Gene

KWMTBOMO14229

Pre Gene Modal

BGIBMGA011112

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(-):21051586-21054431      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Nuclear   Reliability : 2.108

CDS

ATGGGTGAAAGAATTATTTCTCAGCCAGACTTCCTCCTATACCACATTGGAACGACGCCAGGACACCATGGCGTTGGTTTCATCGTCAAAAAATATCTTGAAAAATCTGTAGAAGAATTTATAGGAATCTCGGAGCGCATAGCAATGATGAATTTAAAGTTACCGGGATATAAAGATTCATGGTCTATAGTACAAATATATTCACCAACAGAACAATCGGACCTGGAAACAATTGAGGAATTCTACCTTGACTTAAATAACACTATCCAAGAACGTGCCCACAATAACATAATCGTCATGGGAGATTTCAATGGCCAAATTGGAGCTAAACGTCCAGGAGAAGAGACAGTACTGGGACCATTCACTTACAGTAATAAAATTAGAAGTAGAAATGGAGAAAAACTTATAAATTTTACACTAGAAAATAACTTAACCATTTTAAACTCAGTATATAAAAAAAACACAACGAAAATGTGGACATGGATTTCACCAGATGGAAAAACCAAAAACGAAATAGATTTTATAATGACCAATACAAAGAACTGCTTTACAAATTTCGACGTCATTAATAAATTTAACTTCAATACAAATCATAAACTAATTAGAGCTGAAATAAAATCAGTACAACCAAAGAAACCTAGACCAAGACAGGAACTAACAATCGGTAAGCTCAGCAAGCACCAAATGGCACAACTCGTGGCCAACCTAAGAGATAAACTCACAGACTTCAAAAAGAACACAAATACCAAGGGAACCCAAGAAAAATACAACTGGATAGAGAATATTATTAACGATCAAGTACAACACATTGACAAGATTAGATCTGAACCGAGAAAATGGCTAACATCTAATACCATGAAATTACTAGAGCAAAGAAACCAGCTAATCAGCGCAAAAGAAGGAAAAGACAGAAGAAGGTATTTAGCGAAAATTAGTAAAGACATCAAAGAAAGTATAAGGACGGACAGGAAAAAGAGTAGAATGGAAATTATTGAAAAGCATATAGCCAAAACGGGAGGCATTAAAAAAGCTCATAGAGAATTAACAATTTCAAATGACTGGATCGCAAAGATTAAAAACAACAGCGGAGAATGGCACCATAATAGAAGAAATATATTAGGAATCGCTACGTCCTACTACAAAAAAATCTACGAACACAACACCGCTCAGGACAATATCTACCTAGCAGAAACCTCAAGTATCCCTAACATCATTCAAACTGAAGTAACAAAAGCTATAGATAGTCAACACAGAGACAAAGCACCAGGACCCGATGGCATAAGTAACGAAATTCTAAAAGAAAGTAATGAAATTATAACACCAGTTCTCACCGACATGTTTAATGAGATATTAAAAACCGAAATTATCCCACGGCAATGGACAGAATCAAATATTTTACTTCTATATAAGAAAGGAGACAAATATGACATTGGGAACTACCGCCCTATTAGCCTTATGTCCAACATATACAAGGTATTCGCCAAGGTCATACTTAATCGGATTGAAAAAATATTAGACGAACACCAACCCATCGAGCAGGCGGGATTTCGTAAAGGCTATTCAACGATCGACCACATTCATGTAGTACGCCAAGTAATGGAGAAGTATAAAGAACACCAATGCACCTACTATATCGCATTTATTGATTATAGCAAAGCATTCGATTCTTTGTTTCATGAAAAGGTATGGGAGTCATTAAAAGAACAAGGAATTGAACACAAATACATCCGGTTAATAAAAAATGTTTACAGCCAGAATACTGCGAGAATACAATTAGAAAAGAAAGGTGAACCTTTCAGAGTAGGCAAAGGCGTACGACAAGGAGATCCCCTGTCACCAAAAATATTCTCGGCGGTACTAGAATCCATATTCAGAGCTCTAAATTGGGAAAATCTCGGTATCAATGTAGACGGTGTCTCATTGACTCACTTGAGATTCGCAGATGATATTGTGTTATTTGCAAAATCGTCGGAAGACATCACAAGAATGATAAACGAATTATCAACGGAGAGCGAGAAGGTAGGGTTAAAACTGAACCTGGAAAAAACAAAAATAATGACAAACGGAGAGAGAATTCCCATAAACTTAGGAAACAACCAAATTGATTACACCAATGAATATATTTACTTGGGACAGCTAATAACAGATGATAATCCGGTGCTCAAAGAAGTTGAACGAAGAATAACTAATGGCTGGAGAAGGTACTGGGGCTTGAAAGAAATTATGAAGGACAAAAATCTTCATATGAACATTAAAAGCAAACTATTTAATACTTGCGTACTACCAGTTCTCATGTACGGCAGTCAAACATGGGCTTTATCACAAAACACGATTAGCAAGCTTGCATCATGCCAACGCGCAATGGAGAGGAGCATGATGAACGTGAAAAAGTCAGACCGACTGAGTAACCGTATAATAAGAAGCAAAACAAAGGTAATAGATATAGGGTGCAAAATTAGAAGGCTTAAATGGCGTTGGGCAGGGCATATGGTTAGAGGTAAAGATAAATGGAGCAAAGTTGTGACACAATGGTATCCTAGAGAAAGTAAAAGGAAAAAAGGTAGACCGCAAAAAAGATGGGATGACGACATACGACAAGTGGCAGGCGTCACATGGAACAGAGTGGCTCAAGAAAGACATGAGTGGAAAAGGTTGGAGGAGGCCTTTGTCGATTGGCAAACAGATCTGCAGAAAATAAGAAAAATTCAAATAATAGCCTAG

