Gene

KWMTBOMO14230

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(-):21068440-21071571      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Mitochondrial   Reliability : 1.796 Nuclear   Reliability : 2.073

CDS

ATGATTGTACACCGCAGAACCAGGCCCCTAGTCCCCGGCGGCCCCGCTATTCCTGGTTACGGTAGCGGCCATGGTAACGGCGGGGCAAGGGGTGCTAAGAATCCCCGGCAGAGATCCGGCTACCACCCCCCTTCACAACGACAACTGGCCCTGGTGACATACAACGTGCGCACTTTGAGGTTGGACGAGAAGCTAATAGAGCTGGAAGAAGAAATGAACAAGTTGCGCTGGGACGTTATTGGTTTATCGGAGATCCGAAGAGAGGGGGAGGATACGAAAACCTTACAGTCCGGCCACTTGTTCTACTACCGGGAGGGAGAACAGAAGTCCCAAGGTGGTGTTGGGTTTATCGTCCACAAATCTCTCATAAACAACATTGTGGCCATCGAAAGTGTGTCGAGTAGGGTAGTATACCTTGTCCTCAAAATCTCAAAGCGGTATTCGCTGAAGATTGTACAGGTATACGCCCCATCGACGTCACATCCAGACGATGAAGTGGAGGCTACGTATGAGGACATTAGTAGGGCCATACGTAACTCCCAATCACATTTTACCGTTGTTATGGGAGATTTCAATGCAAAACTGGGCCGTAGAGGCGATGATGAGTTGAAAGTGGGGCCATTTGGATTTGGGCAGCGGAATCCCAGAGGACAGATGCTGGCGAACTTTATGGAGAAGGAAGGACTCTTTATGATGAATTCTTTCTTCAAGAAGCCGCCACAGCGGAAATGGACCTGGTTGAGTCCCGACGGTGTAACAAGAAATGAAATTGACTTCATCATGAGCACCAACAAACAGATATTCAACGATGTCTCTGTGATCAACAGTGTTAAAACAGGAAGTGATCACCGAATCGTCAGAGGCATGTTGAATATCAATGTCAGACTGGAAAGATCGCGTCTGATGAAGTCAACGCTTCGACCGTCGAATGCACAAATCCAAAACCCCGAGAGCTTTCAACTCGAATTGGCTAATCGCTTCGAATGGCTAAACAGCTGCGCATCAGTGGACGATGTAAACAGCAGGCTGGTAGAGACTGTCCGTACGGTAGGGTCCAAATTTTTCAAAACCCACCGTAAGAATAGACCTCAGAAACTATCCGACCGCACCCGAAACCTCATGGCTAGTCGACGTTTGATGACGCTCCAAACTTCGGAGGACGCTGAGTCATATAGGCAACTCAATAGACATATCATGAAGTCCTTGCGACACGACCTACGCTCCTTTAATACTCAGCGTATCAAAGAGACGATTGAGCGAAACCAAGGCTCTAAAGTGTTCGCAAGAGACGCTTCTATTGGGCAAAGCCAGCTGACGAAGCTGAAGACCGAAGATGGACGTGTAACGTCGAATAAGTCAGAGGTCCTGCGGGAGATAGAGAGGTTCTACGGGCAGCTGTTTACCTCGGTCTCAGCTGAACCGCAAGGTTTAGCTGCAGACCCTAGAGCCAAGCTAACCCGACACTTCACAGAAGACATCCCGGACATCAGCCTGTACGAGATTAGGATGGCTCTCAAACAGCTTAAGAATAACAAGGCACCGGGCGAGGATGGAATTACTACGGAGCTTCTGAAAGCGGGCGGGACGCCGGTACTGAAAGTCCTTCAGAAGCTCTTCAATTCCTCTTTGCTCGATGGAAAACCGCCACAGGCATGGAACAGGGGTGTTGTGATCCTGTTCTTCAAAAAAGGTGACAAAACCTTATTGAAGAACTATAGGCCCATAGCACTGCTGAGCCATGTCTACAAGCTGTTCTCGAGAGTCATCACGAAGCGTCTCGAACGCAGGTTTGATGACTTCCAGCCTACCGAACAAGCCGGTTTCCGAAAAGGCTACAGTACCATAGACCACATACATACGCTGCGGCAGATTGTACAGAAGACCGAAGAGTACAATCGGCCATTATGCTTAGCGTTTGTGGACTATGAGAAAGCCTTTGATTCCGTCGAAACATGGGCGGTCCTTAGATCTCTCCAGCGGTGCCGTATTGACCACCGGTACATCGAAGTATTGAAGTGTTTGTATAATAACGCCACCATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCCCTGTAAAGAGAGGAGTGAGACAGGGAGATGTGATATCTCCGAAACTGTTTATCACTGCTCTGGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGACTTGGCATCAATATTAACGGCGAATACATCACTCATCTTCGGTTTGCCGATGACATCGTGGTCATGGCAGAGTCGCTGAAAGATTTAAGGCGTATGCTCGGTGACCTCAGTAGGGTTTCTCAACAAGTGGGTCTTAAAATGAACATGGACAAAACCAAAATCATGTACAATGTCCATGTTGCACCCACCATAGTTACTGTTGGGAGCTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTAGGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGCCTTAAGACAAAGGCGTACAACCGATGTGTGTTACCAGTGATGACTTACGGCTCGGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCGCGCAGCGAGCTATGGAGAGGGCTATGCTCGGCATTTCTCTACGTGATCGAATCCGAAATGAGGAGATCCGTAGAAGAACGAAGGTTGCTGACATAGCCCGTAGAATTAGTGAACTGAAGTGGCAATGGGCCGGCCACATAGCACGAAGAGAGGACGGTCGATGGGGCAGAAAGATCCTGGAGTGGCGACCACGTACTGGCAAGCGCAGTGTGGGACGGCCACCTACTAGATGGACCGACGACCTAGTAAAAAGCGCTGGGTCTCGTTGGATGCAGGTGGCAATGGACCGGTCACACTGGAAATCTATTGGAGAGGCCTATGTTCAGCAGTGGACGGCGATAGGCTGA

