Gene

KWMTBOMO14231

Pre Gene Modal

BGIBMGA011153

Annotation

PREDICTED:_scavenger_receptor_class_B_member_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr23(+):21075702-21105292      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.932

CDS

ATGTCTAGTGGCTTGGCGCTGATCCTGGCATTGGTGAAGTCCATAGGCGACGGTAATCATCAGGCGAACCGGTTCGTGCTCGCATCAGCAGTCATCCTACTCCTCCTAGGCATAGTCATTGCCATATTCCTCGGGACTTGGATTCGACTCTTCATAGACCATGAGCTGGTGCTTCGCCCAGGTTCGATGACGTTCGAGTGGTGGGCGCGGCCTCCGGTGCGGCCCTTCGTCAAGGTCTACGTGTACAACGTGACCAACGCCGATGAGTTCCTCAACAACGGCTCCAAGCCGATACTGGACGAGCTCGGACCATATGTTTACTCTGAGGAGTGGGAGAAGATCAACATAACAGACAACGAGAATGGCACGCTGTCCTTCCACTACAAGAGGACGTACACCTTCCAGCCGGAGATGAGCAACGGGATGGACGACGATGCGGTCGTCGTGCCCAACATACCGATGCTGAGCGCGACATCTCAATCGAAGCACGCCGCTAGGTTCCTGCGTCTCGCCATGGCTTCCATCATGGACATATTGAAGATCAAGCCTTTTGTCGAGGTGTCCGTCGGTCAGCTGCTCTGGGGCTATGAAGATCCGCTCCTGAAGTTGGCCAAGGACGTCGTGCCCAAGGAGCAGAAGTTGCCTTACGAGGAATTCGGACTTTTTTATGGCAAGAACGGCACCTCTCCGGACGTGGTGACGATGTTCACTGGTGCTACGGACATGACCCGCTACGGCATCGTGGACCGCTACAACATGAGGGACCGGCTGCCCCACTGGACCACGGACCAGTGCAACAGCGTCGCCGGCTCCGACGGGTCCATCTTCCCGCCGCACATCACCGCGAACGACACGCTCCGGGTCTACGACAAGGACCTCTGCCGATTGCTTCCGCTGAGGTATCTCGAAACGGTGGAATCTTCAGCCGGAGTCGAAGGCTATAGGTTCACTCCCCCTGAGGATGTCTTCGCTAACGACGAGCACAATAAGTGCTTCTGTCCTGCCGGTCCCCCCTGCGCCCCCGACGGACTCTTCAACGTCTCCCTCTGCCAATACGATTCTCCCATAATGCTATCGTTCCCTCACTTCTACTTGGCGGACCCGAGCCTGCGGGAGGCAGTCGAGGGCATCTCACCACCAGTACCAGAGAAGCACAGACTGTACATCGACGTGCAGCCCGAGATGGGTATAGCAATGCGCGCTCGAGCTAGGATCCAGATTAACCTGGCCGTCTCCCAGGTCTTGGACATCAAGCAGGTGGCCAACTTCCCAGATATCGTCTTCCCCATATTGTGGTTCGAAGAGGGTATAGACGAGCTGCCGGAGCGGGTGTCGTCGCTGCTGCGGCTGGCGACGCGCGTGCCGGGCGTGGCGCGGGCGGCGCTGGCGGGCGGGCTGTGCGCGCTGGGCGCCGCGCTCGTGCTGCTCGCCGTCACCTGCCTCATCAGATCGTCTCACAGACAAAGCACTCTCAGGCTGGAGGCTCACGTTGTCGCGAAGCCGCCTCCACCCAAAACACCGAGCAAAGAAAGCGCCTACGAACTGAACAGCCGGAGATAA

Protein

MSSGLALILALVKSIGDGNHQANRFVLASAVILLLLGIVIAIFLGTWIRLFIDHELVLRPGSMTFEWWARPPVRPFVKVYVYNVTNADEFLNNGSKPILDELGPYVYSEEWEKINITDNENGTLSFHYKRTYTFQPEMSNGMDDDAVVVPNIPMLSATSQSKHAARFLRLAMASIMDILKIKPFVEVSVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGLFYGKNGTSPDVVTMFTGATDMTRYGIVDRYNMRDRLPHWTTDQCNSVAGSDGSIFPPHITANDTLRVYDKDLCRLLPLRYLETVESSAGVEGYRFTPPEDVFANDEHNKCFCPAGPPCAPDGLFNVSLCQYDSPIMLSFPHFYLADPSLREAVEGISPPVPEKHRLYIDVQPEMGIAMRARARIQINLAVSQVLDIKQVANFPDIVFPILWFEEGIDELPERVSSLLRLATRVPGVARAALAGGLCALGAALVLLAVTCLIRSSHRQSTLRLEAHVVAKPPPPKTPSKESAYELNSRR

Similarity

Belongs to the CD36 family.