Protein

MGERIISQPDFLLYHIGTTPGHHGVGFIVKKYLEKSVEEFIGISERIAMMNLKLPGYKDSWSIVQIYSPTEQSDLETIEEFYLDLNNTIQERAHNNIIVMGDFNGQIGAKRPGEETVLGPFTYSNKIRSRNGEKLINFTLENNLTILNSVYKKNTTKMWTWISPDGKTKNEIDFIMTNTKNCFTNFDVINKFNFNTNHKLIRAEIKSVQPKKPRPRQELTIGKLSKHQMAQLVANLRDKLTDFKKNTNTKGTQEKYNWIENIINDQVQHIDKIRSEPRKWLTSNTMKLLEQRNQLISAKEGKDRRRYLAKISKDIKESIRTDRKKSRMEIIEKHIAKTGGIKKAHRELTISNDWIAKIKNNSGEWHHNRRNILGIATSYYKKIYEHNTAQDNIYLAETSSIPNIIQTEVTKAIDSQHRDKAPGPDGISNEILKESNEIITPVLTDMFNEILKTEIIPRQWTESNILLLYKKGDKYDIGNYRPISLMSNIYKVFAKVILNRIEKILDEHQPIEQAGFRKGYSTIDHIHVVRQVMEKYKEHQCTYYIAFIDYSKAFDSLFHEKVWESLKEQGIEHKYIRLIKNVYSQNTARIQLEKKGEPFRVGKGVRQGDPLSPKIFSAVLESIFRALNWENLGINVDGVSLTHLRFADDIVLFAKSSEDITRMINELSTESEKVGLKLNLEKTKIMTNGERIPINLGNNQIDYTNEYIYLGQLITDDNPVLKEVERRITNGWRRYWGLKEIMKDKNLHMNIKSKLFNTCVLPVLMYGSQTWALSQNTISKLASCQRAMERSMMNVKKSDRLSNRIIRSKTKVIDIGCKIRRLKWRWAGHMVRGKDKWSKVVTQWYPRESKRKKGRPQKRWDDDIRQVAGVTWNRVAQERHEWKRLEEAFVDWQTDLQKIRKIQIIA

