Gene

KWMTBOMO14178

Pre Gene Modal

BGIBMGA011100

Annotation

PREDICTED:_leucine-rich_repeat_neuronal_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr23(-):19864030-19873589      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.238 PlasmaMembrane   Reliability : 1.837

CDS

ATGTTTTACTGTAAATATATGTTTATTATTTTATTCTTATTAACGAGAACACAAAAACAAATTAGTCAAGCAGCAGAATTACAAGCTATTGAGCAGACAGGAACGGTTACAGAAATCATTCCATCAGTTACAGTCAGTGCATTAGCCGATTTCGAAAGCAATGGAGAAACTACCACAGATGTTGCGGTGTTAAAGCAAGGAGAAGCCAGCGAAGGGACTTCGGCAGTAGGAACTACAGAAGTCACGGAAGTGATCGACTCTGAACCCGTTTCTGAAGTTATTTGCGCGGTATGCAACTGCAGCGACAGTGTTGTGAATTGCAGTGGCAAGGAAATCCGTACCTCCTTCGAGATGACTGACTGGGAGGGTCTGCAAGAATTCAAACCAGTTAGTGTTGACCTTAGCAATAATCACATAGGTACGTTAACGAGAATCTCAAAATTGGATACCTTGAAATACTTGAATGTGTCAAACTGCGAACTTCTCGGCATCGAACATGCGACCTTCAGTTATCTACAGGAATTAGTTAGTTTGGATTTAAGCAGGAATCAATTGTTAAGTTCCTCAATCAACAAAAGGGTGTTTGTGGGTATTATAGATCCGATCCTAGGTCTTCTACCTTTCTCGAAACTCCGGTATTTAAGTTTGGCCAACAACGAAATCCATTCGCTACCACAAGACGTGTTCCTGTTTATGAATGAATTGACAACCCTTGATTTAAGTGACAATCCTATGGCGTATATCGATCAAGTAACAATGGGAGCTATCACCGATTTGGACGACCTGCAGGAACTCTACCTTCGGGGCTGTGAATTAGAAAGTCTTCCGGAAGGTTTCTTTAGAAGGCAGCGTCGTCTCGTGAAGCTGGATCTGAGCAATAACAGATTCACCACCGTTCCTGCCGTACTGGCAGAAGCAGTCACTCTGAAGTATCTGAACTTTGGCAGGAATCCTGTTGGAGCGCTGAACGATACCTCGGTATTTCCAAATCTGATTAGGCTGCGAGAGCTCCGCCTATGTCGCATGAGTAAGCTGCGCTCAGTGTCTGCCCGCGCTCTCGGAGGTCTCAAGAGTCTGGAAACATTACATTTGTGCTCGAATCCACGTCTCACCGATTTGGATCCTGAATTCTTGACGTGGACGGAGGATGAAGTAGAAATGTGGCCGACTTTGAGAGAGCTGCGTCTCAACAACAATAATCTATCGACAATCCACTCGAATTACCTAGCCCGCTGGGACCGGCTGAACGCCTTAGACTTCGGCAACAACCCCTACATCTGTGACTGCAGGAGTCAATGGACTATTGACGTGCTCATACCAATCATTCTCAAAAGTTCCCATAACGAAACTGCCAGTCATATGATCTGTAAAATGCCTCACGAAACCAGAGGTCTAACCCTGGTCCAGTTGTTTGAGACATCGAAGAAGCTCTCTTGCCTTGAAAACGAGAGCCTCAAGGCATCCCCTGGGCCGGACATGGCTATTCTACTTGGAATCATGATTGGTATATTCGTAACATTCCCTATAGTTCTGATAGTAATCTTGCTGTGGAGGAGAGGGTTCTTTGCGCGTTGCCGTTCGAAAACCATTGAGAAGGATGAAGATGAGGAATCGTATCCGCTCTGA

Protein

MFYCKYMFIILFLLTRTQKQISQAAELQAIEQTGTVTEIIPSVTVSALADFESNGETTTDVAVLKQGEASEGTSAVGTTEVTEVIDSEPVSEVICAVCNCSDSVVNCSGKEIRTSFEMTDWEGLQEFKPVSVDLSNNHIGTLTRISKLDTLKYLNVSNCELLGIEHATFSYLQELVSLDLSRNQLLSSSINKRVFVGIIDPILGLLPFSKLRYLSLANNEIHSLPQDVFLFMNELTTLDLSDNPMAYIDQVTMGAITDLDDLQELYLRGCELESLPEGFFRRQRRLVKLDLSNNRFTTVPAVLAEAVTLKYLNFGRNPVGALNDTSVFPNLIRLRELRLCRMSKLRSVSARALGGLKSLETLHLCSNPRLTDLDPEFLTWTEDEVEMWPTLRELRLNNNNLSTIHSNYLARWDRLNALDFGNNPYICDCRSQWTIDVLIPIILKSSHNETASHMICKMPHETRGLTLVQLFETSKKLSCLENESLKASPGPDMAILLGIMIGIFVTFPIVLIVILLWRRGFFARCRSKTIEKDEDEESYPL

