000009046    UP000030765    UP000075840    UP000007062    UP000075884    UP000019118    UP000030742    UP000075886    UP000027135    UP000076408    UP000095300    UP000015102    UP000235965    UP000008792    UP000095301    UP000007266    UP000000803    UP000075880    UP000007801    UP000192221    UP000183832    UP000192223    UP000002282    UP000008820    UP000007798    UP000009192    UP000001819    UP000075902    UP000075882    UP000092553   

PRIDE

H9JNK5    Q1HQ39    Q7K1I4   

Pfam

PF00335   Tetraspanin

Interpro

IPR000301   Tetraspanin        + More
IPR018499   Tetraspanin/Peripherin       
IPR008952   Tetraspanin_EC2_sf       
IPR018503   Tetraspanin_CS       
IPR036259   MFS_trans_sf       

SUPFAM

SSF48652   SSF48652        + More
SSF103473   SSF103473       

Gene 3D

1.10.1450.10    

ProteinModelPortal

H9JNK5   A0A2A4K689   A0A2W1BPW8   A0A3S2NM92   A0A1E1W0A4   S4PF79   + More
A0A2A4K899   A0A3S2LT60   Q1HQ39   A0A212EGN7   A0A194RHI5   I4DJ82   A0A194QGK8   A0A1L8DKH3   A0A2A4JXL7   I4DPV3   A0A1L8DJJ6   Q9NB08   V5I9N6   I4DMY0   A0A0G4AJH1   A0A1E1WV10   A0A1E1W4P8   A0A1B0GKM0   S4PWL6   E0VMX8   A0A0C9Q5P6   A0A084WER4   A0A182I2Q6   A7URL1   Q7PTA7   A0A194Q3K1   A0A212EWY8   R4V3T2   A0A182N923   N6U6Y0   A0A182Q6M3   A0A067QYE5   A0A182YML0   A0A0A1X8C6   A0A1I8PEJ6   A0A2M4CTQ4   A0A2M4CHV5   A0A2M4CV63   W8BXN6   A0A2M4BYW8   A0A2M4A0S0   A0A2M4A0K4   A0A2M4CQ62   A0A224XJR8   T1GNT4   A0A2J7QP49   V5G3W6   W8CAJ3   B4M9T6   A0A1I8NGG4   A0A1S4G0M8   A0A1S4G0S2   A0A139WBP1   Q7K1I4   A0A1I8QAH3   A0A182IP56   A0A1L8EG93   B3MHM8   A0A1W4V1F2   A0A1J1IZR8   A0A034V4M1   A0A023EK90   A0A1W4WL05   A0A023EK84   B4P1B8   T1E2B6   Q16HX6   Q16HX5   B4MPV5   B4KF00   Q292W0   A0A182TSU7   B4P1C0   A0A194QWI4   A0A1J1IM26   A0A194Q3I5   A0A0T6AV57   A0A182KQN6   A0A034WBD7   A0A0C9R4C5   A0A1L8EFL5   A0A0M4E1J6   Q292W2   A0A1I8MN26  

KEGG

101745131    K06497 CD63 antigen | (RefSeq) 23 kDa integral membrane protein-like

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0005887   GO:0045169   GO:0003676   GO:0005634   GO:0008270   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Membrane  

Length:

224

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

90.95622

Exp number, first 60 AAs:

35.81924

Total prob of N-in:

0.98760

POSSIBLE N-term signal

sequence

inside

1  -  11

TMhelix

12  -  34

outside

35  -  43

TMhelix

44  -  66

inside

67  -  78

TMhelix

79  -  101

outside

102  -  188

TMhelix

189  -  211

inside

212  -  224

 

 

Pi

1.463428

Theta

4.855066

Tajima's D

-1.739907

CLR

298.821529

CSRT

0.0289985500724964

Interpretation

Possibly Positive selection