Gene

KWMTBOMO14179  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011099

Annotation

Brain-specific_homeobox_protein_[Papilio_xuthus]

Location

Bomo_Chr23(-):19879577-19887699      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.795 Nuclear   Reliability : 1.484

CDS

ATGGGTTGGGCTGTGGCTATCTTCGTATTTCTCTTCATCGCTGGAGCTCATTGTGAAGACGTTAAAACACCTGGAGCCAGCGCCAACGTTACTGCAGGATCACCTAAGGCCCCGGCCTCCGATATTTGTAGGCAGTGCGTTTGCAAAGACAATAAAGTTAATTGTTACGATCAGAATCTGGACACGTTCTTCAGTAAAGAAGAATGGGCAGCGCTCGCGGACTTCAAGCCGAAAATAGTTGATTTGAGTGAGAACTCATTCACGAACGTGACGCTCATGGCGGATCTGTCAATAGAGATACTGAACTTGTCTCGTTGCAAGATCGATGTCATAGAAAACGCCAGCTTCAAGGAGCTACAGGAGATGCGAGTTCTCGACTTAAGCTACAATAAGTTGACGGCGGCGAAGCTGAGCCCGCACGCTTTTGAGGGTAAATACACCCCGGAACAATACGAGCCTCTAGCAGCGATGCGCGTTCTCAATCTAGCGTACAACGATCTGCACTCCTTGAACCAGGATCTGTTCGAACACTTACCGCAGTTGGAGGAGCTGGATATCAGTGGGAATCCCCTGACCACGATAGATCACGTTACTTTGATTGCCATTTCGAGTTTGCCGATGCTCAAGGTGTTGAGAATGCGTTCTTGCCAACTGACCGAGATCCCTGAAAAGTTCCTCCACACTCCACTCTACTTGAGTCGCTTAGACATAAGCGACAACCAGCTGACCGCCGTTCCTCAAGAGTTGGAAGAAACCAAGAACCTGGAATACCTTAACCTGAACCAAAACCCTATCAGAGAATTAGATATGACCTCTGAAGATTACCCTGGCTTCCCCCGTCTGCGCAAGCTGAAGGAGCTACATATGTGCAACATGCCTTCTCTGCGTCGTATCGGTCCAGGGGCACTTGCTGGCCTGGAATCTCTTGAGAGTCTTCACATGAGCTTGAATCCATCTTTGGAGTTCATCGATCCGAAGGCACTCGCTAGACCTGATGATATCGGGGAAACCTATGACTGGCCGCTCATCAAGCAATTGTATCTTCAATCGAATAACCTCTCCGACATCGACTCAAGGCTGCTCTCCCGCTGGGACCTGCTGGAGAAGATAGATGTGTCCGACAATCCTTACCTATGCGACTGCTCCACGCAATGGATAGTGGACGTCCTTGTGCCCTTGATTGAAGAGAAGAAAACCAATTCATCGTTGATGGTGTGCCACGAGCCAATTGAAATGAGAGGCTACACATTGAAGCATTTGAACGAGATCCACAGGCACATGAGATGCGTCGACAAATACGGCAACAGGCCTGAGCGAGACGGAGCTATACTACTCGGAACGTTGATAGGCGTGTTATTGGCTGTGCCAATAATGCTAGGTCTGGTGCTTCTCTGGCGTAAAGGCTACTTCGGTTGGCTTGGACTCCGGGGACCCGTTGACGTTTCCAGAGCGTTCTACAAGCGGGCACCCGCAGATGACAATCTATTTTAG

Protein

MGWAVAIFVFLFIAGAHCEDVKTPGASANVTAGSPKAPASDICRQCVCKDNKVNCYDQNLDTFFSKEEWAALADFKPKIVDLSENSFTNVTLMADLSIEILNLSRCKIDVIENASFKELQEMRVLDLSYNKLTAAKLSPHAFEGKYTPEQYEPLAAMRVLNLAYNDLHSLNQDLFEHLPQLEELDISGNPLTTIDHVTLIAISSLPMLKVLRMRSCQLTEIPEKFLHTPLYLSRLDISDNQLTAVPQELEETKNLEYLNLNQNPIRELDMTSEDYPGFPRLRKLKELHMCNMPSLRRIGPGALAGLESLESLHMSLNPSLEFIDPKALARPDDIGETYDWPLIKQLYLQSNNLSDIDSRLLSRWDLLEKIDVSDNPYLCDCSTQWIVDVLVPLIEEKKTNSSLMVCHEPIEMRGYTLKHLNEIHRHMRCVDKYGNRPERDGAILLGTLIGVLLAVPIMLGLVLLWRKGYFGWLGLRGPVDVSRAFYKRAPADDNLF

