Silkworm Genome Informatics Database

Gene

KWMTBOMO14226

Pre Gene Modal

BGIBMGA011150

Annotation

PREDICTED:_uncharacterized_protein_LOC105841611_[Bombyx_mori]

Location

Bomo_Chr23(+):20990252-20993394 View in EpiBrowser

Transcription factor

THAP

Location in the cell

Nuclear Reliability : 3.365

CDS

ATGCCTTACTACTGTACGGTACCCCGCTGCACATCGATGGCGGGAAAAGCCAAAAACGTATCTTTTCACCAGTTCCCTAGAGACGAAGAGTTAGCAAAACTCTGGAATAACATATTAAAGAGAGGCAAACCATATACAAAATATTCTAAAGTTTGCAGTTTGCACTTCAAACCGGAAGACTATACTTTGACCAGCGTCGGAAAAAACAAAGGCCAATGGAGAACATTGCGTAAGGATGCAATACCATCAAGAAATTTACCGTCAGATTCTCCACTTCCTTACCAGAGAAGGCAGTCGGATAGCTGGTTGCCAGTCACCAACAGTCCTTTGGACCCTCAGGTTCAACAGCAAATGGCGCAAGCTATTTACATACAGACCATGCTAGCTATGCAAGCAGTCACAAATGATGCCCCAAGTCCAAATAATGAAGAAACAACGAGTTCAGAAGATTCATATCAACAGGAGAAAAATGATTCTGCAATGCCGACCTTTGTTAATGATGAAACAAAAACGTCATACAAATGCAAAGTGTGCACTAAATGCTTCAAGGACCCCGATGTAATGCTATTGCACCAGCGGACGCACAATAACTCTATTAATGAACCTAATTCGATGACCATGCAAGCCAATCCTATTTTAGCCGGTCTCCTGAGGAATAACAGCGAGACGGCCAATGGTAATCTCTTTGCAGCCCTAGCTCTCAATTTGGTGGTCCAAAATCTGTTCGAAGGTAAGAAAACTTGTGAGGAATTAAAAGGGATATCCGCTAAATACGTTGTAGACGAAACGTAA

Protein

MPYYCTVPRCTSMAGKAKNVSFHQFPRDEELAKLWNNILKRGKPYTKYSKVCSLHFKPEDYTLTSVGKNKGQWRTLRKDAIPSRNLPSDSPLPYQRRQSDSWLPVTNSPLDPQVQQQMAQAIYIQTMLAMQAVTNDAPSPNNEETTSSEDSYQQEKNDSAMPTFVNDETKTSYKCKVCTKCFKDPDVMLLHQRTHNNSINEPNSMTMQANPILAGLLRNNSETANGNLFAALALNLVVQNLFEGKKTCEELKGISAKYVVDET

Uniprot

H9JNP6 A0A437AYH4 A0A2W1BAE2 A0A2H1V905 A0A2A4JK10 A0A212ELG5 + More
A0A194PUE9 A0A194RMX0 A0A0L7LU54 A0A147BDP8

Pubmed

19121390 28756777 22118469 26354079 26227816 29652888 + More

EMBL

BABH01035188 BABH01035189 RSAL01000274 RVE43133.1 KZ150223 PZC72078.1 + More
ODYU01001307 SOQ37333.1 NWSH01001313 PCG71740.1 AGBW02014062 OWR42332.1 KQ459593 KPI96379.1 KQ460152 KPJ17346.1 JTDY01000119 KOB78741.1 GEGO01006501 JAR88903.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000007151 UP000053268 UP000053240 + More
UP000037510

PRIDE

H9JNP6

Pfam

PF05485 THAP

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR006612   THAP_Znf
IPR013087   Znf_C2H2_type
IPR038441   THAP_Znf_sf
IPR026516   THAP1

SUPFAM

SSF57667 SSF57667

Gene 3D

3.30.40.180

ProteinModelPortal

H9JNP6 A0A437AYH4 A0A2W1BAE2 A0A2H1V905 A0A2A4JK10 A0A212ELG5 + More
A0A194PUE9 A0A194RMX0 A0A0L7LU54 A0A147BDP8

PDB

2D8R E-value=1.03302e-06, Score=124

KEGG

105841611 K23203 THAP domain-containing protein 1/3 | (RefSeq) uncharacterized LOC105841611

GO

GO:0003677 GO:0003676 GO:0046872 GO:0015074 GO:0006355 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR46600:SF1

Length:

263

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05975

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08870

outside

1 - 263

Pi

0.337988

Theta

1.653125

Tajima's D

-1.913497

CLR

20.406152

CSRT

0.0123993800309985

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics