SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14230
Annotation
endonuclease-reverse_transcriptase_[Bombyx_mori]
Full name
Integrin beta      
Location in the cell
Mitochondrial   Reliability : 1.796 Nuclear   Reliability : 2.073
 

Sequence

CDS
ATGATTGTACACCGCAGAACCAGGCCCCTAGTCCCCGGCGGCCCCGCTATTCCTGGTTACGGTAGCGGCCATGGTAACGGCGGGGCAAGGGGTGCTAAGAATCCCCGGCAGAGATCCGGCTACCACCCCCCTTCACAACGACAACTGGCCCTGGTGACATACAACGTGCGCACTTTGAGGTTGGACGAGAAGCTAATAGAGCTGGAAGAAGAAATGAACAAGTTGCGCTGGGACGTTATTGGTTTATCGGAGATCCGAAGAGAGGGGGAGGATACGAAAACCTTACAGTCCGGCCACTTGTTCTACTACCGGGAGGGAGAACAGAAGTCCCAAGGTGGTGTTGGGTTTATCGTCCACAAATCTCTCATAAACAACATTGTGGCCATCGAAAGTGTGTCGAGTAGGGTAGTATACCTTGTCCTCAAAATCTCAAAGCGGTATTCGCTGAAGATTGTACAGGTATACGCCCCATCGACGTCACATCCAGACGATGAAGTGGAGGCTACGTATGAGGACATTAGTAGGGCCATACGTAACTCCCAATCACATTTTACCGTTGTTATGGGAGATTTCAATGCAAAACTGGGCCGTAGAGGCGATGATGAGTTGAAAGTGGGGCCATTTGGATTTGGGCAGCGGAATCCCAGAGGACAGATGCTGGCGAACTTTATGGAGAAGGAAGGACTCTTTATGATGAATTCTTTCTTCAAGAAGCCGCCACAGCGGAAATGGACCTGGTTGAGTCCCGACGGTGTAACAAGAAATGAAATTGACTTCATCATGAGCACCAACAAACAGATATTCAACGATGTCTCTGTGATCAACAGTGTTAAAACAGGAAGTGATCACCGAATCGTCAGAGGCATGTTGAATATCAATGTCAGACTGGAAAGATCGCGTCTGATGAAGTCAACGCTTCGACCGTCGAATGCACAAATCCAAAACCCCGAGAGCTTTCAACTCGAATTGGCTAATCGCTTCGAATGGCTAAACAGCTGCGCATCAGTGGACGATGTAAACAGCAGGCTGGTAGAGACTGTCCGTACGGTAGGGTCCAAATTTTTCAAAACCCACCGTAAGAATAGACCTCAGAAACTATCCGACCGCACCCGAAACCTCATGGCTAGTCGACGTTTGATGACGCTCCAAACTTCGGAGGACGCTGAGTCATATAGGCAACTCAATAGACATATCATGAAGTCCTTGCGACACGACCTACGCTCCTTTAATACTCAGCGTATCAAAGAGACGATTGAGCGAAACCAAGGCTCTAAAGTGTTCGCAAGAGACGCTTCTATTGGGCAAAGCCAGCTGACGAAGCTGAAGACCGAAGATGGACGTGTAACGTCGAATAAGTCAGAGGTCCTGCGGGAGATAGAGAGGTTCTACGGGCAGCTGTTTACCTCGGTCTCAGCTGAACCGCAAGGTTTAGCTGCAGACCCTAGAGCCAAGCTAACCCGACACTTCACAGAAGACATCCCGGACATCAGCCTGTACGAGATTAGGATGGCTCTCAAACAGCTTAAGAATAACAAGGCACCGGGCGAGGATGGAATTACTACGGAGCTTCTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTCTTCAATTCCTCTTTGCTCGATGGAAAACCGCCACAGGCATGGAACAGGGGTGTTGTGATCCTGTTCTTCAAAAAAGGTGACAAAACCTTATTGAAGAACTATAGGCCCATAGCACTGCTGAGCCATGTCTACAAGCTGTTCTCGAGAGTCATCACGAAGCGTCTCGAACGCAGGTTTGATGACTTCCAGCCTACCGAACAAGCCGGTTTCCGAAAAGGCTACAGTACCATAGACCACATACATACGCTGCGGCAGATTGTACAGAAGACCGAAGAGTACAATCGGCCATTATGCTTAGCGTTTGTGGACTATGAGAAAGCCTTTGATTCCGTCGAAACATGGGCGGTCCTTAGATCTCTCCAGCGGTGCCGTATTGACCACCGGTACATCGAAGTATTGAAGTGTTTGTATAATAACGCCACCATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCCCTGTAAAGAGAGGAGTGAGACAGGGAGATGTGATATCTCCGAAACTGTTTATCACTGCTCTGGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGACTTGGCATCAATATTAACGGCGAATACATCACTCATCTTCGGTTTGCCGATGACATCGTGGTCATGGCAGAGTCGCTGAAAGATTTAAGGCGTATGCTCGGTGACCTCAGTAGGGTTTCTCAACAAGTGGGTCTTAAAATGAACATGGACAAAACCAAAATCATGTACAATGTCCATGTTGCACCCACCATAGTTACTGTTGGGAGCTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTAGGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGCCTTAAGACAAAGGCGTACAACCGATGTGTGTTACCAGTGATGACTTACGGCTCGGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCGCGCAGCGAGCTATGGAGAGGGCTATGCTCGGCATTTCTCTACGTGATCGAATCCGAAATGAGGAGATCCGTAGAAGAACGAAGGTTGCTGACATAGCCCGTAGAATTAGTGAACTGAAGTGGCAATGGGCCGGCCACATAGCACGAAGAGAGGACGGTCGATGGGGCAGAAAGATCCTGGAGTGGCGACCACGTACTGGCAAGCGCAGTGTGGGACGGCCACCTACTAGATGGACCGACGACCTAGTAAAAAGCGCTGGGTCTCGTTGGATGCAGGTGGCAATGGACCGGTCACACTGGAAATCTATTGGAGAGGCCTATGTTCAGCAGTGGACGGCGATAGGCTGA
Protein
MIVHRRTRPLVPGGPAIPGYGSGHGNGGARGAKNPRQRSGYHPPSQRQLALVTYNVRTLRLDEKLIELEEEMNKLRWDVIGLSEIRREGEDTKTLQSGHLFYYREGEQKSQGGVGFIVHKSLINNIVAIESVSSRVVYLVLKISKRYSLKIVQVYAPSTSHPDDEVEATYEDISRAIRNSQSHFTVVMGDFNAKLGRRGDDELKVGPFGFGQRNPRGQMLANFMEKEGLFMMNSFFKKPPQRKWTWLSPDGVTRNEIDFIMSTNKQIFNDVSVINSVKTGSDHRIVRGMLNINVRLERSRLMKSTLRPSNAQIQNPESFQLELANRFEWLNSCASVDDVNSRLVETVRTVGSKFFKTHRKNRPQKLSDRTRNLMASRRLMTLQTSEDAESYRQLNRHIMKSLRHDLRSFNTQRIKETIERNQGSKVFARDASIGQSQLTKLKTEDGRVTSNKSEVLREIERFYGQLFTSVSAEPQGLAADPRAKLTRHFTEDIPDISLYEIRMALKQLKNNKAPGEDGITTELLKAGGTPVLKVLQKLFNSSLLDGKPPQAWNRGVVILFFKKGDKTLLKNYRPIALLSHVYKLFSRVITKRLERRFDDFQPTEQAGFRKGYSTIDHIHTLRQIVQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDHRYIEVLKCLYNNATMSVRVQEHCTKEIPVKRGVRQGDVISPKLFITALEDSFKLLEWQGLGININGEYITHLRFADDIVVMAESLKDLRRMLGDLSRVSQQVGLKMNMDKTKIMYNVHVAPTIVTVGSSTLEVVDEYIYLGQAVRLGRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNRCVLPVMTYGSETWCFTRDLFRRLKVAQRAMERAMLGISLRDRIRNEEIRRRTKVADIARRISELKWQWAGHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSRWMQVAMDRSHWKSIGEAYVQQWTAIG