Uniprot

H9JNJ5   A0A2W1BKI3   A0A2A4JL00   A0A194PTP7   A0A2H1WHS9   A0A194RN09   + More
A0A3S2NVG7   A0A212EP83   A0A212F2K0   A0A0L7KT86   A0A1B0GJL0   F4WVP7   A0A158NHH8   A0A195D4C5   A0A1L8DA95   A0A1L8D9V6   A0A026WSV6   A0A1L8DAA7   A0A1L8D9X1   A0A195AVC3   U5EN60   A0A182QLN0   A0A2A3EK65   A0A151XFB0   A0A182RD26   A0A182Y1F1   A0A3S2NES1   A0A2A4JLS1   A0A182MAA0   A0A088AD10   A0A182SUI7   A0A154PES5   A0A2W1BMS2   A0A067R5N2   A0A023EUJ3   A0A182H3K1   A0A182JY92   K7ISR8   Q17IL4   A0A084WIB3   A0A232F0N9   Q7Q0F7   A0A182FBB6   A0A195FYI4   W5JFS7   A0A182P5U0   A0A1B6JDB4   A0A2J7Q0W9   A0A2M4BJW6   A0A2M4BK90   A0A195E2E8   A0A2M4AQC4   A0A1Q3FM23   T1EA71   H9JNJ6   E2AJI2   A0A182PL02   A0A0C9QDK7   A0A1Q3FMW8   A0A182JB39   A0A1Q3FN08   A0A0J7NFK4   J3JT89   A0A0M8ZUW4   U4ULG7   A0A2P8XGE3   A0A182KS95   A0A2M4BMP6   N6U3U4   A0A182WEW0   A0A182U3V5   E2BHI9   E9I858   A0A1W4WJZ5   A0A3S2TGS3   A0A182HQE6   R4WI11   A0A182XF02   A0A1J1IH94   A0A224XBY4   A0A0L7QWZ7   T1IG52   A0A0P4VPE2   R4G3L2   A0A0L0BY65   D2A4M8   A0A2S2P7Y3   A0A0K8UP11   A0A2S2QBU6   A0A034W330   A0A034W5S6   Q17IL3   A0A2R7WNZ3   A0A1Y1LJ54   A0A2H8TM79   A0A1I8PJH9   A0A0C9PK48   A0A2H1WJI8   E0W140   A0A1L8EGB5  

Pubmed

19121390    28756777    26354079    22118469    26227816    21719571    + More
21347285    24508170    30249741    25244985    24845553    24945155    26483478    20075255    17510324    24438588    28648823    12364791    20920257    23761445    20798317    22516182    23537049    29403074    20966253    21282665    23691247    27129103    26108605    18362917    19820115    25348373    28004739    20566863   

EMBL

BABH01041258    KZ149991    PZC75592.1    NWSH01001078    PCG72727.1    KQ459593    + More
KPI96348.1    ODYU01008753    SOQ52625.1    KQ460152    KPJ17386.1    RSAL01000156    RVE45598.1    AGBW02013524    OWR43267.1    AGBW02010733    OWR47952.1    JTDY01005908    KOB66493.1    AJWK01021911    GL888393    EGI61717.1    ADTU01015829    ADTU01015830    KQ976870    KYN07732.1    GFDF01010824    JAV03260.1    GFDF01010828    JAV03256.1    KK107131    QOIP01000012    EZA58169.1    RLU15948.1    GFDF01010830    JAV03254.1    GFDF01010825    JAV03259.1    KQ976737    KYM75924.1    GANO01004248    JAB55623.1    AXCN02001027    KZ288220    PBC32165.1    KQ982194    KYQ59047.1    RVE45596.1    PCG72726.1    AXCM01014879    KQ434889    KZC10349.1    PZC75591.1    KK852945    KDR13449.1    GAPW01000997    JAC12601.1    JXUM01025059    JXUM01025060    KQ560709    KXJ81202.1    AAZX01002901    CH477238    EAT46546.1    ATLV01023925    KE525347    KFB49957.1    NNAY01001330    OXU24336.1    AAAB01008986    EAA00711.3    KQ981208    KYN44894.1    ADMH02001279    ETN63232.1    GECU01016276    GECU01010773    JAS91430.1    JAS96933.1    NEVH01019960    PNF22240.1    GGFJ01004228    MBW53369.1    GGFJ01004230    MBW53371.1    KQ979763    KYN19251.1    GGFK01009487    MBW42808.1    GFDL01006448    JAV28597.1    GAMD01000692    JAB00899.1    GL440027    EFN66377.1    GBYB01001389    JAG71156.1    GFDL01006115    JAV28930.1    GFDL01006123    JAV28922.1    LBMM01005643    KMQ91340.1    BT126445    AEE61409.1    KQ435878    KOX70019.1    KB632260    ERL90835.1    PYGN01002234    PSN31055.1    GGFJ01005184    MBW54325.1    APGK01050579    APGK01050580    APGK01050581    KB741174    ENN73247.1    GL448301    EFN84842.1    GL761471    EFZ23241.1    RVE45599.1    APCN01003326    AK417000    BAN20215.1    CVRI01000051    CRK99621.1    GFTR01006500    JAW09926.1    KQ414706    KOC63091.1    ACPB03011560    ACPB03011561    GDKW01002381    JAI54214.1    GAHY01002110    JAA75400.1    JRES01001167    KNC24911.1    KQ971344    EFA05244.1    GGMR01012948    MBY25567.1    GDHF01023892    JAI28422.1    GGMS01006026    MBY75229.1    GAKP01009833    JAC49119.1    GAKP01009834    JAC49118.1    EAT46547.1    KK855184    PTY21336.1    GEZM01055824    JAV72921.1    GFXV01003458    MBW15263.1    GBYB01001388    JAG71155.1    SOQ52624.1    DS235866    EEB19346.1    GFDG01001115    JAV17684.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000037510    UP000092461    UP000007755    UP000005205    UP000078542    UP000053097    UP000279307    UP000078540    UP000075886    UP000242457    UP000075809    UP000075900    UP000076408    UP000075883    UP000005203    UP000075901    UP000076502    UP000027135    UP000069940    UP000249989    UP000075881    UP000002358    UP000008820    UP000030765    UP000215335    UP000007062    UP000069272    UP000078541    UP000000673    UP000075885    UP000235965    UP000078492    UP000000311    UP000075880    UP000036403    UP000053105    UP000030742    UP000245037    UP000075882    UP000019118    UP000075920    UP000075902    UP000008237    UP000192223    UP000075840    UP000076407    UP000183832    UP000053825    UP000015103    UP000037069    UP000007266    UP000095300    UP000009046   

