Gene

KWMTBOMO14219

Annotation

PREDICTED:_loss_of_heterozygosity_12_chromosomal_region_1_protein_homolog_[Papilio_polytes]

Location

Bomo_Chr23(+):20761462-20767299      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.499

CDS

ATGGGTTCAGAACAGTCATCGGTACCACCTAAAAGGCAAACCCAAAGAGTGCCACTAGTACGGAGAGGCTATACTATTGCTGTCTCCAATGTACAAGAAACATCAAGGCATGATCAGCAGACGAGTGGAAACAATTCACCAGGAGCAAGTGTTTGCTCCGACTCGGAACTGCCTTACATATCATATACTGTTGATCGACCTATAGGGGATTCCCCGAAGGCAGCTTCGAAGAGCCAGAGGATCACAGACAAGAAGTCGTTGCTGCAACGCCGCCAGTTGAGCCTGCAGGCGCGTAAGGCGAGACGCACACGGGACATCGTCGTGGTCAAGCCAGCCACTGACGAACAGCTGGACGAGGATATAAGGAGATTACAGGAAATACCAACGTTTTTGCCGATAATGAGAGGTACCTTAGGATTGCCCGGAGCTAGAGACACTGAAATATTAGAAGGTCTAGATTATAAGCCTTGGGTCCGATTGACAACAAGGTTGCAGGCGCATTTAGCGGCCTGTGCTCATCCACTAGCAGCCGAAGAAGTCAGCCTGGCGTCCAAGATCAAAGAATCAGATGCGGAAATAGCTCGCTTGTACAGTCAGCTAGTCGACAGACAGAGGACCAACGCGAGGCACGCCGAGAGGCTCTCCCGTGTCCACGAGGTGGCTCATCAGCTCTCCCGCTGCAATTCCTTATTGAATCAGACCATACAAGACATTGAAGAGTTAAATTTAATTTTACCCGAAGATAAAAGGTTAGCTCCCTTTGTTTGGAACGAAGAGCATTGA

Protein

MGSEQSSVPPKRQTQRVPLVRRGYTIAVSNVQETSRHDQQTSGNNSPGASVCSDSELPYISYTVDRPIGDSPKAASKSQRITDKKSLLQRRQLSLQARKARRTRDIVVVKPATDEQLDEDIRRLQEIPTFLPIMRGTLGLPGARDTEILEGLDYKPWVRLTTRLQAHLAACAHPLAAEEVSLASKIKESDAEIARLYSQLVDRQRTNARHAERLSRVHEVAHQLSRCNSLLNQTIQDIEELNLILPEDKRLAPFVWNEEH

Uniprot

A0A2H1VSE4   A0A0N1PIY1   A0A194PSI6   S4PWW5   A0A212EWF6   A0A2A4JCM3   + More
H9JNP2   D2A5H3   A0A0T6B4H6   A0A1W4WEY8   A0A1Y1KDK3   A0A2J7PWE5   A0A1B6KNZ4   A0A0A9Y6F5   A0A067R9X4   A0A023F1D3   U4UGM9   E2AAE7   A0A0N7Z9J5   T1I7Q6   A0A1L8DC33   A0A1L8DC47   A0A0J7KNM9   A0A026VW31   A0A195C1G7   A0A0C9RQH4   A0A158NMQ7   A0A151IRS4   E2BHD6   A0A151X0D2   A0A195FWP0   A0A1B6CY29   A0A154P3K0   A0A310S6N5   F4WS06   A0A088AR66   A0A2A3E9F7   A0A0M9A2D3   U5EY11   A0A232EUH1   K7IYG9   A0A0L7REV3   A0A182F9X3   A0A2S2PKU6   A0A1J1HY01   A0A2M4BVQ5   A7UV35   A0A2M4BTI6   A0A1Q3F2U9   J9JQP4   A0A2S2RA96   A0A336MR83   A0A0K8TKM6   A0A2H8TNN5   B0X6W7   A0A182WZD4   A0A1S4H1R6   A0A182ICT3   A0A182QX89   A0A2M4CIF1   A0A182UNR2   A0A182MDK3   A0A182W4S4   A0A182YK68   A0A182TE14   A0A293MEV2   A0A182P7M7   A0A0P4VR83   A0A224XJK9   A0A087UXU3   B4IK77   A0A3B0K7U0   Q29H95   B4GY33   Q9VYT1   B4Q1I2   B3NT23   A0A2R5L5B0   E0W036   A0A1W4VHP4   B3N1E3   A0A1I8MNJ8   B4L2E2   A0A1I8NT93   B4M1I1   A0A1D2NG11   A0A1B0FGK1   A0A0M4EY91   W8ATL3   G3MPH3   A0A0L0CID4  

