Gene

KWMTBOMO14206

Pre Gene Modal

BGIBMGA009311

Annotation

PREDICTED:_uncharacterized_protein_LOC105842116_[Bombyx_mori]

Location

Bomo_Chr23(-):20500070-20501512      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.392

CDS

ATGGATTCGTTAAAACCACCGCCACCATTATGCCTCATGGGCGACTTGAAACAAAATTTTCAAAAATGGACACAGCAATATGATATTTATATGATTGCTAGCGGGACGGAAGGTGATGAAAAAATTAAAGATAAGCAGAAAAAGGCAATCTATTTGCACTGCCTAGGTGCAGAAGCACTAACCATATACAATGGTTTTAAGAACAAAGAAAAGTTATCTTATGTGGAAGTAAAACAGAAGTTTAATGAATATTGTTCGCCACCCGGAAATGAAACTTTTAGCAGACATGTCTTCTTCAGCAGAAAAAAGAGAGATGGAGAAAGTTTTGATGAATTTTTCTGTACGTTGAGAAAATTGGCGGGAGACTGTGGGTTTGCAGACCTAGAAGAAAGCTTAATAAGAGACCAAATCATATTAGGCTTAAATGATGCCAAATTAACAGAAAGATTGCTTAAGGAATCGACCTTAACATTGGATAGCTGCATGAAAATATGTAAAGTGGCTAAGAGTGCTGCAAAACAGGTTCAAGTCATGACAGAAAAGACAGTTGAAGCTGTTACAAGAAAACAAGAATCTCGAAGCAGAATGCCTAATCAGAATAAAACCAGTTTTAATAATAAACAACATCTAGGTAAGAGTGCAGAAGGATCAGTAAGGTTGAAGAATAATAATTGTGAAAGATGCGGAGGAGTGCATTCTCATCGATCCTGCCCAGCCTTTGGAAGGAGATGTGCTAAGTGTAATCGATATGGACATTACATGCAGATGTGCAGAACAGTTGGTGCTGTGTATGTCAGCGATGATGATAGTGATGACTCATTAGTAGTGGGGTCAGTAACTGTGGGCCAGGTTGATACAGAGGACTGGATCGTTGAGGCAAAAGTGAGAGGACAGAAGATGAAGTTCAAAGTGGATACAGGATCGCAGGTTAATATTTTGACTAGTGCTATAGTGAAAAAACTAGACTTAAAAATGACAGAAACTTGTACAAAATTAAAAAACTTTGATGGCTCAACTATAGAAACAGTAGGTATGACTAAAACTATAGTGAAATTCAATAAAAAAAAGTATGTACTTGACTTTTATGTGGTAAAATTTAAAACTACTAATGTGCTGAGCTATAAAGCTGCTGTGCAGTTGGGTTTAATAAACAAAGTTGAAAATATTTCAAAGGAATATGTAGTTCAGGACATTGGTGAATACAAAGATTTGTTTCATGGCTTAGGAAAATTGAACTATGTATACAAAATTAAATTAACAGACAATTGCTAA

Protein

MDSLKPPPPLCLMGDLKQNFQKWTQQYDIYMIASGTEGDEKIKDKQKKAIYLHCLGAEALTIYNGFKNKEKLSYVEVKQKFNEYCSPPGNETFSRHVFFSRKKRDGESFDEFFCTLRKLAGDCGFADLEESLIRDQIILGLNDAKLTERLLKESTLTLDSCMKICKVAKSAAKQVQVMTEKTVEAVTRKQESRSRMPNQNKTSFNNKQHLGKSAEGSVRLKNNNCERCGGVHSHRSCPAFGRRCAKCNRYGHYMQMCRTVGAVYVSDDDSDDSLVVGSVTVGQVDTEDWIVEAKVRGQKMKFKVDTGSQVNILTSAIVKKLDLKMTETCTKLKNFDGSTIETVGMTKTIVKFNKKKYVLDFYVVKFKTTNVLSYKAAVQLGLINKVENISKEYVVQDIGEYKDLFHGLGKLNYVYKIKLTDNC

