Silkworm Genome Informatics Database

Gene

KWMTBOMO14227

Pre Gene Modal

BGIBMGA004258

Annotation

PREDICTED:_exportin-5-like_[Plutella_xylostella]

Location

Bomo_Chr23(-):21002721-21003811 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.1

CDS

ATGTCGTCAGAAAGTGACGGCGATGATGAGGGAAAAAGAAACGAGGCGAAAAAACGCAGATATCAAGGGGACGACGGACTATCAGATTCGGACTACATTTATAAACCTTTTCTCAAACCTGGGTACCGTCGTAGTTATCCTGATAACTCTCTTAATGACGAGTTTCCTGTCTACATCGAAGGTATCAGTAGAGAAGATAAAATTGGTAACAAAAATCCTTTACTTTTATCAAAAATATTTAAGTCGGTGAAGGGCATCAAAGAGAACAGGCGCATTAATGCTAATAAAATAATGCTTATATTTAAACAGGCAGTGGCTGCCAATGATTTTATAAACCATAATTGCCTTAAAGAAAATAACATGAAAGCTTACATTCCGGCATCTTCAGTGGAGCGTGTGGGGAAAATAAGATTCATTCCTACAGAAACGAGTAACACTGAACTCTTCGACAAATTAATATCAGATTCAGAAATCATTGCTCAAAACAATATGCTACAGTTGTATCTAAAGAATTTCCACCTTTGCAAAGACTTCAGAACAGACCAGATCATTCAACACAAAAGAATCAAATTAAATCACAGGCCTTAA

Protein

MSSESDGDDEGKRNEAKKRRYQGDDGLSDSDYIYKPFLKPGYRRSYPDNSLNDEFPVYIEGISREDKIGNKNPLLLSKIFKSVKGIKENRRINANKIMLIFKQAVAANDFINHNCLKENNMKAYIPASSVERVGKIRFIPTETSNTELFDKLISDSEIIAQNNMLQLYLKNFHLCKDFRTDQIIQHKRIKLNHRP

Uniprot

H9JGP6 A0A212FNZ5 A0A3S2LWP0 H9JRY0 A0A212ENX5 A0A212F9P6 + More
A0A3S2N3P1 A0A0L7L7X7

Pubmed

19121390 22118469 26227816

EMBL

BABH01034286 BABH01034287 AGBW02004392 OWR55429.1 RSAL01000152 RVE45705.1 + More
BABH01016974 AGBW02013573 OWR43205.1 AGBW02009564 OWR50429.1 RSAL01002015 RVE40604.1 JTDY01002411 KOB71465.1

Proteomes

UP000005204 UP000007151 UP000283053 UP000037510

PRIDE

H9JGP6 H9JRY0

Pfam

PF14529   Exo_endo_phos_2        + More
PF00075   RNase_H
PF05653   Mg_trans_NIPA
PF00078   RVT_1

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase
IPR002156   RNaseH_domain
IPR036397   RNaseH_sf
IPR012337   RNaseH-like_sf
IPR008521   Mg_trans_NIPA
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219 + More
SSF53098 SSF53098

Gene 3D

3.60.10.10 3.30.420.10

ProteinModelPortal

H9JGP6 A0A212FNZ5 A0A3S2LWP0 H9JRY0 A0A212ENX5 A0A212F9P6 + More
A0A3S2N3P1 A0A0L7L7X7

KEGG

NA

GO

GO:0003964 GO:0016021 GO:0004523 GO:0003676

PANTHER

PTHR12570

Length:

195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0031

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07247

outside

1 - 195

Pi

6.510501

Theta

8.846086

Tajima's D

-0.768268

CLR

0.432496

CSRT

0.183340832958352

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree