Gene

KWMTBOMO14184  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011132

Annotation

U6_snRNA-associated_Sm-like_protein_LSm2_[Operophtera_brumata]

Location

Bomo_Chr23(-):20011933-20012331      View in EpiBrowser

Full name

U6 snRNA-associated Sm-like protein LSm2      

Location in the cell

Nuclear   Reliability : 1.832

CDS

ATGTTGTTTTACTCGTTTTTCAAATCGTTAGTCGGTAAGGATGTAGTCGTCGAGCTGAAAAATGACCTCAGCATATGTGGGACGTTGCATTCTGTGGATCAATATCTCAATATAAAGCTTTCGGATATAAGCGTGATTGACTCTGAAAAGTATCCTCATATGTTATCAGTGAAAAATTGTTTTATAAGAGGCTCCGTGGTTCGATACGTACAACTGCCGGCTGATGAGGTAGACACCCAGCTTCTCCAGGATGCCGCTAGAAAGGAGGCGACCGTTTCAACAAGATAG

Protein

MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEATVSTR

Description

Binds specifically to the 3'-terminal U-tract of U6 snRNA.

Similarity

Belongs to the snRNP Sm proteins family.

Uniprot

A0A0L7L5U9   A0A2W1BCZ8   A0A2H1WFD9   S4PPF6   A0A194PZ02   D6WBR3   + More
A0A1A9WD03   A0A1W4XH99   B4L066   B3M7T6   A0A0L0BWN0   A0A2R5LG58   A0A1B0G3P4   A0A1A9YKR5   A0A1A9URT5   A0A1B0C0C6   A0A1Z5LFB2   N6TPC3   A0A1W4UGX3   B4LFF8   Q9VTW6   B4PGC1   B4N3J0   B4HFL6   B3NH93   B4QR91   Q5RKP8   W8C048   A0A1Q3FUS5   A0A182YNR3   A0A182Q0W0   A0A182V4V9   A0A182N7Z4   Q17LD2   A0A182LBE4   A0A182XTH7   Q7PQ03   A0A182HP54   A0A023ECH8   A0A0K8TRI8   A0A1B0D5H2   A0A1B0GI52   A0A0P4VYA5   A0A293MHL1   A0A3Q7RKR1   A0A3B0KQC5   Q2M0N7   B4GRD5   B7QF41   A0A0K8RDN5   A0A2S2N493   U5ELI6   A0A182WAC1   A0A2M4AZC3   A0A2M4C4Q8   W5J9N6   A0A182FH97   A0A3Q3S0G5   A0A067QFW5   A0A3P8UQ36   A0A3B4WG76   A0A3B3XPE5   A0A3B4GWC9   A0A3Q1GAB9   A0A3B5APL1   A0A3Q3DZT1   A0A2I4CCT9   W5MD35   A0A3B3RYH1   G3NI70   A0A3Q1JNJ5   A0A087X6Y2   A0A3B3BAA6   A0A3B4VH84   A0A3Q3ASV6   A0A3Q3K346   A0A3B3VTF3   I3KT75   A0A0E9X3P2   A0A3B1IFD5   A0A3B3IAS1   A0A3B4DCP3   A0A3P8R3F5   H3B5C4   A0A1A8R8A5   A0A1A8QJF2   A0A1A8IAL9   A0A1A7YRD4   A0A0P7Z647   E3TF96   A0A1A8E4J3   A0A1A8FP03   A0A1A8V8Q2   B4J336   C1C4Z7   Q52KE0   Q5BL46   A0A2U9C6S1   V9LKC1   V9ILZ7  

Pubmed

26227816    28756777    23622113    26354079    18362917    19820115    + More
17994087    26108605    28528879    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    22936249    23594743    24495485    25244985    17510324    20966253    12364791    14747013    17210077    24945155    26483478    26369729    27129103    15632085    20920257    23761445    24845553    24487278    29240929    29451363    25186727    25613341    25329095    17554307    9215903    20634964    27762356    20431018    24402279   

EMBL

JTDY01002804    KOB70686.1    KZ150147    PZC72868.1    ODYU01008301    SOQ51771.1    + More
GAIX01000277    JAA92283.1    KQ459593    KPI96385.1    KQ971314    EEZ97873.1    CH933809    EDW18012.1    CH902618    EDV38809.2    JRES01001238    KNC24416.1    GGLE01004375    MBY08501.1    CCAG010015898    JXJN01023513    GFJQ02001276    JAW05694.1    APGK01026590    KB740635    KB631996    KI210453    ENN79873.1    ERL87789.1    ERL96271.1    CH940647    EDW69256.1    AE014296    AAF49929.1    CM000159    EDW94285.1    CH964095    EDW79195.2    CH480815    EDW41247.1    CH954178    EDV51550.2    CM000363    CM002912    EDX10221.1    KMY99215.1    FP101882    BC085441    BC152150    BC164435    AAH85441.1    AAI52151.1    AAI64435.1    GAMC01001528    JAC05028.1    GFDL01003740    JAV31305.1    AXCN02000909    CH477216    EAT47530.1    AAAB01008900    EAA09471.3    APCN01002921    JXUM01123609    GAPW01006546    KQ566736    JAC07052.1    KXJ69874.1    GDAI01000850    JAI16753.1    AJVK01025246    AJWK01011307    GDKW01000992    JAI55603.1    GFWV01015177    MAA39906.1    OUUW01000012    SPP87411.1    CH379069    EAL30893.1    CH479188    EDW40320.1    ABJB010168149    ABJB010353024    DS923918    EEC17463.1    GADI01004632    GEFM01003833    JAA69176.1    JAP71963.1    GGMT01000287    MBY11973.1    GANO01001390    JAB58481.1    GGFK01012825    MBW46146.1    GGFJ01011094    MBW60235.1    ADMH02002078    ETN59459.1    KK869568    KDR06681.1    AHAT01015189    AYCK01014133    AERX01011533    GBXM01011245    JAH97332.1    AFYH01090908    AFYH01090909    HAEH01015127    HAEI01008199    SBS01922.1    HAEF01008255    HAEG01012783    SBR93234.1    HAED01007945    HAEE01012874    SBQ94157.1    HADW01004822    HADX01010529    SBP32761.1    JARO02001213    KPP76144.1    GU589030    ADO28982.1    HADZ01010773    HAEA01011529    SBQ40009.1    HAEB01014588    HAEC01005412    SBQ61115.1    HADY01016841    HAEJ01015500    SBS55957.1    CH916366    EDV96107.1    BT081926    ACO52057.1    BC094397    CM004481    AAH94397.1    OCT66214.1    AAMC01092845    BC090606    CR761142    AAH90606.1    CAJ81423.1    CP026254    AWP11426.1    JW881425    AFP13942.1    JR050874    AEY61374.1   