Pubmed

26354079    23622113    22118469    19121390    18362917    19820115    + More
28004739    25401762    24845553    25474469    23537049    20798317    27129103    24508170    30249741    21347285    21719571    28648823    20075255    12364791    26369729    25244985    17994087    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    20566863    25315136    27289101    24495485    22216098    26108605   

EMBL

ODYU01003975    SOQ43382.1    KQ460036    KPJ18432.1    KQ459593    KPI96401.1    + More
GAIX01006078    JAA86482.1    AGBW02012008    OWR45809.1    NWSH01002110    PCG69143.1    BABH01035171    KQ971345    EFA05075.1    LJIG01009888    KRT82180.1    GEZM01086409    JAV59474.1    NEVH01020933    PNF20654.1    GEBQ01026798    GEBQ01017060    JAT13179.1    JAT22917.1    GBHO01014977    GBRD01014307    JAG28627.1    JAG51519.1    KK852602    KDR20482.1    GBBI01003427    JAC15285.1    KB632314    ERL92182.1    GL438104    EFN69594.1    GDKW01000371    JAI56224.1    ACPB03005579    GFDF01010061    JAV04023.1    GFDF01010062    JAV04022.1    LBMM01004995    KMQ91927.1    KK107796    QOIP01000013    EZA47706.1    RLU15504.1    KQ978350    KYM94687.1    GBYB01010744    GBYB01010745    JAG80511.1    JAG80512.1    ADTU01002425    KQ981113    KYN09396.1    GL448287    EFN84905.1    KQ982617    KYQ53792.1    KQ981200    KYN45075.1    GEDC01018919    JAS18379.1    KQ434796    KZC05710.1    KQ767621    OAD53394.1    GL888294    EGI63029.1    KZ288313    PBC28350.1    KQ435791    KOX74409.1    GANO01000626    JAB59245.1    NNAY01002130    OXU22000.1    KQ414608    KOC69360.1    GGMR01017463    MBY30082.1    CVRI01000028    CRK92434.1    GGFJ01008025    MBW57166.1    AAAB01008980    EDO63412.1    GGFJ01007218    MBW56359.1    GFDL01013159    JAV21886.1    ABLF02032876    GGMS01017069    MBY86272.1    UFQT01001009    SSX28468.1    GDAI01002932    JAI14671.1    GFXV01003447    MBW15252.1    DS232427    EDS41638.1    APCN01005756    AXCN02002224    GGFL01000954    MBW65132.1    AXCM01005368    GFWV01013842    MAA38571.1    GDRN01104490    GDRN01104489    JAI57903.1    GFTR01003751    JAW12675.1    KK122189    KFM82182.1    CH480851    EDW51449.1    OUUW01000015    SPP88732.1    CH379064    EAL31863.1    CH479196    EDW27660.1    AE014298    AY095044    AAF48107.1    AAM11372.1    CM000162    EDX02471.1    CH954180    EDV45992.1    GGLE01000537    MBY04663.1    DS235855    EEB18992.1    CH902654    EDV33582.1    CH933810    EDW07803.1    CH940651    EDW65535.1    LJIJ01000053    ODN04162.1    CCAG010005975    CP012528    ALC48917.1    GAMC01017008    JAB89547.1    JO843774    AEO35391.1    JRES01000349    KNC32005.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000005204    UP000007266    + More
UP000192223    UP000235965    UP000027135    UP000030742    UP000000311    UP000015103    UP000036403    UP000053097    UP000279307    UP000078542    UP000005205    UP000078492    UP000008237    UP000075809    UP000078541    UP000076502    UP000007755    UP000005203    UP000242457    UP000053105    UP000215335    UP000002358    UP000053825    UP000069272    UP000183832    UP000007062    UP000007819    UP000002320    UP000076407    UP000075840    UP000075886    UP000075903    UP000075883    UP000075920    UP000076408    UP000075902    UP000075885    UP000054359    UP000001292    UP000268350    UP000001819    UP000008744    UP000000803    UP000002282    UP000008711    UP000009046    UP000192221    UP000007801    UP000095301    UP000009192    UP000095300    UP000008792    UP000094527    UP000092444    UP000092553    UP000037069   