Summary

Similarity
Belongs to the integrin beta chain family.
Feature
chain  Integrin beta
EMBL
FJ265543    ADI61811.1    FJ265544    ADI61812.1    FJ265549    ADI61817.1    + More
RSAL01000057    RVE49824.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    FJ265551    ADI61819.1    RSAL01000220    RVE44071.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265561    ADI61829.1    GBBI01004877    JAC13835.1    FJ265564    ADI61832.1    FJ265562    ADI61830.1    GDKW01001596    JAI54999.1    GBBI01004876    JAC13836.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    MRZV01002136    PIK34564.1    FJ265563    ADI61831.1    JARK01001655    EYB84321.1    DS268444    EFP01729.1    DS268591    EFO92565.1    JARK01001354    EYC21986.1    ODYU01008249    SOQ51673.1    JARK01001621    EYB86109.1    AF054983    AAC72298.1    JARK01001626    EYB85833.1    JARK01000460    EYC36749.1    JARK01001340    EYC30828.1    GBGD01000453    JAC88436.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01001531    EYB92324.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    DS268505    EFP13372.1    JARK01001711    EYB81734.1    GBGD01000380    JAC88509.1    JARK01000063    EYC44387.1    JARK01001353    EYC22263.1    JARK01001421    EYC04912.1    EYC33297.1    JARK01000109    EYC42952.1    EYC30744.1    JARK01001372    EYC15614.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001497    EYB95322.1    JARK01001389    EYC10874.1    DS268752    EFP01106.1    JARK01001344    EYC28216.1    JARK01001581    EYB88505.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01000161    EYC41641.1    JARK01001401    EYC08686.1    JARK01000302    EYC38674.1    JARK01000008    EYC46079.1    JARK01001407    EYC07212.1    JARK01001612    EYB86585.1    EYB95049.1    JARK01001475    EYB97550.1    JARK01001346    EYC26445.1    JARK01001582    EYB88498.1    EYC03125.1    JARK01001357    EYC20551.1    JARK01001618    EYB86258.1   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00362   Integrin_beta
PF13520   AA_permease_2
PF03372   Exo_endo_phos
PF00069   Pkinase
PF00201   UDPGT
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR017441   Protein_kinase_ATP_BS       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
IPR002213   UDP_glucos_trans       
SUPFAM
SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF56112   SSF56112       
Gene 3D
PDB
6AR3     E-value=1.08209e-06,     Score=130

Ontologies

Topology

Subcellular location
Membrane  
Length:
993
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0345700000000001
Exp number, first 60 AAs:
0.00202
Total prob of N-in:
0.00137
outside
1  -  993
 
 

Population Genetic Test Statistics

Pi
2.968802
Theta
3.08346
Tajima's D
0.421736
CLR
18.080996
CSRT
0.533373331333433
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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