Protein

MIVHRRTRPLVPGGPAIPGYGSGHGNGGARGAKNPRQRSGYHPPSQRQLALVTYNVRTLRLDEKLIELEEEMNKLRWDVIGLSEIRREGEDTKTLQSGHLFYYREGEQKSQGGVGFIVHKSLINNIVAIESVSSRVVYLVLKISKRYSLKIVQVYAPSTSHPDDEVEATYEDISRAIRNSQSHFTVVMGDFNAKLGRRGDDELKVGPFGFGQRNPRGQMLANFMEKEGLFMMNSFFKKPPQRKWTWLSPDGVTRNEIDFIMSTNKQIFNDVSVINSVKTGSDHRIVRGMLNINVRLERSRLMKSTLRPSNAQIQNPESFQLELANRFEWLNSCASVDDVNSRLVETVRTVGSKFFKTHRKNRPQKLSDRTRNLMASRRLMTLQTSEDAESYRQLNRHIMKSLRHDLRSFNTQRIKETIERNQGSKVFARDASIGQSQLTKLKTEDGRVTSNKSEVLREIERFYGQLFTSVSAEPQGLAADPRAKLTRHFTEDIPDISLYEIRMALKQLKNNKAPGEDGITTELLKAGGTPVLKVLQKLFNSSLLDGKPPQAWNRGVVILFFKKGDKTLLKNYRPIALLSHVYKLFSRVITKRLERRFDDFQPTEQAGFRKGYSTIDHIHTLRQIVQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDHRYIEVLKCLYNNATMSVRVQEHCTKEIPVKRGVRQGDVISPKLFITALEDSFKLLEWQGLGININGEYITHLRFADDIVVMAESLKDLRRMLGDLSRVSQQVGLKMNMDKTKIMYNVHVAPTIVTVGSSTLEVVDEYIYLGQAVRLGRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNRCVLPVMTYGSETWCFTRDLFRRLKVAQRAMERAMLGISLRDRIRNEEIRRRTKVADIARRISELKWQWAGHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSRWMQVAMDRSHWKSIGEAYVQQWTAIG

