Gene

KWMTBOMO14185  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011133

Annotation

PREDICTED:_protein_suppressor_of_forked_[Papilio_xuthus]

Location

Bomo_Chr23(+):20013142-20034309      View in EpiBrowser

Full name

Protein suppressor of forked      

Location in the cell

Cytoplasmic   Reliability : 2.237

CDS

ATGGCATCTGTAGATGAAATCGCCGACATTGATTGGGGTAATGAACGCCTATCCCGCGCCCAGCGTGCAGTCGAAGCCAACATATACGATGTGGACTCTTGGTCATTGCTAGTAAGAGAAGCCCAGGCCCGAAACATCAACGATGTCCGAACCATGTACGAGAAGTTGATAACGGCATTCCCGACCACAGGACGTTACTGGAAAATATATATCGAACAGGAGATGAAAGCGAGAAATTTTGAAAGAGTCGAAAAGCTCTTCCAGAGGTGTCTGATGAAGATATTAAACATCGAACTCTGGAGGCTGTACCTGAACTACGTGAAGGAGACGAAGTGCATGCTACCCACTTACAAGGAGAAAATGGCGCAGGCCTACGACTTCGCCCTGGACAAGATAGGTCTGGACATCCACGCTTACCCAATATGGAACGACTACGTGACGTTTCTGAAGAGTGTCGAAGCCGTTGGTTCATACGCCGAGAACCAGAAGATATCCGCCGTTCGAAAGATCTATCAGAGAGCGGTCATAACGCCCATAATAGGCATAGAGACGCTGTGGAAAGACTATATAGCCTTCGAGCAAAGCATCAACCCGATAATCGCCGAAAGGATGGCCATGGAGCGTTCCCGGGAGTACATGAACGCGAGACGAGTCTCCAAGGAGCTGGAGACGGTCACCCGGGGACTCAATAGGAACATGCCCGCGACGCCGCCCACCGTCGACCGCGAGGAGATGAAACAGGTGGAGTTATGGAAGAAGTACATATCGTGGGAGCGCGCGAACCCCCTCCGCTCCGAGGACACGGCGCTGGTGGCGCGGCGCGTGATGTTCGCCATCGAGCAGTGCCTGCTGTGTCTGGCGCACCACCCGGACGTGTGGCACCAGGCCGCGCAGTTCCTCGACCACTCCTCCAAGCTGCTGCAGGAGAAGGGGGACTCGAACGCGTCCCGGCTGTTCTCTGACGAGGCGGCGGCGGTGTACGAGCGCGCCACCAGCGGCCCCCTCAAACACTCCACGCTGCTGCACTTCGCACACGCAGACTACGAGGAGAGCAGGCTGCACTACCACAAGGTGCACCAGGTCTACACGCGCTACCTGGACACAGAGGACATCGACCCCACGTTGGCCTATGTACAGTACATGAAGTTCGCCAGGAGGGCGGAGGGAATCAAGTCTGCGAGGACCGTCTTCAAGAGGGCCCGGGAGGATCAGAGGTCCCGGTACCACGTGTTCGTGGCCGCCGCGCTCATGGAGTACTACTGCTCCAAGGACAAGAACATAGCCTTCAGGATCTTCGAGCTCGGCCTCAAGAAGTTCTCCCACATCCCGGAGTACGTGCTCTGCTACATCGACTACCTGTCCCATCTCAACGAGGATAACAACACGAGGGTTCTGTTCGAGCGGGTGCTGTCCTCGGGCAGCCTGAGGCCGGAGCACTCAGTCGACATATGGAACAGATTCCTGGAGTTCGAGTCCAACATCGGGGACCTGGTCAGCATTGTCAAAGTCGAGAAGCGGCGGCAGGGCGTGCTCGAGAAGATAAAAGAATTCGAAGGCAAAGAGACGGCCCAGCTGGTGGACAGATACAAGTTCCTCGACCTGTACCCGTGCAGCATCGCCGAGCTGAAGTCTATAGGGTACACTGAGGTGGCCTCCATGTCGAACAAGTCGTGGGCCCTCGGGGGGCCGCTGGCGGGGATCTCGCCGGAGCTGGCGGCCGTCATCCTGGGGCAGAGAGACAACGATCCTAACAAAGACATTGCGCGTCCGGACACCAACCAAATGATTCCGTACAAACCTAAGTCGAACCCACTACCCGGGGAGCACCCCATACCAGGTGGGGCGTTTCCGCTGCCGTCGAGCGCGGCGCACGTGTGCACGCTGCTGCCGCCGCCCAACTGCTTCCGGGGACCCTTCGTGGCGGTGGACCGGCTCATGCAGCTCTTCAACAGGATATCGCTCCCGGATAAAGTGCCGGCGCCCTCCGCGGAGAACGGCTGCGACACGCGGCTGTTCGAGATGGCGCGCTCCGTGCACTGGCTGTTCGACGACGACGGCGTCACCGCCATCTCCAATAAGGTCCGGCGCAGGAAGCTGGGCGACGACTCTGACGACGACGAGCTGGGCACGGCGCCCCCGGTCAACGACATATACAGGCAGCGGCAGCAGAAGCGCGTCAAGTAG

Protein

MASVDEIADIDWGNERLSRAQRAVEANIYDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKLFQRCLMKILNIELWRLYLNYVKETKCMLPTYKEKMAQAYDFALDKIGLDIHAYPIWNDYVTFLKSVEAVGSYAENQKISAVRKIYQRAVITPIIGIETLWKDYIAFEQSINPIIAERMAMERSREYMNARRVSKELETVTRGLNRNMPATPPTVDREEMKQVELWKKYISWERANPLRSEDTALVARRVMFAIEQCLLCLAHHPDVWHQAAQFLDHSSKLLQEKGDSNASRLFSDEAAAVYERATSGPLKHSTLLHFAHADYEESRLHYHKVHQVYTRYLDTEDIDPTLAYVQYMKFARRAEGIKSARTVFKRAREDQRSRYHVFVAAALMEYYCSKDKNIAFRIFELGLKKFSHIPEYVLCYIDYLSHLNEDNNTRVLFERVLSSGSLRPEHSVDIWNRFLEFESNIGDLVSIVKVEKRRQGVLEKIKEFEGKETAQLVDRYKFLDLYPCSIAELKSIGYTEVASMSNKSWALGGPLAGISPELAAVILGQRDNDPNKDIARPDTNQMIPYKPKSNPLPGEHPIPGGAFPLPSSAAHVCTLLPPPNCFRGPFVAVDRLMQLFNRISLPDKVPAPSAENGCDTRLFEMARSVHWLFDDDGVTAISNKVRRRKLGDDSDDDELGTAPPVNDIYRQRQQKRVK

Description

Essential protein, may play a role in mRNA production or stability.

Subunit

Probably interacts with an RNA-binding protein.

Similarity

Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.

Keywords

Alternative splicing   Complete proteome   Nucleus   Phosphoprotein   Reference proteome   Repeat  

Feature

chain  Protein suppressor of forked
splice variant  In isoform E.

Uniprot

H9JNM9   A0A2A4IZY6   A0A194PSH1   A0A2W1BC53   A0A212FJS9   A0A2H1WFW9   + More
A0A194RMW6   A0A154PG94   A0A0C9S0B0   A0A0M8ZTK3   A0A310S893   A0A088AKK0   A0A0L7R9J2   E2AWC7   A0A067R195   A0A232ENU7   A0A026X3Y1   A0A3L8DG90   A0A195AZG7   A0A195EE00   F4X1W4   E2BXK4   A0A195D4K0   A0A1B6CGC0   T1HT88   A0A1W4X9X1   A0A023F598   A0A2A3EH94   A0A0J7KXU5   A0A1B6KX04   A0A195FYA3   D2A3P0   A0A0A9YM07   N6SVB2   A0A1B6K0U8   A0A1B6ENK3   A0A182Y4B2   A0A182JTF5   A0A182P5T0   A0A182IRV9   A0A182RNQ7   A0A182QHX7   A0A1B0DCA6   A0A1B6J9Z5   A0A084VRC4   A0A2M4AMV5   A0A182F7E1   A0A1B0CCL9   A0A2M4BF68   A0A151X8E4   A0A182MUI8   A0A1B6GER8   W5JIY1   A0A182VE99   A0A182WRJ2   Q7QDA0   A0A182HU85   A0A182TDN5   A0A182N635   A0A1S4FBE7   A0A0K8VUG6   A0A034VYT8   A0A1L8DGX8   A0A1I8M8R5   Q0IFE2   A0A1A9W3Z9   A0A1J1HRE8   A0A1B0AC18   A0A0L0BYQ7   A0A1A9XE12   A0A1I8M8S0   A0A1I8PF42   A0A1Q3G0R8   A0A1B0BVY6   E0VSV5   A0A2M4ANX4   B4L585   B3NYA3   A0A0J9R6P7   J9JQD1   P25991-4   A0A0P8XS09   A0A0R1E736   B4IM34   A0A1W4WDD0   B4NEU6   A0A0M5J1D0   A0A158NHM7   A0A2S2R309   B5DLV3   A0A2M4BGT1   A0A1W7R5N0   Q6V8Y2   A0A3B0K687   O96641   B4JKH5   B4H4H0   A0A182W069   B0W9I8   A0A226ETM0  

Pubmed

19121390    26354079    28756777    22118469    20798317    24845553    + More
28648823    24508170    30249741    21719571    25474469    18362917    19820115    25401762    26823975    23537049    25244985    24438588    20920257    23761445    12364791    14747013    17210077    25348373    25315136    17510324    26108605    20566863    17994087    22936249    8436295    10731132    12537572    12537569    17372656    18327897    17550304    21347285    15632085    9826695    18057021   

EMBL

BABH01035077    BABH01035078    NWSH01004637    PCG64834.1    KQ459593    KPI96386.1    + More
KZ150147    PZC72869.1    AGBW02008219    OWR53995.1    ODYU01008301    SOQ51772.1    KQ460152    KPJ17341.1    KQ434889    KZC10328.1    GBYB01015250    JAG85017.1    KQ435894    KOX69353.1    KQ764772    OAD54401.1    KQ414624    KOC67537.1    GL443286    EFN62227.1    KK852785    KDR16574.1    NNAY01003069    OXU20030.1    KK107031    EZA62089.1    QOIP01000008    RLU19326.1    KQ976694    KYM77633.1    KQ979039    KYN23433.1    GL888555    EGI59551.1    GL451265    EFN79573.1    KQ976870    KYN07813.1    GEDC01024752    GEDC01007151    JAS12546.1    JAS30147.1    ACPB03006075    GBBI01002439    JAC16273.1    KZ288248    PBC31163.1    LBMM01002026    KMQ95377.1    GEBQ01024017    JAT15960.1    KQ981208    KYN44814.1    KQ971348    EFA05540.1    GBHO01011496    GBRD01007570    GDHC01001156    JAG32108.1    JAG58251.1    JAQ17473.1    APGK01055258    KB741261    KB632413    ENN71639.1    ERL95267.1    GECU01002658    JAT05049.1    GECZ01030281    JAS39488.1    AXCN02000193    AJVK01030700    GECU01011706    JAS96000.1    ATLV01015604    KE525023    KFB40518.1    GGFK01008790    MBW42111.1    AJWK01006903    GGFJ01002559    MBW51700.1    KQ982409    KYQ56647.1    AXCM01000884    GECZ01008841    JAS60928.1    ADMH02001371    ETN62749.1    AAAB01008859    EAA07937.5    APCN01000612    GDHF01032141    GDHF01015087    GDHF01009790    GDHF01003337    JAI20173.1    JAI37227.1    JAI42524.1    JAI48977.1    GAKP01011728    GAKP01011727    GAKP01011726    GAKP01011725    JAC47227.1    GFDF01008447    JAV05637.1    CH477356    EAT42772.1    CVRI01000020    CRK90547.1    JRES01001143    KNC25160.1    GFDL01001655    JAV33390.1    JXJN01021534    DS235758    EEB16461.1    GGFK01009152    MBW42473.1    CH933811    EDW06344.1    CH954180    EDV47688.1    CM002911    KMY91726.1    ABLF02031355    X62679    AE014298    BT012671    BT021384    AY102664    CH902630    KPU77416.1    CH891579    KRK05040.1    CH480924    EDW43670.1    CH964239    EDW82265.1    CP012528    ALC49674.1    ADTU01015668    ADTU01015669    ADTU01015670    ADTU01015671    ADTU01015672    ADTU01015673    ADTU01015674    ADTU01015675    ADTU01015676    GGMS01014519    MBY83722.1    CH379064    EDY72500.2    GGFJ01003020    MBW52161.1    GEHC01001212    JAV46433.1    AY347747    AAR01873.1    OUUW01000025    SPP89644.1    AF097830    CH940653    AAC99436.1    KRF80528.1    CH916370    EDW00078.1    CH479209    EDW32721.1    DS231864    EDS40213.1    LNIX01000002    OXA60580.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000076502    + More
UP000053105    UP000005203    UP000053825    UP000000311    UP000027135    UP000215335    UP000053097    UP000279307    UP000078540    UP000078492    UP000007755    UP000008237    UP000078542    UP000015103    UP000192223    UP000242457    UP000036403    UP000078541    UP000007266    UP000019118    UP000030742    UP000076408    UP000075881    UP000075885    UP000075880    UP000075900    UP000075886    UP000092462    UP000030765    UP000069272    UP000092461    UP000075809    UP000075883    UP000000673    UP000075903    UP000076407    UP000007062    UP000075840    UP000075902    UP000075884    UP000095301    UP000008820    UP000091820    UP000183832    UP000092445    UP000037069    UP000092443    UP000095300    UP000092460    UP000009046    UP000009192    UP000008711    UP000007819    UP000000803    UP000007801    UP000002282    UP000001292    UP000192221    UP000007798    UP000092553    UP000005205    UP000001819    UP000268350    UP000008792    UP000001070    UP000008744    UP000075920    UP000002320    UP000198287   

