Gene

KWMTBOMO14204

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):20402403-20403564      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.417

CDS

ATGAAAGCAAGAGTACGGACAGAAAAGCTAGGAGAACACTTTCACATCAAAAAAGGAGTTAGACAGGGATACCCCCTTTCACCCAAACTTTTCTCTGCAACCCTAGAACATGTGCTTCGTCAGCTCGAATGGGACGATTACGGTATTAATATTAATGGAGTGTTACTAAATCATCTGAGATTTGCCGACGACCTCATACTTATAAGCGAAAATCCAGAAACTTTACAAAAAATGATTGAGCAACTTGTATGTGAAAGTGAAAAAGTTGGACTATCATTGAACACAAACAAAACAAAGCTGATGACAAACTACAAAAAAGTCCCTATCAAACCTTACAACACAGCTAAATTAGAATATGTAAATGAGTATACATACCTCGGCCAAATCATATCCCCCAAAGACCTCACAGCAAAAGAAATCAGTAACAGAATAAATATAGGATGGAAAAGTTACTGGGCATTAAAAGATGTCATGAAGAATTCAGAAATACCTGTTAAGGCAAAGAAGAAAATATTTAATACATGCATTCTTCCAAGTATGACCTATGGATGCCAAACATGGGGATTGACAAATAAGAACATAAAATCTTTAGAAATTTGTCAACACCGAATGGAAAGAAGTATGTTAAACATGACATTAAAAGATAAAATACGGTTAACAAAAATAAGAAAACAAACAAAGATCATAGATATAAAATACCGAATACAACAACTGAAATGGAAATGGGCTGGACATTTAATTCGAGATAAAACAGAAAAATGGGCTAAAGGAGTGACAGAATGGTGTCCTAGATATAAAAAGCGAAATAGAGGAAGACAACAACGTAGATGGGAAGATGACATCAAAAAAGCGGCAGGAACGACTTGGATGAGAAAAACGCAGGATAGATTATTATGGAGAACCCTTGGGGAGGCCTATGCTGTACAGCAAGACGATCAAGAAACCGGTGTCGAATAA

Protein

MKARVRTEKLGEHFHIKKGVRQGYPLSPKLFSATLEHVLRQLEWDDYGININGVLLNHLRFADDLILISENPETLQKMIEQLVCESEKVGLSLNTNKTKLMTNYKKVPIKPYNTAKLEYVNEYTYLGQIISPKDLTAKEISNRINIGWKSYWALKDVMKNSEIPVKAKKKIFNTCILPSMTYGCQTWGLTNKNIKSLEICQHRMERSMLNMTLKDKIRLTKIRKQTKIIDIKYRIQQLKWKWAGHLIRDKTEKWAKGVTEWCPRYKKRNRGRQQRRWEDDIKKAAGTTWMRKTQDRLLWRTLGEAYAVQQDDQETGVE