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

D7F179   D7F176   D7F178   D7F177   A0A2H1WF27   A0A2W1BCS2   + More
A0A069DZM5   A0A2H1VS24   A0A023EXV2   A0A2W1BZV1   D7F157   D7F165   D7F164   D7F166   D7F160   D7F159   D7F158   A0A016S1D2   A0A437BHD1   A0A016T7J7   A0A016T4C4   A0A016S403   A0A016U784   A0A0K0FAW8   A0A016T636   A0A016W1X2   A0A016U6B7   A0A016WYN9   A0A016SCL7   A0A016SY13   A0A016UJS4   A0A016VLP0   A0A016SCZ8   A0A016U123   A0A016WFS9   A0A016X207   A0A016WQM8   A0A016TK92   A0A016SXL6   A0A016VT25   A0A016TQJ1   A0A016WPX9   A0A016S7F6   A0A016WUN2   A0A016VGA0   A0A016S6J0   A0A016V007   A0A016T590   A0A016VEC1   A0A016VCD9   A0A016SCT9   A0A016WS23   A0A016TX70   A0A016S4W9   A0A016WPY4   A0A016WN14   A0A016WNH0   A0A016VCU3   A0A016T5Z1   A0A016S4J2   A0A016SWH8   A0A016SPR9   A0A016WCB8   A0A016ULU9   A0A016WRX9   A0A016SG46   A0A016S3N7   A0A016SGC3   A0A016WA79   A0A016VBP7   A0A016TK11   A0A016SQY7   A0A016VVN3   A0A016W4R1   A0A016S795   A0A016S5B2   A0A016URH5   A0A016S7C1   A0A016S709   A0A016US53   A0A016SX67   A0A016X1I0   A0A016X288   A0A016V419   A0A016WYI0   A0A016TL35   A0A016U7L9   A0A0N5C0B1   A0A016RRX8   A0A016RUR3   A0A016SD71   A0A016WVQ3   A0A016RV73   A0A016UEM0   A0A0P4VWD0   A0A016WEQ1  

Pubmed

20470440    28756777    26334808    25474469    25730766    27129103    + More

EMBL

FJ265564    ADI61832.1    FJ265561    ADI61829.1    FJ265563    ADI61831.1    + More
FJ265562    ADI61830.1    ODYU01008249    SOQ51673.1    KZ150485    PZC70710.1    GBGD01000380    JAC88509.1    ODYU01004088    SOQ43598.1    GBBI01004876    JAC13836.1    KZ149907    PZC78256.1    FJ265542    ADI61810.1    FJ265550    ADI61818.1    FJ265549    ADI61817.1    FJ265551    ADI61819.1    FJ265545    ADI61813.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    JARK01001655    EYB84321.1    RSAL01000057    RVE49824.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001475    EYB97550.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01001470    JARK01000204    EYB98081.1    EYC40601.1    EYC33297.1    EYC10874.1    JARK01000063    EYC44387.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001497    EYB95322.1    JARK01001372    EYC15614.1    JARK01001344    EYC28216.1    JARK01001581    EYB88505.1    JARK01001401    EYC08686.1    JARK01000302    EYC38674.1    JARK01000008    EYC46079.1    JARK01000165    EYC41537.1    EYC03125.1    JARK01001500    EYB95049.1    JARK01001340    EYC30744.1    JARK01001421    EYC04912.1    JARK01000161    EYC41641.1    JARK01001612    EYB86585.1    JARK01000109    EYC42952.1    JARK01001346    EYC26445.1    JARK01001618    EYB86258.1    JARK01001357    EYC20551.1    JARK01001473    EYB97806.1    JARK01001348    EYC25048.1    EYC25050.1    JARK01001582    EYB88498.1    JARK01000146    EYC42042.1    JARK01001407    EYC07212.1    JARK01001637    EYB85284.1    JARK01000173    EYC41342.1    JARK01000177    EYC41209.1    EYC41210.1    EYC25046.1    EYB98082.1    EYC40602.1    EYB85282.1    JARK01001502    EYB94855.1    JARK01001531    EYB92324.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    JARK01000132    EYC42415.1    JARK01001565    EYB89683.1    EYB85285.1    JARK01001568    EYB89432.1    JARK01000460    EYC36749.1    EYC25049.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001524    EYB92970.1    EYC30828.1    JARK01001337    EYC34625.1    JARK01001621    EYB86109.1    JARK01001626    EYB85833.1    JARK01001365    EYC18009.1    EYB86257.1    EYB86256.1    EYC18010.1    JARK01001343    EYB95040.1    EYC28825.1    JARK01000030    EYC45382.1    EYC45383.1    JARK01001354    EYC21986.1    JARK01000046    EYC44894.1    JARK01001428    EYC03684.1    JARK01001388    EYC11165.1    JARK01001730    EYB81048.1    JARK01001711    EYB81734.1    JARK01001580    EYB88618.1    JARK01000077    EYC43894.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    JARK01001380    EYC13322.1    GDKW01001596    JAI54999.1    JARK01000347    EYC38051.1   