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

D7F158   D7F159   D7F164   A0A437BHD1   D7F157   D7F165   + More
D7F160   D7F166   A0A437B0R4   A0A2H1VS24   A0A2W1BZV1   D7F176   A0A023EWU8   D7F179   D7F177   A0A0P4VWD0   A0A0K0FAW8   A0A023EXV2   A0A016SG46   A0A016TK11   A0A016W4R1   A0A2G8JFM9   D7F178   A0A016S1D2   E3MH09   E3NC15   A0A016V419   A0A2H2JFN0   A0A2H1WF27   A0A016S795   Q9TZX4   K7IG35   A0A016S5B2   A0A016WA79   A0A016VVN3   A0A069DX96   K7IBZ6   K7IBZ5   A0A2H2J8I4   A0A016T7J7   K7I2A3   K7IG36   K7ICT1   K7ICT2   K7H0Q9   K7H0R0   A0A0N5C0B1   A0A016WPY4   K7I2A2   A0A016WCB8   K7HDM3   K7HDM2   K7I2A1   A0A016ULU9   K7H0Q8   A0A016SPR9   A0A016SX67   E3N0F4   A0A016RUR3   A0A069DZM5   A0A016WYN9   A0A016V6A2   A0A016TQJ1   A0A016W1X2   A0A016WUN2   A0A016VT25   A0A016UJS4   A0A016SCL7   A0A016SY13   A0A016U6B7   E3NJQ7   A0A016VLP0   A0A016SCZ8   A0A016RV73   A0A016WPX9   A0A016U123   A0A016WFS9   A0A016X207   A0A016TX70   A0A016S7F6   A0A016SXL6   A0A016T4C4   A0A016VGA0   A0A016SCT9   A0A016TK92   A0A016V007   A0A2H2JKG1   A0A016S6J0   A0A2H2ITH9   A0A2H2JKX8   A0A2H2JCS8  

Pubmed

20470440    28756777    25474469    27129103    25730766    29023486    + More
8603714    9729877    26334808   

EMBL

FJ265543    ADI61811.1    FJ265544    ADI61812.1    FJ265549    ADI61817.1    + More
RSAL01000057    RVE49824.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    FJ265551    ADI61819.1    RSAL01000220    RVE44071.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265561    ADI61829.1    GBBI01004877    JAC13835.1    FJ265564    ADI61832.1    FJ265562    ADI61830.1    GDKW01001596    JAI54999.1    GBBI01004876    JAC13836.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    MRZV01002136    PIK34564.1    FJ265563    ADI61831.1    JARK01001655    EYB84321.1    DS268444    EFP01729.1    DS268591    EFO92565.1    JARK01001354    EYC21986.1    ODYU01008249    SOQ51673.1    JARK01001621    EYB86109.1    AF054983    AAC72298.1    JARK01001626    EYB85833.1    JARK01000460    EYC36749.1    JARK01001340    EYC30828.1    GBGD01000453    JAC88436.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01001531    EYB92324.1    JARK01001500    JARK01001343    EYB95040.1    EYC28825.1    DS268505    EFP13372.1    JARK01001711    EYB81734.1    GBGD01000380    JAC88509.1    JARK01000063    EYC44387.1    JARK01001353    EYC22263.1    JARK01001421    EYC04912.1    EYC33297.1    JARK01000109    EYC42952.1    EYC30744.1    JARK01001372    EYC15614.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001497    EYB95322.1    JARK01001389    EYC10874.1    DS268752    EFP01106.1    JARK01001344    EYC28216.1    JARK01001581    EYB88505.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01000161    EYC41641.1    JARK01001401    EYC08686.1    JARK01000302    EYC38674.1    JARK01000008    EYC46079.1    JARK01001407    EYC07212.1    JARK01001612    EYB86585.1    EYB95049.1    JARK01001475    EYB97550.1    JARK01001346    EYC26445.1    JARK01001582    EYB88498.1    EYC03125.1    JARK01001357    EYC20551.1    JARK01001618    EYB86258.1   