Uniprot

D7F176   A0A2W1BCS2   D7F179   A0A2W1BSQ8   A0A2W1BDX2   A0A2H1VY30   + More
D7F157   A0A2W1B5F8   A4KWF4   A0A224XSN7   A0A023EXV2   A4KWF2   A4KWG0   D7F166   A0A3S2TAR4   D7F165   D7F164   D7F160   A0A069DZM5   D7F178   D7F158   D7F159   A0A3S2TRE0   W4YXJ1   A0A2A4J025   D7F177   A0A2W1BMB6   A0A2H1WF27   A0A2H1VS24   A0A2W1BLC9   A0A2W1BZV1   A0A0R3Q573   A0A2G8JFM9   A0A3S2KX72   A0A2G8K4F2   A0A1E1X2U1   A0A2G8KES6   A0A023EWU8   A0A0P4VWD0   A0A016UTS3   A0A016UWI5   A0A069DX96   A0A016S1D2   A0A016U3R5   A0A016W591   W4YXJ0   A0A016TIA8   A0A016UR05   A0A016WC44   A0A016WKV3   A0A016S949   A0A016TUG1   A0A016WEQ1   A0A016UJL8   A0A016WA79   A0A016S795   A0A016WMQ0   A0A016T7J7   A0A016VVN3   A0A016WD35   A0A016S5B2   A0A016WES8   A0A016WCG1   A0A016TH80   A0A016WD08   A0A016VMK8   A0A016USZ5   A0A016VDZ6   A0A2G5UC19   A0A016TQ81   A0A016VN75   A0A2W5STX5   A0A016VGM4   A0A016UUF2   A0A016VBB9   A0A016VTY8   A0A016V6V0   A0A016URH5   A0A016SSP6   A0A016US53   A0A016VEC1   A0A2G5SZV9   A0A016VW83   A0A016VCD9   A0A016UGM6   A0A016TXK2   A0A016VCU3   A0A016S5A1   A0A016WJL5   A0A016WVQ3   A0A016UEM0   A0A016VBP7   A0A016T636   A0A016T4C4   A0A016UMK7   A0A016T5Z1   A0A016VT25   A0A016WYN9   A0A016W1X2  

Pubmed

20470440    28756777    17360547    25474469    26334808    29023486    + More
28503490    27129103    25730766   

EMBL

FJ265561    ADI61829.1    KZ150485    PZC70710.1    FJ265564    ADI61832.1    + More
KZ149912    PZC78089.1    KZ150108    PZC73382.1    ODYU01004982    SOQ45402.1    FJ265542    ADI61810.1    KZ150317    PZC71439.1    EF113399    EF113400    ABO45233.1    GFTR01005437    JAW10989.1    GBBI01004876    JAC13836.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    FJ265551    ADI61819.1    RSAL01002362    RVE40503.1    FJ265550    ADI61818.1    FJ265549    ADI61817.1    FJ265545    ADI61813.1    GBGD01000380    JAC88509.1    FJ265563    ADI61831.1    FJ265543    ADI61811.1    FJ265544    ADI61812.1    RSAL01000016    RVE53061.1    AAGJ04144474    NWSH01004509    PCG65028.1    FJ265562    ADI61830.1    KZ150072    PZC74016.1    ODYU01008249    SOQ51673.1    ODYU01004088    SOQ43598.1    KZ149985    PZC75698.1    KZ149907    PZC78256.1    UZAG01000503    VDO08661.1    MRZV01002136    PIK34564.1    RSAL01002130    RVE40575.1    MRZV01000899    PIK42833.1    GFAC01005640    JAT93548.1    MRZV01000640    PIK46507.1    GBBI01004877    JAC13835.1    GDKW01001596    JAI54999.1    JARK01001362    EYC18844.1    EYC18843.1    GBGD01000453    JAC88436.1    JARK01001655    EYB84321.1    JARK01001396    EYC09581.1    JARK01000807    EYC34984.1    AAGJ04050748    JARK01001434    EYC02684.1    JARK01001367    EYC17351.1    JARK01000449    EYC36872.1    JARK01000224    EYC40226.1    JARK01001608    EYB86877.1    JARK01001414    JARK01001412    EYC06128.1    EYC06440.1    JARK01000347    EYC38051.1    JARK01001372    EYC15539.1    JARK01000460    EYC36749.1    JARK01001621    EYB86109.1    JARK01000189    EYC40935.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001340    EYC30828.1    JARK01000384    EYC37506.1    JARK01001626    EYB85833.1    EYC37503.1    EYC37504.1    JARK01001438    EYC02012.1    EYC37505.1    JARK01001343    EYC28635.1    JARK01001364    EYC18031.1    JARK01001348    EYC25257.1    PDUG01000004    PIC36796.1    JARK01001423    EYC04578.1    JARK01001344    EYC28218.1    QFQM01000478    PZR02946.1    JARK01001346    EYC26784.1    JARK01001361    EYC19034.1    JARK01001349    EYC24735.1    JARK01001341    EYC30223.1    JARK01001351    EYC23394.1    JARK01001365    EYC18009.1    JARK01001517    EYB93530.1    EYC18010.1    EYC25048.1    PDUG01000006    PIC20518.1    EYC31302.1    EYC25050.1    JARK01001378    EYC13977.1    JARK01001406    EYC07496.1    EYC25046.1    JARK01001630    EYB85641.1    JARK01000256    EYC39462.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    EYC25049.1    JARK01001470    JARK01000204    EYB98081.1    EYC40601.1    JARK01001475    EYB97550.1    JARK01001370    EYC16151.1    EYB98082.1    EYC40602.1    EYC30744.1    JARK01000063    EYC44387.1    EYC33297.1   