Proteomes

UP000024635    UP000283053    UP000035680    UP000046392   

PRIDE

D7F179    D7F176    D7F178    D7F177    D7F157    D7F165    + More
D7F164    D7F166    D7F160    D7F159    D7F158   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00362   Integrin_beta

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR029052   Metallo-depent_PP-like       
IPR017452   GPCR_Rhodpsn_7TM       
IPR036423   SOD-like_Cu/Zn_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF49329   SSF49329       

Gene 3D

3.60.10.10     3.40.50.410     3.60.21.10     2.60.40.200    

ProteinModelPortal

D7F179   D7F176   D7F178   D7F177   A0A2H1WF27   A0A2W1BCS2   + More
A0A069DZM5   A0A2H1VS24   A0A023EXV2   A0A2W1BZV1   D7F157   D7F165   D7F164   D7F166   D7F160   D7F159   D7F158   A0A016S1D2   A0A437BHD1   A0A016T7J7   A0A016T4C4   A0A016S403   A0A016U784   A0A0K0FAW8   A0A016T636   A0A016W1X2   A0A016U6B7   A0A016WYN9   A0A016SCL7   A0A016SY13   A0A016UJS4   A0A016VLP0   A0A016SCZ8   A0A016U123   A0A016WFS9   A0A016X207   A0A016WQM8   A0A016TK92   A0A016SXL6   A0A016VT25   A0A016TQJ1   A0A016WPX9   A0A016S7F6   A0A016WUN2   A0A016VGA0   A0A016S6J0   A0A016V007   A0A016T590   A0A016VEC1   A0A016VCD9   A0A016SCT9   A0A016WS23   A0A016TX70   A0A016S4W9   A0A016WPY4   A0A016WN14   A0A016WNH0   A0A016VCU3   A0A016T5Z1   A0A016S4J2   A0A016SWH8   A0A016SPR9   A0A016WCB8   A0A016ULU9   A0A016WRX9   A0A016SG46   A0A016S3N7   A0A016SGC3   A0A016WA79   A0A016VBP7   A0A016TK11   A0A016SQY7   A0A016VVN3   A0A016W4R1   A0A016S795   A0A016S5B2   A0A016URH5   A0A016S7C1   A0A016S709   A0A016US53   A0A016SX67   A0A016X1I0   A0A016X288   A0A016V419   A0A016WYI0   A0A016TL35   A0A016U7L9   A0A0N5C0B1   A0A016RRX8   A0A016RUR3   A0A016SD71   A0A016WVQ3   A0A016RV73   A0A016UEM0   A0A0P4VWD0   A0A016WEQ1  

PDB

6AR3     E-value=0.000113353,     Score=112

KEGG

101743597    K16677 dachs | (RefSeq) myosin IA heavy chain

PATHWAY

04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006801   GO:0046872  

PANTHER

PTHR10082  

Subcellular location

Membrane  

Length:

906

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0514800000000001

Exp number, first 60 AAs:

0.04441

Total prob of N-in:

0.00243

outside

1  -  906

 

 

Pi

0.508185

Theta

0.525777

Tajima's D

0

CLR

0.043933

CSRT

0.443077846107695

Interpretation

Uncertain