Uniprot

H9JNP9   A0A194PSG6   A0A2A4JXP2   A0A2A4JWL0   A0A2W1BS53   A0A212ELF4   + More
S4PIN9   A0A0A9Z111   A0A146L3X1   A0A0A9YZJ9   A0A1L8DJY2   A0A1L8DJU8   A0A1L8DJU1   A0A1Q3FZ01   A0A2M4CTR7   A0A1B6CLY9   A0A182QT15   A0A2M4BKE1   A0A182YBW3   A0A182WMJ8   A0A182FCS4   A0A023ETI9   A0A2M4AF82   E0W153   A0A182J8X5   A0A182P0K9   A0A182NV30   A0A182K3R0   A0A182LHW8   A0A2C9H6J5   A0A182RQG1   A0A084VUD8   A7UTD1   Q17PS2   A0A182WS42   A0A182U010   A0A182VL64   Q7PHM8   A0A182HXT8   D2K2F5   A0A0L0CBL7   A0A1B0A1R7   A0A224XN62   A0A1B0BQW7   A0A1A9YD57   U5ET11   A0A067R9W5   A0A336MNJ0   A0A1I8PMR0   A0A0A1WD10   T1PCA8   A0A034V7C7   A0A0K8V6P0   T1IBV5   A0A0J9RKW7   B4QD55   A0A0J9RL49   A0A0B4LGP3   Q9W0X0   Q7KVF1   W8AZM4   Q8IGY0   A0A0R3NRJ3   A0A0Q5VNZ8   B4GDA2   B4PBY8   Q292L3   B3NR92   A0A0Q5VYK1   A0A1W4V0J0   A0A0Q9WFT2   A0A3B0J111   B4MNU8   Q8SZV3   A0A3B0JMG0   B4LL12   A0A0L7LTQ3   D2A3S6   A0A0P8XQ07   B3MCD0   B4J9L8   A0A0M4EWV8   A0A1B6L2A4   A0A1B6ES61   A0A0Q9XHK8   B4KQT1   A0A1A9WI71   E9IFP2   A0A1Y1M5E8   A0A195FWH9   A0A194RIS4   A0A3Q9ELP8   A0A026WY03   A0A3L8DGW4   A0A0C9R2F4   Q24336   A0A2H1V4H1   A0A1B0GC45   A0A0J7L9G5   A0A195DD19  

Pubmed

19121390    26354079    28756777    22118469    23622113    25401762    + More
26823975    25244985    24945155    20566863    20966253    24438588    12364791    14747013    17210077    17510324    20230829    26108605    24845553    25830018    25315136    25348373    22936249    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    15632085    17550304    23185243    18057021    26227816    18362917    19820115    21282665    28004739    30542294    24508170    30249741    7693949   

EMBL

BABH01035208    KQ459593    KPI96381.1    NWSH01000441    PCG76404.1    PCG76405.1    + More
KZ149990    PZC75600.1    AGBW02014062    OWR42330.1    GAIX01005330    JAA87230.1    GBHO01006566    GBHO01006565    GBRD01009533    JAG37038.1    JAG37039.1    JAG56291.1    GDHC01015425    JAQ03204.1    GBHO01006563    JAG37041.1    GFDF01007353    JAV06731.1    GFDF01007352    JAV06732.1    GFDF01007335    JAV06749.1    GFDL01002282    JAV32763.1    GGFL01004393    MBW68571.1    GEDC01022903    JAS14395.1    AXCN02001921    GGFJ01004302    MBW53443.1    GAPW01000970    GEHC01000812    JAC12628.1    JAV46833.1    GGFK01006128    MBW39449.1    DS235866    EEB19359.1    ATLV01016723    ATLV01016724    KE525103    KFB41582.1    AAAB01008905    EDO64039.1    CH477189    EAT48769.1    EAA09703.2    EAA44477.4    APCN01005348    GU175173    ACZ58351.1    JRES01000644    KNC29651.1    GFTR01006997    JAW09429.1    JXJN01018835    GANO01002985    JAB56886.1    KK852602    KDR20477.1    UFQT01001469    SSX30709.1    GBXI01017525    JAC96766.1    KA645573    KA649301    AFP60202.1    GAKP01020920    JAC38032.1    GDHF01032913    GDHF01018089    JAI19401.1    JAI34225.1    ACPB03004980    CM002911    KMY96501.1    CM000362    EDX08651.1    KMY96500.1    KMY96502.1    KMY96503.1    AE013599    AHN56668.1    AAM70803.2    AAF47309.1    AAM70804.1    AHN56667.1    GAMC01012270    JAB94285.1    BT001535    AAN71290.1    CM000071    KRT01621.1    CH954179    KQS63165.1    CH479181    EDW31578.1    CM000158    EDW92642.2    EAL24849.1    KRT01622.1    EDV57111.1    KQS63163.1    KQS63164.1    CH940648    KRF80260.1    OUUW01000001    SPP74475.1    CH963848    EDW73787.2    AY070494    AAL47965.1    SPP74476.1    EDW61819.1    KRF80261.1    JTDY01000119    KOB78739.1    KQ971348    EFA05670.1    CH902619    KPU76658.1    EDV37254.1    KPU76657.1    CH916367    EDW02525.1    CP012524    ALC42370.1    GEBQ01022202    GEBQ01012636    GEBQ01007898    JAT17775.1    JAT27341.1    JAT32079.1    GECZ01028983    JAS40786.1    CH933808    KRG04562.1    EDW09280.1    KRG04561.1    GL762880    EFZ20621.1    GEZM01041504    JAV80298.1    KQ981208    KYN44672.1    KQ460152    KPJ17344.1    MK049033    AZQ24974.1    KK107064    EZA60922.1    QOIP01000008    RLU19685.1    GBYB01001046    JAG70813.1    X73332    CAA51759.1    ODYU01000628    SOQ35733.1    CCAG010018987    LBMM01000192    KMR04532.1    KQ980989    KYN10727.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000075886    UP000076408    + More
UP000075920    UP000069272    UP000009046    UP000075880    UP000075885    UP000075884    UP000075881    UP000075882    UP000076407    UP000075900    UP000030765    UP000007062    UP000008820    UP000075902    UP000075903    UP000075840    UP000037069    UP000092445    UP000092460    UP000092443    UP000027135    UP000095300    UP000095301    UP000015103    UP000000304    UP000000803    UP000001819    UP000008711    UP000008744    UP000002282    UP000192221    UP000008792    UP000268350    UP000007798    UP000037510    UP000007266    UP000007801    UP000001070    UP000092553    UP000009192    UP000091820    UP000078541    UP000053240    UP000053097    UP000279307    UP000092444    UP000036403    UP000078492   