Proteomes

UP000037510    UP000053268    UP000007266    UP000091820    UP000192223    UP000009192    + More
UP000007801    UP000037069    UP000092444    UP000092443    UP000078200    UP000092460    UP000019118    UP000030742    UP000192221    UP000008792    UP000000803    UP000002282    UP000007798    UP000001292    UP000008711    UP000000304    UP000000437    UP000076408    UP000075886    UP000075903    UP000075884    UP000008820    UP000075882    UP000076407    UP000007062    UP000075840    UP000069940    UP000249989    UP000092462    UP000092461    UP000286640    UP000268350    UP000001819    UP000008744    UP000001555    UP000075920    UP000000673    UP000069272    UP000261640    UP000027135    UP000265120    UP000261360    UP000261480    UP000261460    UP000257200    UP000261400    UP000264820    UP000192220    UP000018468    UP000261540    UP000007635    UP000265040    UP000028760    UP000261560    UP000261420    UP000264800    UP000261600    UP000261500    UP000005207    UP000018467    UP000001038    UP000261440    UP000265100    UP000008672    UP000034805    UP000192224    UP000221080    UP000001070    UP000186698    UP000008143    UP000246464   

PRIDE

Q9VTW6   

Pfam

PF01423   LSM

Interpro

IPR016654   U6_snRNA_Lsm2        + More
IPR010920   LSM_dom_sf       
IPR001163   LSM_dom_euk/arc       

SUPFAM

SSF50182   SSF50182       

CDD

cd01725  LSm2

ProteinModelPortal

A0A0L7L5U9   A0A2W1BCZ8   A0A2H1WFD9   S4PPF6   A0A194PZ02   D6WBR3   + More
A0A1A9WD03   A0A1W4XH99   B4L066   B3M7T6   A0A0L0BWN0   A0A2R5LG58   A0A1B0G3P4   A0A1A9YKR5   A0A1A9URT5   A0A1B0C0C6   A0A1Z5LFB2   N6TPC3   A0A1W4UGX3   B4LFF8   Q9VTW6   B4PGC1   B4N3J0   B4HFL6   B3NH93   B4QR91   Q5RKP8   W8C048   A0A1Q3FUS5   A0A182YNR3   A0A182Q0W0   A0A182V4V9   A0A182N7Z4   Q17LD2   A0A182LBE4   A0A182XTH7   Q7PQ03   A0A182HP54   A0A023ECH8   A0A0K8TRI8   A0A1B0D5H2   A0A1B0GI52   A0A0P4VYA5   A0A293MHL1   A0A3Q7RKR1   A0A3B0KQC5   Q2M0N7   B4GRD5   B7QF41   A0A0K8RDN5   A0A2S2N493   U5ELI6   A0A182WAC1   A0A2M4AZC3   A0A2M4C4Q8   W5J9N6   A0A182FH97   A0A3Q3S0G5   A0A067QFW5   A0A3P8UQ36   A0A3B4WG76   A0A3B3XPE5   A0A3B4GWC9   A0A3Q1GAB9   A0A3B5APL1   A0A3Q3DZT1   A0A2I4CCT9   W5MD35   A0A3B3RYH1   G3NI70   A0A3Q1JNJ5   A0A087X6Y2   A0A3B3BAA6   A0A3B4VH84   A0A3Q3ASV6   A0A3Q3K346   A0A3B3VTF3   I3KT75   A0A0E9X3P2   A0A3B1IFD5   A0A3B3IAS1   A0A3B4DCP3   A0A3P8R3F5   H3B5C4   A0A1A8R8A5   A0A1A8QJF2   A0A1A8IAL9   A0A1A7YRD4   A0A0P7Z647   E3TF96   A0A1A8E4J3   A0A1A8FP03   A0A1A8V8Q2   B4J336   C1C4Z7   Q52KE0   Q5BL46   A0A2U9C6S1   V9LKC1   V9ILZ7  

PDB

6QX9     E-value=4.35831e-42,     Score=424

KEGG

101741431    K12621 U6 snRNA-associated Sm-like protein LSm2 | (RefSeq) U6 snRNA-associated Sm-like protein LSm2

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)
03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005681   GO:0005688   GO:0046540   GO:0000932   GO:0000398   GO:1990726   GO:0071013   GO:0006397   GO:0030532   GO:0071011   GO:0000381   GO:0005634   GO:0006355   GO:0043565   GO:0009982   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR13829  

Length:

95

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.04420

outside

1  -  95

 

 

Pi

11.113232

Theta

11.435017

Tajima's D

-0.083331

CLR

0

CSRT

0.357582120893955

Interpretation

Uncertain