Gene

KWMTBOMO14233

Pre Gene Modal

BGIBMGA011154

Annotation

PREDICTED:_codanin-1_[Bombyx_mori]

Location

Bomo_Chr23(+):21117032-21124316      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.618

CDS

ATGCCTGAAACCATAATCGAAAGTGTCCTAAGAGGAAATTTAGACGTAGGCTTATTAGTTAAATGGCTCAACGACGAGTCAATCGAGGAAACTGAAGATTGTGTATTAAATTGCTGTGATAAAAATGAGTTTGTGTCCTATTTCTTGGCTTATTTGAGGAACCAAACGGACAGTATCACACAAACGAACAGCACTGCAGCACAATTACTACAGCACAGCACACCAGAACAGCTCTTCAGCTCGCAAAGGAAGCACCATCGTTCAATCAGCGATCCGACTAGTGAGGATCGATCAAAGGATAGCCTGTCAGTAAAGTCCGAGAAACACAGTAGCCATGAATCACCTAACAGAGACAGAAAAAGAGGAAAAAAAGTCAAGACGAAACTCTTCCCTGAAGATCGAAACCTATCAATATCTTCAGATGAATCTAAGCTTTGCATCGGTGTTGAGAGGCTCGTCTTGTCGAGTACACCCTTAAAGAATGGTCCGAATCATATGGAAAACTCAAATCTACTTAGTCCGGTAACACCTAGGTGCGATACGCCCAGAATCAACTACAAATCTAGGTCGCACGAGAAATGTCTAGGCGATTTCATGATAAACATCAAAAGTGCAAAGAAAAAAAAACCTAAAGAGCCTGAACCGAAAATAGAATTAGATCTGAGTAGTTCTGAGTTCCCAGAAATAGGTGCCAGAAAAGCCAGCTCATTAAGATCTGAGAAACGTAGGATTAAGCCAACGAATATAGATAAGAATTCCCAGAAAAGTTGCTCATTCAACAGCTTCACCGAATTCCAAAGACCATCACCAATGGCTCTAGAGGACAACGCTTTGTTCCAACCTCAAAAGTTGCAGCCAAAAGAGGCTTCGAGCACCTTTGATGCTGAAAGAAACATACTGAAGCAAGAGAGACATAAGCTAATGGAGAAATTCAATATTTTAAACACAAATTCAACTTCTACACAAAGAATTACGCCACAAATCAAAGTAACGCAAAAAGAATTTGAAAAGAGCAAAACAATTACTATGACCGATGTCTCTAATGTTTTATTCAAAGAGAAAATTGACGAAATAGTTCTTATTTATGAGCAGTACGACGAAGAGTGTACCTATGCCGAAAGCAAATTGAGAGACAATGATTTTGAATATTTACTCCAAAGTGTTCATAATGCAACATATTTTGCTGTAAAATCATTGTGGCTTAATCGTTTTGTGCTAGAAGTTATTTTGGATAAAAATTCATTAAAAACATTGGGGGAAAACAAGAATGTGAGAAATTTTTATCCAGATCTAGCTAAGTTTCTACTGAATTGCTACGGACTGAGGTGCGAAGCGGAGGCCAATCAGGAGCGACCGCGGACGCAGGACGCGCGTCCGTCGAATGGCGTCATATGTTTCAATTCAGAGACGGACAACGCCGACAACTTCCCGAGCGCGCTGAGCTTTCAGAATTTCAAAAAGCAGAGGGACATGTTCTACGAGGCCTTGAGGTGGTACGGACAGGAGGGGGCGGTGCGGGCGCGCGCCCGGGGCTGCGTGGCGGGCGGGGGCGGCGCGCCGGACAACTGCAAGCACCTGGCCGCGCTGCTGCTGCGGCACATGCTGGCCTCCTGTCTGCCCGGCGGCGACGGACTCTCACAGGAGTCGAAGCTGAGCAAGCTGCAGAGGCGGCTGACGTGCCCCAACGCGCCGGACCCGCACCGCCTGCCGCACTTCACGCCCGCAGAGATGTTCTACAAAGAGTTCATAGCGCACGCGGACGGCGACTCGTTCCGCGCGCACCTGCGGGACGCGCTCGCCACCGAGCTGCGGGCGCTCGACGCCGCGCACTTCAGCCTCGACGACAACCCGAACAACGAGATATCGAAGGAGTTTTTGAAGATCTCAAAGAAGCTGTTCCTGCTGGCCAAGTTCCTGGGCTACGTGACGTCACTTCCGTACACCCAGTCGCCGGAAGCGACCAAATCCAATATGATCGTTAAGGAGACGAAGGACTATCGGTACTCGGTGCCCAAAGAGAAGGTCCTGGAGAACGATCTGTATTTGAGAAATTATGTGAGTAAAATTCTCTAG