PRIDE

H9JNM9    P25991   

Pfam

PF05843   Suf        + More
PF08598   Sds3
PF01699   Na_Ca_ex

Interpro

IPR003107   HAT        + More
IPR011990   TPR-like_helical_dom_sf       
IPR008847   Suf       
IPR004827   bZIP       
IPR013907   Sds3       
IPR004837   NaCa_Exmemb       

SUPFAM

SSF48452   SSF48452       

ProteinModelPortal

H9JNM9   A0A2A4IZY6   A0A194PSH1   A0A2W1BC53   A0A212FJS9   A0A2H1WFW9   + More
A0A194RMW6   A0A154PG94   A0A0C9S0B0   A0A0M8ZTK3   A0A310S893   A0A088AKK0   A0A0L7R9J2   E2AWC7   A0A067R195   A0A232ENU7   A0A026X3Y1   A0A3L8DG90   A0A195AZG7   A0A195EE00   F4X1W4   E2BXK4   A0A195D4K0   A0A1B6CGC0   T1HT88   A0A1W4X9X1   A0A023F598   A0A2A3EH94   A0A0J7KXU5   A0A1B6KX04   A0A195FYA3   D2A3P0   A0A0A9YM07   N6SVB2   A0A1B6K0U8   A0A1B6ENK3   A0A182Y4B2   A0A182JTF5   A0A182P5T0   A0A182IRV9   A0A182RNQ7   A0A182QHX7   A0A1B0DCA6   A0A1B6J9Z5   A0A084VRC4   A0A2M4AMV5   A0A182F7E1   A0A1B0CCL9   A0A2M4BF68   A0A151X8E4   A0A182MUI8   A0A1B6GER8   W5JIY1   A0A182VE99   A0A182WRJ2   Q7QDA0   A0A182HU85   A0A182TDN5   A0A182N635   A0A1S4FBE7   A0A0K8VUG6   A0A034VYT8   A0A1L8DGX8   A0A1I8M8R5   Q0IFE2   A0A1A9W3Z9   A0A1J1HRE8   A0A1B0AC18   A0A0L0BYQ7   A0A1A9XE12   A0A1I8M8S0   A0A1I8PF42   A0A1Q3G0R8   A0A1B0BVY6   E0VSV5   A0A2M4ANX4   B4L585   B3NYA3   A0A0J9R6P7   J9JQD1   P25991-4   A0A0P8XS09   A0A0R1E736   B4IM34   A0A1W4WDD0   B4NEU6   A0A0M5J1D0   A0A158NHM7   A0A2S2R309   B5DLV3   A0A2M4BGT1   A0A1W7R5N0   Q6V8Y2   A0A3B0K687   O96641   B4JKH5   B4H4H0   A0A182W069   B0W9I8   A0A226ETM0  

PDB

2OOE     E-value=0,     Score=1925

KEGG

101741570    K14408 cleavage stimulation factor subunit 3 | (RefSeq) protein suppressor of forked

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0006397   GO:0005634   GO:0031123   GO:0003729   GO:0003700   GO:0005848   GO:1903220   GO:0016021   GO:0055085   GO:0006396   GO:0005515   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

727

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03521

Exp number, first 60 AAs:

0.00034

Total prob of N-in:

0.00071

outside

1  -  727

 

 

Pi

17.086106

Theta

17.159136

Tajima's D

-1.469072

CLR

111.892458

CSRT

0.0620968951552422

Interpretation

Uncertain