PRIDE

H9JNP2   

Pfam

PF10158   LOH1CR12        + More
PF09791   Oxidored-like

Interpro

IPR018780   TBORCS5        + More
IPR019180   Oxidoreductase-like_N       
IPR023828   Peptidase_S8_Ser-AS       

ProteinModelPortal

A0A2H1VSE4   A0A0N1PIY1   A0A194PSI6   S4PWW5   A0A212EWF6   A0A2A4JCM3   + More
H9JNP2   D2A5H3   A0A0T6B4H6   A0A1W4WEY8   A0A1Y1KDK3   A0A2J7PWE5   A0A1B6KNZ4   A0A0A9Y6F5   A0A067R9X4   A0A023F1D3   U4UGM9   E2AAE7   A0A0N7Z9J5   T1I7Q6   A0A1L8DC33   A0A1L8DC47   A0A0J7KNM9   A0A026VW31   A0A195C1G7   A0A0C9RQH4   A0A158NMQ7   A0A151IRS4   E2BHD6   A0A151X0D2   A0A195FWP0   A0A1B6CY29   A0A154P3K0   A0A310S6N5   F4WS06   A0A088AR66   A0A2A3E9F7   A0A0M9A2D3   U5EY11   A0A232EUH1   K7IYG9   A0A0L7REV3   A0A182F9X3   A0A2S2PKU6   A0A1J1HY01   A0A2M4BVQ5   A7UV35   A0A2M4BTI6   A0A1Q3F2U9   J9JQP4   A0A2S2RA96   A0A336MR83   A0A0K8TKM6   A0A2H8TNN5   B0X6W7   A0A182WZD4   A0A1S4H1R6   A0A182ICT3   A0A182QX89   A0A2M4CIF1   A0A182UNR2   A0A182MDK3   A0A182W4S4   A0A182YK68   A0A182TE14   A0A293MEV2   A0A182P7M7   A0A0P4VR83   A0A224XJK9   A0A087UXU3   B4IK77   A0A3B0K7U0   Q29H95   B4GY33   Q9VYT1   B4Q1I2   B3NT23   A0A2R5L5B0   E0W036   A0A1W4VHP4   B3N1E3   A0A1I8MNJ8   B4L2E2   A0A1I8NT93   B4M1I1   A0A1D2NG11   A0A1B0FGK1   A0A0M4EY91   W8ATL3   G3MPH3   A0A0L0CID4  

KEGG

101743974    K20819 BLOC-1 related complex subunit 5 | (RefSeq) loss of heterozygosity 12 chromosomal region 1 pr

GO

GO:0032418  

PANTHER

PTHR31634  

Length:

260

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01046

outside

1  -  260

 

 

Pi

18.808088

Theta

19.862389

Tajima's D

-0.394415

CLR

1.48869

CSRT

0.269736513174341

Interpretation

Uncertain