Protein

MPETIIESVLRGNLDVGLLVKWLNDESIEETEDCVLNCCDKNEFVSYFLAYLRNQTDSITQTNSTAAQLLQHSTPEQLFSSQRKHHRSISDPTSEDRSKDSLSVKSEKHSSHESPNRDRKRGKKVKTKLFPEDRNLSISSDESKLCIGVERLVLSSTPLKNGPNHMENSNLLSPVTPRCDTPRINYKSRSHEKCLGDFMINIKSAKKKKPKEPEPKIELDLSSSEFPEIGARKASSLRSEKRRIKPTNIDKNSQKSCSFNSFTEFQRPSPMALEDNALFQPQKLQPKEASSTFDAERNILKQERHKLMEKFNILNTNSTSTQRITPQIKVTQKEFEKSKTITMTDVSNVLFKEKIDEIVLIYEQYDEECTYAESKLRDNDFEYLLQSVHNATYFAVKSLWLNRFVLEVILDKNSLKTLGENKNVRNFYPDLAKFLLNCYGLRCEAEANQERPRTQDARPSNGVICFNSETDNADNFPSALSFQNFKKQRDMFYEALRWYGQEGAVRARARGCVAGGGGAPDNCKHLAALLLRHMLASCLPGGDGLSQESKLSKLQRRLTCPNAPDPHRLPHFTPAEMFYKEFIAHADGDSFRAHLRDALATELRALDAAHFSLDDNPNNEISKEFLKISKKLFLLAKFLGYVTSLPYTQSPEATKSNMIVKETKDYRYSVPKEKVLENDLYLRNYVSKIL

Uniprot

A0A2W1BKJ3   A0A2A4K5Y8   A0A2H1W557   A0A437AYJ0   A0A194PUD9   A0A194RIG9   + More
A0A212F4S6   A0A1S3IUX8   D2A4T9   A0A2Y9ELT5   A0A2Y9S6E6   U3ASN4   U3CHL5   K7FLM9   I3M7S0   A0A2K5QZC0   A0A0C9R346   A0A093NHW8   G1NGC3   A0A2Y9DUJ2   G1PWV9   A0A2K5BW51   G1KYC3   A0A091KNJ0   A0A091SJY3   A0A093FGL9   A0A3Q2HFG7   A0A087QYS4   U3IU11   F1N1F1   A0A094KE64   L8I514   A0A2K6FXT2   A0A151MV52   A0A091RVR9   A0A091PQV7   A0A151MV50   A0A091LMV1   A0A151MVA5   H0ZLM6   A0A2K5JK29   F7DMB3   R0LHH1   A0A091HHR8   A0A093PEY8   A0A093QY42   M7BQT7   A0A091F507   A0A3L8SVU2   A0A094MNN1   A0A093J038   A0A091R3J3   A0A452ISG1   A0A091U4N8   M4AIZ3   S7MI13   A0A091JBF8   A0A3B3YRQ5   H0VN64   A0A3Q3B024   A0A226N740   A0A3B3YRB3   A0A3Q0HKR7   A0A226NL87   A0A210QBN6   A0A3Q0HHI7   A0A0Q3QCI5   A0A091X0U9   A0A2P4TGU8   A0A1U7Q9B5   A0A1U8BNT6   A0A0A0AMJ7   A0A182U6T9   A0A091FMG9   A0A093GHB1   A0A3B5AHV5   H2TK67   A0A0T6BG10  

Pubmed

28756777    26354079    22118469    26383154    18362917    19820115    + More
25243066    17381049    20838655    21993624    19892987    23749191    19393038    22751099    22293439    20360741    23624526    30282656    28562605    23542700    24621616    28812685    21551351   