PRIDE

H9JNP9    Q9W0X0    Q7KVF1    Q8IGY0    Q8SZV3    Q24336    + More

Pfam

PF01130   CD36

Interpro

IPR002159   CD36_fam        + More
IPR005429   LimpII       
IPR005428   CD36/SCARB1/SNMP1       

ProteinModelPortal

H9JNP9   A0A194PSG6   A0A2A4JXP2   A0A2A4JWL0   A0A2W1BS53   A0A212ELF4   + More
S4PIN9   A0A0A9Z111   A0A146L3X1   A0A0A9YZJ9   A0A1L8DJY2   A0A1L8DJU8   A0A1L8DJU1   A0A1Q3FZ01   A0A2M4CTR7   A0A1B6CLY9   A0A182QT15   A0A2M4BKE1   A0A182YBW3   A0A182WMJ8   A0A182FCS4   A0A023ETI9   A0A2M4AF82   E0W153   A0A182J8X5   A0A182P0K9   A0A182NV30   A0A182K3R0   A0A182LHW8   A0A2C9H6J5   A0A182RQG1   A0A084VUD8   A7UTD1   Q17PS2   A0A182WS42   A0A182U010   A0A182VL64   Q7PHM8   A0A182HXT8   D2K2F5   A0A0L0CBL7   A0A1B0A1R7   A0A224XN62   A0A1B0BQW7   A0A1A9YD57   U5ET11   A0A067R9W5   A0A336MNJ0   A0A1I8PMR0   A0A0A1WD10   T1PCA8   A0A034V7C7   A0A0K8V6P0   T1IBV5   A0A0J9RKW7   B4QD55   A0A0J9RL49   A0A0B4LGP3   Q9W0X0   Q7KVF1   W8AZM4   Q8IGY0   A0A0R3NRJ3   A0A0Q5VNZ8   B4GDA2   B4PBY8   Q292L3   B3NR92   A0A0Q5VYK1   A0A1W4V0J0   A0A0Q9WFT2   A0A3B0J111   B4MNU8   Q8SZV3   A0A3B0JMG0   B4LL12   A0A0L7LTQ3   D2A3S6   A0A0P8XQ07   B3MCD0   B4J9L8   A0A0M4EWV8   A0A1B6L2A4   A0A1B6ES61   A0A0Q9XHK8   B4KQT1   A0A1A9WI71   E9IFP2   A0A1Y1M5E8   A0A195FWH9   A0A194RIS4   A0A3Q9ELP8   A0A026WY03   A0A3L8DGW4   A0A0C9R2F4   Q24336   A0A2H1V4H1   A0A1B0GC45   A0A0J7L9G5   A0A195DD19  

PDB

4Q4B     E-value=5.61489e-65,     Score=630

KEGG

101744837    no KO assigned | (RefSeq) scavenger receptor class B member 1

GO

GO:0016021   GO:0005044   GO:0005764   GO:0005887   GO:0016020   GO:0046872   GO:0015074   GO:0006355   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11923  

Length:

519

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

45.61376

Exp number, first 60 AAs:

22.86402

Total prob of N-in:

0.98857

POSSIBLE N-term signal

sequence

inside

1  -  24

TMhelix

25  -  47

outside

48  -  459

TMhelix

460  -  482

inside

483  -  519

 

 

Pi

5.290138

Theta

4.539031

Tajima's D

0.309772

CLR

1.065109

CSRT

0.489475526223689

Interpretation

Uncertain