Uniprot

A0A087U9K1   A0A2G8KKG5   A0A1Y1KPK9   A0A3P8Q6C6   A0A3P9HT22   A0A3B3I1S4   + More
A0A3B3C9X5   A0A3P8S414   A0A1A8UGA0   A0A1A8D4P4   A0A3P8RHF8   A0A3B1JKR1   A0A3P8RKT7   X1WTY2   A0A3P9M8I3   I3KX76   I3KYE2   A0A146TAZ6   A0A3P9AYU2   A0A2S2N8I3   A0A1A8IVJ0   A0A3P8QAD1   A0A3P8PD24   A0A3B3HLX7   A0A2G8LMB1   A0A3P9HXP1   L7LWW6   A0A2G8L9H5   A0A146SN99   A0A1Y1MUX5   A0A1Y1LNL5   A0A0A9WVK6   A0A1Y1LVD1   A0A212FHD4   A0A3Q0J4U3   A0A2G8KBJ0   A0A2G8KFU3   A0A1E1XPH1   J9LDY4   A0A2S2NI46   A0A1Y1JV53   A0A147BKR8   J9LYD2   A0A1Y1K454   A0A1Y1M671   A0A2G8KHQ8   J9M4C2   A0A1Y1NHV7   A0A0P4VZQ4   J9M6I9   A0A0A9WHB1   A0A147BBY0   J9LNB8   A0A0A9Z4Y4   A0A2G8KB94   A0A087UXZ8   A0A224Z9B6   A0A146LC45   A0A3Q2XZ76   A0A1Y1MZH6   A0A1B8XWD8   A0A1Y1L7V1   J9KCS2   A0A1S3DM59   A0A2S2PCF5   A0A1Y1LR12   X1XQZ7   A0A0A9XW98   A0A023EXW7   A0A1Y1LZ99   A0A1A8JBP0   A0A023EWW4   A0A1S3JEC7   A0A075EIL5   A0A147BIX9   J9L288   A0A1Y1NN34   A0A293LIZ7   J9JQ26   A0A3S3NA82   A0A131Y4S4   A0A2G8JJY8   A0A2I4C5Y1   A0A3S2N4F0   A0A2B4S589   A0A0A9YK20   A0A1S3ICH8   A0A069DZS8   J9L8Q1   A0A3P9CYY5  

Pubmed

29023486    28004739    17554307    29451363    25329095    25186727    + More
25576852    25401762    22118469    29209593    29652888    27129103    28797301    26823975    20431018    25474469    25201971    26334808   

EMBL

KK118858    KFM74040.1    MRZV01000519    PIK48493.1    GEZM01079607    GEZM01079598    + More
JAV62391.1    HADY01023773    HAEJ01006887    SBS47344.1    HADZ01022257    SBP86198.1    ABLF02013930    ABLF02013934    AERX01076149    AERX01070080    GCES01096219    JAQ90103.1    GGMR01000868    MBY13487.1    HAED01014930    SBR01375.1    MRZV01000033    PIK61397.1    GACK01009641    JAA55393.1    MRZV01000161    PIK56894.1    GCES01104253    JAQ82069.1    GEZM01020000    JAV89472.1    GEZM01050997    GEZM01050995    JAV75219.1    GBHO01031825    JAG11779.1    GEZM01051395    JAV74977.1    AGBW02008504    OWR53150.1    MRZV01000718    PIK45343.1    MRZV01000618    PIK46835.1    GFAA01002468    JAU00967.1    ABLF02010707    GGMR01004179    MBY16798.1    GEZM01102055    GEZM01102054    GEZM01102053    GEZM01102051    JAV52011.1    GEGO01004362    JAR91042.1    ABLF02041541    GEZM01097791    JAV54106.1    GEZM01041944    JAV80090.1    MRZV01000576    PIK47528.1    ABLF02038957    GEZM01001973    JAV97431.1    GDKW01000526    JAI56069.1    ABLF02007384    GBHO01036465    JAG07139.1    GEGO01007539    JAR87865.1    ABLF02008456    GBHO01004090    JAG39514.1    MRZV01000723    PIK45255.1    KK122208    KFM82237.1    GFPF01012437    MAA23583.1    GDHC01013957    JAQ04672.1    GEZM01016880    JAV91071.1    KV461054    OCA14957.1    GEZM01066276    JAV68015.1    ABLF02011977    GGMR01014455    MBY27074.1    GEZM01050758    JAV75411.1    ABLF02041865    GBHO01022049    GBHO01022048    JAG21555.1    JAG21556.1    GBBI01004851    JAC13861.1    GEZM01043682    JAV78912.1    HAED01020456    SBR07020.1    GBBI01004852    JAC13860.1    KF319019    AIE48224.1    GEGO01004665    JAR90739.1    ABLF02022355    ABLF02022359    ABLF02022361    ABLF02022365    ABLF02041467    GEZM01001974    JAV97427.1    GFWV01003962    MAA28692.1    ABLF02019772    NCKU01019406    RWR98729.1    GEFM01002416    JAP73380.1    MRZV01001756    PIK36039.1    CM012440    RVE73710.1    LSMT01000199    PFX23692.1    GBHO01013729    JAG29875.1    GBGD01000115    JAC88774.1    ABLF02026678    ABLF02026682   