EMBL

KZ149990    PZC75602.1    NWSH01000112    PCG79436.1    ODYU01006399    SOQ48209.1    + More
RSAL01000274    RVE43143.1    KQ459593    KPI96369.1    KQ460152    KPJ17357.1    AGBW02010319    OWR48737.1    KQ971344    EFA05178.2    GAMT01008688    JAB03173.1    GAMS01004694    GAMS01004693    GAMR01005890    JAB18442.1    JAB28042.1    AGCU01168201    AGCU01168202    AGCU01168203    AGCU01168204    AGCU01168205    AGTP01002331    GBYB01010684    JAG80451.1    KL224794    KFW63746.1    AAPE02025768    AAPE02025769    AAPE02025770    AAPE02025771    AAPE02025772    KK535879    KFP29374.1    KK475668    KFQ58917.1    KK631031    KFV55705.1    KL226001    KFM06378.1    ADON01085771    KL254959    KFZ56910.1    JH882202    ELR50387.1    AKHW03004924    KYO28431.1    KK933797    KFQ46259.1    KK677731    KFQ10292.1    KYO28433.1    KK503451    KFP60496.1    KYO28432.1    ABQF01002485    ABQF01002486    ABQF01002487    ABQF01002488    ABQF01002489    ABQF01002490    ABQF01002491    ABQF01002492    KB743275    EOA99762.1    KL535466    KFO94270.1    KL668967    KFW74991.1    KL439435    KFW93803.1    KB516251    EMP39584.1    KK719449    KFO63609.1    QUSF01000004    RLW09908.1    KL346312    KFZ56024.1    KK566042    KFW04374.1    KK809314    KFQ34343.1    KK417687    KFQ85709.1    KE161462    EPQ04014.1    KK501717    KFP17203.1    AAKN02015922    AAKN02015923    MCFN01000169    OXB63361.1    AWGT02005233    OXB68244.1    NEDP02004260    OWF46147.1    LMAW01000714    KQK85868.1    KL411414    KFR07216.1    PPHD01000374    POI35554.1    KL872454    KGL95719.1    KL447129    KFO70151.1    KL215719    KFV66189.1    LJIG01000696    KRT86244.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    UP000085678    + More
UP000007266    UP000248484    UP000008225    UP000007267    UP000005215    UP000233040    UP000054081    UP000001645    UP000248480    UP000001074    UP000233020    UP000001646    UP000002281    UP000053286    UP000016666    UP000009136    UP000233160    UP000050525    UP000007754    UP000233080    UP000053258    UP000031443    UP000052976    UP000276834    UP000291020    UP000002852    UP000053119    UP000261480    UP000005447    UP000264800    UP000198323    UP000189705    UP000198419    UP000242188    UP000051836    UP000053283    UP000189706    UP000053858    UP000075902    UP000053760    UP000053875    UP000261400    UP000005226   

Pfam

PF15296   Codanin-1_C

Interpro

IPR028171   Codanin-1_C        + More
IPR040031   Codanin-1       
IPR011993   PH-like_dom_sf       

Gene 3D

2.30.29.30    

ProteinModelPortal

A0A2W1BKJ3   A0A2A4K5Y8   A0A2H1W557   A0A437AYJ0   A0A194PUD9   A0A194RIG9   + More
A0A212F4S6   A0A1S3IUX8   D2A4T9   A0A2Y9ELT5   A0A2Y9S6E6   U3ASN4   U3CHL5   K7FLM9   I3M7S0   A0A2K5QZC0   A0A0C9R346   A0A093NHW8   G1NGC3   A0A2Y9DUJ2   G1PWV9   A0A2K5BW51   G1KYC3   A0A091KNJ0   A0A091SJY3   A0A093FGL9   A0A3Q2HFG7   A0A087QYS4   U3IU11   F1N1F1   A0A094KE64   L8I514   A0A2K6FXT2   A0A151MV52   A0A091RVR9   A0A091PQV7   A0A151MV50   A0A091LMV1   A0A151MVA5   H0ZLM6   A0A2K5JK29   F7DMB3   R0LHH1   A0A091HHR8   A0A093PEY8   A0A093QY42   M7BQT7   A0A091F507   A0A3L8SVU2   A0A094MNN1   A0A093J038   A0A091R3J3   A0A452ISG1   A0A091U4N8   M4AIZ3   S7MI13   A0A091JBF8   A0A3B3YRQ5   H0VN64   A0A3Q3B024   A0A226N740   A0A3B3YRB3   A0A3Q0HKR7   A0A226NL87   A0A210QBN6   A0A3Q0HHI7   A0A0Q3QCI5   A0A091X0U9   A0A2P4TGU8   A0A1U7Q9B5   A0A1U8BNT6   A0A0A0AMJ7   A0A182U6T9   A0A091FMG9   A0A093GHB1   A0A3B5AHV5   H2TK67   A0A0T6BG10  

KEGG

101736321    K19531 codanin-1 | (RefSeq) codanin-1

GO

GO:0005886   GO:0008156   GO:0008104   GO:0005634   GO:0031497   GO:0012505   GO:0005829   GO:0016021  

PANTHER

PTHR28678  

Length:

690

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01171

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00007

outside

1  -  690

 

 

Pi

0.90721

Theta

5.463264

Tajima's D

-2.194782

CLR

133.451967

CSRT

0.00534973251337433

Interpretation

Uncertain