Uniprot

H9JNJ6   A0A2A4JLS1   A0A2W1BMS2   A0A2A4JL00   A0A2W1BKI3   A0A2H1WHS9   + More
A0A194PTP7   H9JNJ5   A0A194RN09   A0A3S2NVG7   E2BHI9   A0A0C9QDK7   A0A1W4WJZ5   A0A088AD10   A0A158NHH8   A0A2A3EK65   A0A154PES5   A0A195AVC3   F4WVP7   A0A0M8ZUW4   A0A067R5N2   A0A2P8XGE3   A0A195D4C5   A0A026WSV6   K7ISR8   E2AJI2   A0A2J7Q0W9   A0A151XFB0   A0A182H3K1   A0A023EUJ3   A0A232F0N9   A0A182JY92   A0A182SUI7   U5EN60   A0A182P5U0   Q17IL4   A0A195E2E8   A0A182QLN0   Q7Q0F7   A0A182RD26   A0A182PL02   A0A182Y1F1   D2A4M8   A0A195FYI4   A0A182MAA0   A0A0L7KT86   A0A0L7QWZ7   A0A1B0GJL0   A0A1B6JDB4   A0A0J7NFK4   A0A1Y1LJ54   A0A1L8D9V6   A0A1L8DA95   A0A182U3V5   E0W140   A0A1Q3FM23   A0A1L8DAA7   A0A1L8D9X1   A0A1Q3FMW8   A0A1Q3FN08   T1IG52   A0A0P4VPE2   A0A182KS95   R4G3L2   A0A023EQP1   V5G361   Q17IL3   A0A2S2QBU6   A0A224XBY4   R4WI11   E9I858   A0A2M4BK90   A0A2M4BJW6   T1EA71   A0A182FBB6   A0A0L0BY65   A0A2M4AQC4   A0A0K8UP11   A0A182XF02   A0A182WEW0   A0A034W330   A0A034W5S6   W5JFS7   W8B4R2   A0A084WIB3   W8BS49   A0A2H8TM79   J3JT89   N6U3U4   U4ULG7   A0A2M4BMP6   A0A1J1IH94   A0A182JB39   A0A0C9RCV0  

Pubmed

19121390    28756777    26354079    20798317    21347285    21719571    + More
24845553    29403074    24508170    30249741    20075255    26483478    24945155    28648823    17510324    12364791    25244985    18362917    19820115    26227816    28004739    20566863    27129103    20966253    23691247    21282665    26108605    25348373    20920257    23761445    24495485    24438588    22516182    23537049   

EMBL

BABH01041258    NWSH01001078    PCG72726.1    KZ149991    PZC75591.1    PCG72727.1    + More
PZC75592.1    ODYU01008753    SOQ52625.1    KQ459593    KPI96348.1    KQ460152    KPJ17386.1    RSAL01000156    RVE45598.1    GL448301    EFN84842.1    GBYB01001389    JAG71156.1    ADTU01015829    ADTU01015830    KZ288220    PBC32165.1    KQ434889    KZC10349.1    KQ976737    KYM75924.1    GL888393    EGI61717.1    KQ435878    KOX70019.1    KK852945    KDR13449.1    PYGN01002234    PSN31055.1    KQ976870    KYN07732.1    KK107131    QOIP01000012    EZA58169.1    RLU15948.1    AAZX01002901    GL440027    EFN66377.1    NEVH01019960    PNF22240.1    KQ982194    KYQ59047.1    JXUM01025059    JXUM01025060    KQ560709    KXJ81202.1    GAPW01000997    JAC12601.1    NNAY01001330    OXU24336.1    GANO01004248    JAB55623.1    CH477238    EAT46546.1    KQ979763    KYN19251.1    AXCN02001027    AAAB01008986    EAA00711.3    KQ971344    EFA05244.1    KQ981208    KYN44894.1    AXCM01014879    JTDY01005908    KOB66493.1    KQ414706    KOC63091.1    AJWK01021911    GECU01016276    GECU01010773    JAS91430.1    JAS96933.1    LBMM01005643    KMQ91340.1    GEZM01055824    JAV72921.1    GFDF01010828    JAV03256.1    GFDF01010824    JAV03260.1    DS235866    EEB19346.1    GFDL01006448    JAV28597.1    GFDF01010830    JAV03254.1    GFDF01010825    JAV03259.1    GFDL01006115    JAV28930.1    GFDL01006123    JAV28922.1    ACPB03011560    ACPB03011561    GDKW01002381    JAI54214.1    GAHY01002110    JAA75400.1    GAPW01001676    JAC11922.1    GALX01004031    JAB64435.1    EAT46547.1    GGMS01006026    MBY75229.1    GFTR01006500    JAW09926.1    AK417000    BAN20215.1    GL761471    EFZ23241.1    GGFJ01004230    MBW53371.1    GGFJ01004228    MBW53369.1    GAMD01000692    JAB00899.1    JRES01001167    KNC24911.1    GGFK01009487    MBW42808.1    GDHF01023892    JAI28422.1    GAKP01009833    JAC49119.1    GAKP01009834    JAC49118.1    ADMH02001279    ETN63232.1    GAMC01014502    JAB92053.1    ATLV01023925    KE525347    KFB49957.1    GAMC01014501    GAMC01014499    JAB92054.1    GFXV01003458    MBW15263.1    BT126445    AEE61409.1    APGK01050579    APGK01050580    APGK01050581    KB741174    ENN73247.1    KB632260    ERL90835.1    GGFJ01005184    MBW54325.1    CVRI01000051    CRK99621.1    GBYB01010962    JAG80729.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000008237    + More
UP000192223    UP000005203    UP000005205    UP000242457    UP000076502    UP000078540    UP000007755    UP000053105    UP000027135    UP000245037    UP000078542    UP000053097    UP000279307    UP000002358    UP000000311    UP000235965    UP000075809    UP000069940    UP000249989    UP000215335    UP000075881    UP000075901    UP000075885    UP000008820    UP000078492    UP000075886    UP000007062    UP000075900    UP000076408    UP000007266    UP000078541    UP000075883    UP000037510    UP000053825    UP000092461    UP000036403    UP000075902    UP000009046    UP000015103    UP000075882    UP000069272    UP000037069    UP000076407    UP000075920    UP000000673    UP000030765    UP000019118    UP000030742    UP000183832    UP000075880   

