SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14235
Pre Gene Modal
BGIBMGA011155
Annotation
PREDICTED:_codanin-1_[Papilio_machaon]
Location in the cell
Extracellular   Reliability : 2.167
 

Sequence

CDS
ATGAAGCTCCTGACGGCGCCGAGCGAGGCGGCGGGGAGCCCCGGGCCGCGCCCCGCCGCCGCCGCCGCCATGACGGCCGCCGACTTCGACGCCGTCAACGTCAGCCCCTCCACCTGCATCATCACACTGAAGGAAGCGGTGTGCCAGCTGCTGGACGGGGGCTCCCCGGGGGGGCTGGGGGGGCTGCTGTCCGCGTGCGCGCTGGCGTGCTCGCCGCGCAACGTGTTCTGTCGCCCGCCGACACAGCGCGCCATACTGCAGCTGTCCGTGGACCTTTGCGTCATATACGTGAGCAGAAAGCCAAACGAACTAACGGACGAGTTCCTGAACGCTCTGCACGGCGTGTGGGACACGTGCTGCCCGGACCGCCCCCGGCCCCCGCCCCCCGACCTCGCCCCGCCCCCGCGCGCCCCCGACTCGCCGCCCGACGAGGACAGAGCGGGGGCGGCGGGGGGTGCGGGGCCCGGGGGGGCGGCGGACGAGTGCCGCGGGCTGCTGGAGCTGTTCGATCACATCCTATGTCCGCGGAACATCGTCATCCTGAGCGCGTCCCCCGGCGCCAAGCCCGACGTGTGGGGGCGCCTCGCCGCCGTGCTCGTGTACCTGCTGAGGAACTACTTCCTGAGCGAGGACTCCCTCACGGAGCAGTGCCTGGCCGTGTACCGGCAGGACTGGCCGCAGTCGACCCTCAAGAGCCTGTCGTCCTGCATGAAGTCGGTGTCGTCGAGCTGGTGCCAGTCCTCGACGGGGAAGTTCACGCTGTTCCTGGAGTTCCTGGCGGAGTACTGCGGGGACATGGACTACGAGCCCGCCGACTGA
Protein
MKLLTAPSEAAGSPGPRPAAAAAMTAADFDAVNVSPSTCIITLKEAVCQLLDGGSPGGLGGLLSACALACSPRNVFCRPPTQRAILQLSVDLCVIYVSRKPNELTDEFLNALHGVWDTCCPDRPRPPPPDLAPPPRAPDSPPDEDRAGAAGGAGPGGAADECRGLLELFDHILCPRNIVILSASPGAKPDVWGRLAAVLVYLLRNYFLSEDSLTEQCLAVYRQDWPQSTLKSLSSCMKSVSSSWCQSSTGKFTLFLEFLAEYCGDMDYEPAD

Summary

Pfam
PF15296   Codanin-1_C
Interpro
IPR040031   Codanin-1        + More
IPR011993   PH-like_dom_sf       
IPR028171   Codanin-1_C       
Gene 3D
ProteinModelPortal

Ontologies

GO

Topology

Length:
272
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06053
Exp number, first 60 AAs:
0.00784
Total prob of N-in:
0.01513
outside
1  -  272
 
 

Population Genetic Test Statistics

Pi
0.899482
Theta
3.603448
Tajima's D
-1.904961
CLR
2.623215
CSRT
0.0136493175341233
Interpretation
Possibly Positive selection
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