Proteomes

UP000283053    UP000007110    UP000218220    UP000050602    UP000230750    UP000024635    + More
UP000230233    UP000249060   

PRIDE

D7F176    D7F179    D7F157    D7F166    D7F165    D7F164    + More
D7F160    D7F178    D7F158    D7F159    D7F177   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF13855   LRR_8
PF01826   TIL

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR029052   Metallo-depent_PP-like       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.80.10.10     3.60.21.10    

ProteinModelPortal

D7F176   A0A2W1BCS2   D7F179   A0A2W1BSQ8   A0A2W1BDX2   A0A2H1VY30   + More
D7F157   A0A2W1B5F8   A4KWF4   A0A224XSN7   A0A023EXV2   A4KWF2   A4KWG0   D7F166   A0A3S2TAR4   D7F165   D7F164   D7F160   A0A069DZM5   D7F178   D7F158   D7F159   A0A3S2TRE0   W4YXJ1   A0A2A4J025   D7F177   A0A2W1BMB6   A0A2H1WF27   A0A2H1VS24   A0A2W1BLC9   A0A2W1BZV1   A0A0R3Q573   A0A2G8JFM9   A0A3S2KX72   A0A2G8K4F2   A0A1E1X2U1   A0A2G8KES6   A0A023EWU8   A0A0P4VWD0   A0A016UTS3   A0A016UWI5   A0A069DX96   A0A016S1D2   A0A016U3R5   A0A016W591   W4YXJ0   A0A016TIA8   A0A016UR05   A0A016WC44   A0A016WKV3   A0A016S949   A0A016TUG1   A0A016WEQ1   A0A016UJL8   A0A016WA79   A0A016S795   A0A016WMQ0   A0A016T7J7   A0A016VVN3   A0A016WD35   A0A016S5B2   A0A016WES8   A0A016WCG1   A0A016TH80   A0A016WD08   A0A016VMK8   A0A016USZ5   A0A016VDZ6   A0A2G5UC19   A0A016TQ81   A0A016VN75   A0A2W5STX5   A0A016VGM4   A0A016UUF2   A0A016VBB9   A0A016VTY8   A0A016V6V0   A0A016URH5   A0A016SSP6   A0A016US53   A0A016VEC1   A0A2G5SZV9   A0A016VW83   A0A016VCD9   A0A016UGM6   A0A016TXK2   A0A016VCU3   A0A016S5A1   A0A016WJL5   A0A016WVQ3   A0A016UEM0   A0A016VBP7   A0A016T636   A0A016T4C4   A0A016UMK7   A0A016T5Z1   A0A016VT25   A0A016WYN9   A0A016W1X2  

KEGG

101740490    no KO assigned | (RefSeq) CDK5 regulatory subunit-associated protein 1

GO

GO:0003964   GO:0004519  

Length:

318

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03687

Exp number, first 60 AAs:

0.00073

Total prob of N-in:

0.10424

outside

1  -  318

 

 

Pi

1.545463

Theta

3.232162

Tajima's D

-1.327292

CLR

0

CSRT

0.0745462726863657

Interpretation

Uncertain