Proteomes

UP000054359    UP000230750    UP000265100    UP000265200    UP000001038    UP000261560    + More
UP000265080    UP000018467    UP000007819    UP000265180    UP000005207    UP000265160    UP000007151    UP000079169    UP000264820    UP000008143    UP000085678    UP000285301    UP000192220    UP000225706   

Pfam

PF00078   RVT_1        + More
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00665   rve
PF03732   Retrotrans_gag
PF17917   RT_RNaseH

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001995   Peptidase_A2_cat       
IPR005162   Retrotrans_gag_dom       
IPR001969   Aspartic_peptidase_AS       
IPR038081   CalX-like_sf       
IPR036875   Znf_CCHC_sf       
IPR041373   RT_RNaseH       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF141072   SSF141072       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10     2.60.40.2030    

ProteinModelPortal

A0A087U9K1   A0A2G8KKG5   A0A1Y1KPK9   A0A3P8Q6C6   A0A3P9HT22   A0A3B3I1S4   + More
A0A3B3C9X5   A0A3P8S414   A0A1A8UGA0   A0A1A8D4P4   A0A3P8RHF8   A0A3B1JKR1   A0A3P8RKT7   X1WTY2   A0A3P9M8I3   I3KX76   I3KYE2   A0A146TAZ6   A0A3P9AYU2   A0A2S2N8I3   A0A1A8IVJ0   A0A3P8QAD1   A0A3P8PD24   A0A3B3HLX7   A0A2G8LMB1   A0A3P9HXP1   L7LWW6   A0A2G8L9H5   A0A146SN99   A0A1Y1MUX5   A0A1Y1LNL5   A0A0A9WVK6   A0A1Y1LVD1   A0A212FHD4   A0A3Q0J4U3   A0A2G8KBJ0   A0A2G8KFU3   A0A1E1XPH1   J9LDY4   A0A2S2NI46   A0A1Y1JV53   A0A147BKR8   J9LYD2   A0A1Y1K454   A0A1Y1M671   A0A2G8KHQ8   J9M4C2   A0A1Y1NHV7   A0A0P4VZQ4   J9M6I9   A0A0A9WHB1   A0A147BBY0   J9LNB8   A0A0A9Z4Y4   A0A2G8KB94   A0A087UXZ8   A0A224Z9B6   A0A146LC45   A0A3Q2XZ76   A0A1Y1MZH6   A0A1B8XWD8   A0A1Y1L7V1   J9KCS2   A0A1S3DM59   A0A2S2PCF5   A0A1Y1LR12   X1XQZ7   A0A0A9XW98   A0A023EXW7   A0A1Y1LZ99   A0A1A8JBP0   A0A023EWW4   A0A1S3JEC7   A0A075EIL5   A0A147BIX9   J9L288   A0A1Y1NN34   A0A293LIZ7   J9JQ26   A0A3S3NA82   A0A131Y4S4   A0A2G8JJY8   A0A2I4C5Y1   A0A3S2N4F0   A0A2B4S589   A0A0A9YK20   A0A1S3ICH8   A0A069DZS8   J9L8Q1   A0A3P9CYY5  

KEGG

105842116    no KO assigned | (RefSeq) uncharacterized LOC105842116

GO

GO:0004190   GO:0003676   GO:0015074   GO:0008270  

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02207

Exp number, first 60 AAs:

0.0129

Total prob of N-in:

0.00111

outside

1  -  423

 

 

Pi

3.375172

Theta

8.309396

Tajima's D

-1.753761

CLR

39.690405

CSRT

0.0283485825708715

Interpretation

Uncertain