PRIDE

H9JNJ5    H9JNJ6   

Pfam

PF13855   LRR_8        + More
PF00046   Homeodomain
PF13516   LRR_6
PF00560   LRR_1
PF13306   LRR_5

Interpro

IPR032675   LRR_dom_sf        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR017970   Homeobox_CS       
IPR000483   Cys-rich_flank_reg_C       
IPR001356   Homeobox_dom       
IPR009057   Homeobox-like_sf       
IPR020479   Homeobox_metazoa       
IPR026906   LRR_5       
IPR018184   Integrin_alpha_C_CS       

SUPFAM

SSF46689   SSF46689       

Gene 3D

3.80.10.10    

CDD

cd00086  homeodomain

ProteinModelPortal

H9JNJ5   A0A2W1BKI3   A0A2A4JL00   A0A194PTP7   A0A2H1WHS9   A0A194RN09   + More
A0A3S2NVG7   A0A212EP83   A0A212F2K0   A0A0L7KT86   A0A1B0GJL0   F4WVP7   A0A158NHH8   A0A195D4C5   A0A1L8DA95   A0A1L8D9V6   A0A026WSV6   A0A1L8DAA7   A0A1L8D9X1   A0A195AVC3   U5EN60   A0A182QLN0   A0A2A3EK65   A0A151XFB0   A0A182RD26   A0A182Y1F1   A0A3S2NES1   A0A2A4JLS1   A0A182MAA0   A0A088AD10   A0A182SUI7   A0A154PES5   A0A2W1BMS2   A0A067R5N2   A0A023EUJ3   A0A182H3K1   A0A182JY92   K7ISR8   Q17IL4   A0A084WIB3   A0A232F0N9   Q7Q0F7   A0A182FBB6   A0A195FYI4   W5JFS7   A0A182P5U0   A0A1B6JDB4   A0A2J7Q0W9   A0A2M4BJW6   A0A2M4BK90   A0A195E2E8   A0A2M4AQC4   A0A1Q3FM23   T1EA71   H9JNJ6   E2AJI2   A0A182PL02   A0A0C9QDK7   A0A1Q3FMW8   A0A182JB39   A0A1Q3FN08   A0A0J7NFK4   J3JT89   A0A0M8ZUW4   U4ULG7   A0A2P8XGE3   A0A182KS95   A0A2M4BMP6   N6U3U4   A0A182WEW0   A0A182U3V5   E2BHI9   E9I858   A0A1W4WJZ5   A0A3S2TGS3   A0A182HQE6   R4WI11   A0A182XF02   A0A1J1IH94   A0A224XBY4   A0A0L7QWZ7   T1IG52   A0A0P4VPE2   R4G3L2   A0A0L0BY65   D2A4M8   A0A2S2P7Y3   A0A0K8UP11   A0A2S2QBU6   A0A034W330   A0A034W5S6   Q17IL3   A0A2R7WNZ3   A0A1Y1LJ54   A0A2H8TM79   A0A1I8PJH9   A0A0C9PK48   A0A2H1WJI8   E0W140   A0A1L8EGB5  

PDB

4PSJ     E-value=4.25952e-16,     Score=208

KEGG

101736717    no KO assigned | (RefSeq) leucine-rich repeat neuronal protein 3-like

GO

GO:0016021   GO:0005634   GO:0043565   GO:0006355   GO:0005615   GO:0031012   GO:0004180   GO:0005515   GO:0003676   GO:0009451   GO:0009982   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

SignalP

Position:   1 - 18,         Likelihood:  0.999168

 

 

Length:

496

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.22349

Exp number, first 60 AAs:

0.18156

Total prob of N-in:

0.04670

outside

1  -  442

TMhelix

443  -  465

inside

466  -  496

 

 

Pi

26.653391

Theta

25.95836

Tajima's D

0.053363

CLR

0.954448

CSRT

0.387830608469577

Interpretation

Uncertain