Silkworm Genome Informatics Database

Gene

KWMTBOMO14198

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]

Location

Bomo_Chr23(-):20291696-20294141 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.187

CDS

ATGCGTCATGATAATCGCCTTATCGTTGCCTCCGCTGACTACTCTCCGAATCCTGATCACGCAGGAGCCAGTCACCGTCGACGTCCTAGACACATTCTTACGGATCCATCAGATCCAATAACCTTTGCATTAGACGCCTTCAGCTCTAACACTAGGAGCAGGCTTAGGGACCCCGCAGATTACGACAACGTCATCAGAGATTTAATAAACGTCGACTGGGACACCGAACTGGAAGTTTGTCCGTCTGTCGATGATATGCTTTTGGTATTCTATAAACATATTCGCATGGTTATCGAGAAACGTGTGCCGAAGCGTTCACCAAGAAGCAAGAAGTACCCTCCGTGGTTTTCTTGCGACTTAATTAAACTTCTTAAGGAAAAACTGAAATATAGGAACAAGCTTAAGAAATTCAATAAAAACCCTTTGGATAAATTATCTTTCGAGTTGGCCAAAAAGCGAGCCCAACACCTTATGGTTACATGCTACAAAGACTACATTGCTCGTCTCGAATCAAGCTTACGATACAACCCCAAATTGTTTTGGTCTTTTATCAAGAACAAAAGAAGGAACGGTAGCCTCTTCCCTGCACGGATGACTCTGGAGGACAAGAGTGCCTCGAACGGCAATGATATTTGCAATCTCTTTGCCCATAGCTTCTCTTCTGTATACAATAGTAGTTTTTTACCCTCCTCGGCCCCTCACGTTGCAAAATTATTAAATAATTACTTGTCGGTTATCAAATTTGATGACGCACATGTACTTAAAGCTTTAAAAAAACTTGTTCTGAATAAGGGAGCTGGTTCGGATGGCCTTCCTGCAATATTTGTTTCTAGATGCGCTACAGTACTTGCTCACCCGTTGCGTCGTATATACAACAAATCGTTAATAACCGGTGTTTTCCCAAGCAATTGGAAGCTGGCGTTGATTGTTCCTTTGCATAAGGACGGCCCGAAGGATCTTATCAGGAACTACCGACCTATTTCAATTCTTGCTGTATTTGCCAAGATTTTTGAGCAACTTCTCCGCCCGATTTTGGCTTGGCATTTCAAAAATCTAATCAGCCCTCATCAACATGTCTTCACGAAGTCTAGATCTACGTCAACAAACTTGACATCTTTCATTAACGAAATTGCTGTTGAGGTCGACAGGCGCTCGGCTGTTGATGCTGTGTACACCGATTTTAGCAAAGCGTTTGATCGCGTGAATCACAGAATCCTTTTGCAGAAGCTCTCTGATAATGGCATCGCTGAGCCATTGATGAGCTGGTGTTCATCGTATCTCTCGGCTCGGCAATCAATGGTCGTAGCGTCGGGTTTTTTTTTCTGA

Protein

MRHDNRLIVASADYSPNPDHAGASHRRRPRHILTDPSDPITFALDAFSSNTRSRLRDPADYDNVIRDLINVDWDTELEVCPSVDDMLLVFYKHIRMVIEKRVPKRSPRSKKYPPWFSCDLIKLLKEKLKYRNKLKKFNKNPLDKLSFELAKKRAQHLMVTCYKDYIARLESSLRYNPKLFWSFIKNKRRNGSLFPARMTLEDKSASNGNDICNLFAHSFSSVYNSSFLPSSAPHVAKLLNNYLSVIKFDDAHVLKALKKLVLNKGAGSDGLPAIFVSRCATVLAHPLRRIYNKSLITGVFPSNWKLALIVPLHKDGPKDLIRNYRPISILAVFAKIFEQLLRPILAWHFKNLISPHQHVFTKSRSTSTNLTSFINEIAVEVDRRSAVDAVYTDFSKAFDRVNHRILLQKLSDNGIAEPLMSWCSSYLSARQSMVVASGFFF

Uniprot

A0A2A4JDA2 A0A2A4JB85 A0A1Y1MCK3 G3E4N4 A0A2S2PUU1 D7GXL0 + More
D7GXK5 D7GXK7 D7GXK8 J9LYR7 D7GXK9 D7GXK2 A0A1S4ESK7 A0A1Y1JXM0 A0A2S2PIQ8 A0A023EYZ1 A0A2S2P1K1 D7ELD1 X1WNS3 A0A131XUY4 A0A1B6EJM5

Pubmed

28004739 21815956 18362917 19820115 25474469

EMBL

NWSH01001974 PCG69524.1 NWSH01002032 PCG69367.1 GEZM01038580 JAV81606.1 + More
HQ585015 AEM44817.1 GGMS01000095 MBY69298.1 GG694238 EFA13484.1 GG694237 EFA13480.1 EFA13487.1 EFA13486.1 ABLF02012895 EFA13485.1 EFA13482.1 GEZM01097911 JAV54049.1 GGMR01016676 MBY29295.1 GBBI01004290 JAC14422.1 GGMR01010742 MBY23361.1 DS497832 EFA11994.1 ABLF02012698 ABLF02024472 ABLF02043104 GEFM01006330 JAP69466.1 GECZ01031653 JAS38116.1

Proteomes

UP000218220 UP000007266 UP000007819 UP000079169

Pfam

PF00078 RVT_1

Interpro

IPR000477 RT_dom + More
IPR036691 Endo/exonu/phosph_ase_sf

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

A0A2A4JDA2 A0A2A4JB85 A0A1Y1MCK3 G3E4N4 A0A2S2PUU1 D7GXL0 + More
D7GXK5 D7GXK7 D7GXK8 J9LYR7 D7GXK9 D7GXK2 A0A1S4ESK7 A0A1Y1JXM0 A0A2S2PIQ8 A0A023EYZ1 A0A2S2P1K1 D7ELD1 X1WNS3 A0A131XUY4 A0A1B6EJM5

KEGG

105842344 no KO assigned | (RefSeq) uncharacterized LOC105842344

GO

GO:0003964

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03716

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01216

outside

1 - 441

Pi

3.207475

Theta

12.626187

Tajima's D

-1.956469

CLR

0.686879

CSRT

0.0154492275386231

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics