SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14215  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011144
Annotation
PREDICTED:_peroxisomal_biogenesis_factor_19_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 3.096
 

Sequence

CDS
ATGTCTGACAATAAGAACGCATCCAAAAACGATCAAGATCCTGAATTAGACGATTTATTGAACAGTGCACTTCAGGATATGACAAAGAAGAAAGATGATAAGCCAAACGATACCACTCCTGATGGTGGCGAAGCAATGCAGAACATGTGGGGCGAGGAATTTATCAAAGAAGCAGCTGCTCAGTTTGAGAGCAACATGGCAGCTATCCTAGGCAGTTTCAGTGGAGTGCCAGAGGATCAGATAACACAAGAACAAATTGCATTAACTTTCAACAAAATGGCTGAAGCAGCATCACAGGTGTTAAAGCAAGGTGAATCGAGTGAAACAGAACCAAAGACAGATGACACGGCAGTACCGAAGGCAGATCAGGTCTCGGCAGCCATTTCGCAGACATTACAGAATTTGAACTCCAACTCTGAGAATCTTCAGACGCCTTTCTCAGAACAAGATCTAGCGAACATGTTTAATAATTTCAATTTAGGTGAAGGGGGCCAGGAAGGAAACATGTTCCTGCCCTTCATGCAGGGGATGATGCAGTCGCTCTTGTCGAAAGAAGTTTTATACCCATCTTTGAAGGAGCTAGTCGACAAATATCCAAGTTGGTTGAACGAGAACAAGACAAAGATTGAACAAAGCGAATACGAAAGATTCGAAAAACAGCAAACGTTAATGCAGCAAGTATGTGCTGAACTCGAGAACGAATTGGATAGTGACAGTGAAGAAGTTAAGAGAAAACGCTTCGAGAAAGTGTTGGAGTTGATGCAGAAGATGCAAGACCTAGGCCAGCCTCCCACTGAGCTGGTCGGGGATATAGGACCGGTACCTCAGAGCTTCGGTCCAGCGGCACAGGATCCATCACAATGTTGCATCAACTAG
Protein
MSDNKNASKNDQDPELDDLLNSALQDMTKKKDDKPNDTTPDGGEAMQNMWGEEFIKEAAAQFESNMAAILGSFSGVPEDQITQEQIALTFNKMAEAASQVLKQGESSETEPKTDDTAVPKADQVSAAISQTLQNLNSNSENLQTPFSEQDLANMFNNFNLGEGGQEGNMFLPFMQGMMQSLLSKEVLYPSLKELVDKYPSWLNENKTKIEQSEYERFEKQQTLMQQVCAELENELDSDSEEVKRKRFEKVLELMQKMQDLGQPPTELVGDIGPVPQSFGPAAQDPSQCCIN

Summary

EMBL
BABH01035155    BABH01035156    BABH01035157    RSAL01000044    RVE50677.1    NWSH01000230    + More
PCG78174.1    KZ150147    PZC72874.1    KQ459593    KPI96395.1    AGBW02010856    OWR47617.1    KQ460036    KPJ18437.1    ODYU01004532    SOQ44515.1    ODYU01009254    SOQ53539.1    KK853026    KDR12308.1    DQ440469    CH477322    ABF18502.1    EAT43591.1    JXUM01009874    GAPW01002949    KQ560294    JAC10649.1    KXJ83214.1    NEVH01006578    PNF37713.1    GGFK01006129    MBW39450.1    GGFK01006213    MBW39534.1    GGFM01002521    MBW23272.1    GGFM01002595    MBW23346.1    GGFK01006186    MBW39507.1    ADMH02001599    ETN61899.1    GGFJ01007738    MBW56879.1    GGFJ01007739    MBW56880.1    KQ971345    EFA05071.1    AXCM01000091    ATLV01013476    KE524860    KFB38038.1    EAT43592.1    AXCN02000729    APCN01000637    AAAB01008944    EAU76734.1    CVRI01000055    CRL01474.1    GFDL01010077    JAV24968.1    DS232030    EDS32553.1    GEZM01009822    GEZM01009821    JAV94292.1    AJVK01010182    GFDF01009920    JAV04164.1    AJWK01008028    GANO01002911    JAB56960.1    NNAY01001594    OXU23487.1    APGK01053536    KB741224    ENN72313.1    GDAI01000340    JAI17263.1    GFDL01009009    JAV26036.1    BT128225    KB631749    AEE63186.1    ERL85753.1    CH964182    KRF99251.1    GG666538    EEN57812.1    KZ288427    PBC25907.1    EDW80212.1    CM000157    EDW88155.1    CH480831    EDW45889.1    CM000361    CM002910    EDX04775.1    KMY89874.1    OUUW01000006    SPP81449.1    CH379059    EAL34214.1    CH902624    EDV33243.1    AY069294    AAL39439.1    DS235866    EEB19341.1    CH933807    EDW11282.1    AE014134    AAF53161.1    AAN10802.2    BT132857    AEV12232.1    EZ422641    ADD18917.1    JXJN01025274    CH916368    EDW04038.1    LBMM01019200    KMQ83594.1    GL437593    EFN70284.1    UFQT01001365    SSX30216.1    KA645530    AFP60159.1    JH818976    EKC26424.1    GDKW01000124    JAI56471.1    CH954177    EDV58826.1    ADTU01002487    CCAG010019860    GFDG01001956    JAV16843.1    KQ438551    KOX67202.1    CH940649    EDW64776.1    GDIP01225834    JAI97567.1   
Pfam
PF04614   Pex19        + More
PF13419   HAD_2
Interpro
IPR038322   Pex19_C_sf        + More
IPR006708   Pex19       
IPR023214   HAD_sf       
IPR036412   HAD-like_sf       
IPR041492   HAD_2       
IPR023198   PGP-like_dom2       
IPR006439   HAD-SF_hydro_IA       
SUPFAM
SSF56784   SSF56784       
PDB
5LNF     E-value=4.3269e-21,     Score=248

Ontologies

Topology

Length:
291
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00182
Exp number, first 60 AAs:
0.00013
Total prob of N-in:
0.16107
outside
1  -  291
 
 

Population Genetic Test Statistics

Pi
21.227783
Theta
26.395176
Tajima's D
-0.632867
CLR
0.509322
CSRT
0.212639368031598
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
28556443 MQGMMQSLLSK 100.00 0.002
28556443 MAEAASQVLK 100.00 0.002
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