Proteomes

UP000283053    UP000035680    UP000024635    UP000230750    UP000008281    UP000005237    + More
UP000046392   

PRIDE

D7F158    D7F159    D7F164    D7F157    D7F165    D7F160    + More
D7F166    D7F176    D7F179    D7F177    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00362   Integrin_beta
PF13520   AA_permease_2
PF03372   Exo_endo_phos
PF00069   Pkinase
PF00201   UDPGT

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR017441   Protein_kinase_ATP_BS       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       
IPR002213   UDP_glucos_trans       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF56112   SSF56112       

Gene 3D

3.60.10.10     3.40.50.410    

CDD

cd06174  MFS

ProteinModelPortal

D7F158   D7F159   D7F164   A0A437BHD1   D7F157   D7F165   + More
D7F160   D7F166   A0A437B0R4   A0A2H1VS24   A0A2W1BZV1   D7F176   A0A023EWU8   D7F179   D7F177   A0A0P4VWD0   A0A0K0FAW8   A0A023EXV2   A0A016SG46   A0A016TK11   A0A016W4R1   A0A2G8JFM9   D7F178   A0A016S1D2   E3MH09   E3NC15   A0A016V419   A0A2H2JFN0   A0A2H1WF27   A0A016S795   Q9TZX4   K7IG35   A0A016S5B2   A0A016WA79   A0A016VVN3   A0A069DX96   K7IBZ6   K7IBZ5   A0A2H2J8I4   A0A016T7J7   K7I2A3   K7IG36   K7ICT1   K7ICT2   K7H0Q9   K7H0R0   A0A0N5C0B1   A0A016WPY4   K7I2A2   A0A016WCB8   K7HDM3   K7HDM2   K7I2A1   A0A016ULU9   K7H0Q8   A0A016SPR9   A0A016SX67   E3N0F4   A0A016RUR3   A0A069DZM5   A0A016WYN9   A0A016V6A2   A0A016TQJ1   A0A016W1X2   A0A016WUN2   A0A016VT25   A0A016UJS4   A0A016SCL7   A0A016SY13   A0A016U6B7   E3NJQ7   A0A016VLP0   A0A016SCZ8   A0A016RV73   A0A016WPX9   A0A016U123   A0A016WFS9   A0A016X207   A0A016TX70   A0A016S7F6   A0A016SXL6   A0A016T4C4   A0A016VGA0   A0A016SCT9   A0A016TK92   A0A016V007   A0A2H2JKG1   A0A016S6J0   A0A2H2ITH9   A0A2H2JKX8   A0A2H2JCS8  

PDB

6AR3     E-value=1.08209e-06,     Score=130

KEGG

105841685    no KO assigned | (RefSeq) uncharacterized LOC105841685

GO

GO:0004519   GO:0003964   GO:0004672   GO:0005524   GO:0016758  

PANTHER

PTHR10082  

Subcellular location

Membrane  

Length:

993

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0345700000000001

Exp number, first 60 AAs:

0.00202

Total prob of N-in:

0.00137

outside

1  -  993

 

 

Pi

2.968802

Theta

3.08346

Tajima's D

0.421736

CLR

18.080996

CSRT

0.533373331333433

Interpretation

Uncertain