PRIDE

H9JNJ6    H9JNJ5   

Pfam

PF13855   LRR_8        + More
PF00560   LRR_1
PF13516   LRR_6
PF00046   Homeodomain
PF13306   LRR_5

Interpro

IPR001611   Leu-rich_rpt        + More
IPR018184   Integrin_alpha_C_CS       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
IPR017970   Homeobox_CS       
IPR000483   Cys-rich_flank_reg_C       
IPR001356   Homeobox_dom       
IPR009057   Homeobox-like_sf       
IPR020479   Homeobox_metazoa       
IPR026906   LRR_5       

SUPFAM

SSF46689   SSF46689       

Gene 3D

3.80.10.10    

CDD

cd00086  homeodomain

ProteinModelPortal

H9JNJ6   A0A2A4JLS1   A0A2W1BMS2   A0A2A4JL00   A0A2W1BKI3   A0A2H1WHS9   + More
A0A194PTP7   H9JNJ5   A0A194RN09   A0A3S2NVG7   E2BHI9   A0A0C9QDK7   A0A1W4WJZ5   A0A088AD10   A0A158NHH8   A0A2A3EK65   A0A154PES5   A0A195AVC3   F4WVP7   A0A0M8ZUW4   A0A067R5N2   A0A2P8XGE3   A0A195D4C5   A0A026WSV6   K7ISR8   E2AJI2   A0A2J7Q0W9   A0A151XFB0   A0A182H3K1   A0A023EUJ3   A0A232F0N9   A0A182JY92   A0A182SUI7   U5EN60   A0A182P5U0   Q17IL4   A0A195E2E8   A0A182QLN0   Q7Q0F7   A0A182RD26   A0A182PL02   A0A182Y1F1   D2A4M8   A0A195FYI4   A0A182MAA0   A0A0L7KT86   A0A0L7QWZ7   A0A1B0GJL0   A0A1B6JDB4   A0A0J7NFK4   A0A1Y1LJ54   A0A1L8D9V6   A0A1L8DA95   A0A182U3V5   E0W140   A0A1Q3FM23   A0A1L8DAA7   A0A1L8D9X1   A0A1Q3FMW8   A0A1Q3FN08   T1IG52   A0A0P4VPE2   A0A182KS95   R4G3L2   A0A023EQP1   V5G361   Q17IL3   A0A2S2QBU6   A0A224XBY4   R4WI11   E9I858   A0A2M4BK90   A0A2M4BJW6   T1EA71   A0A182FBB6   A0A0L0BY65   A0A2M4AQC4   A0A0K8UP11   A0A182XF02   A0A182WEW0   A0A034W330   A0A034W5S6   W5JFS7   W8B4R2   A0A084WIB3   W8BS49   A0A2H8TM79   J3JT89   N6U3U4   U4ULG7   A0A2M4BMP6   A0A1J1IH94   A0A182JB39   A0A0C9RCV0  

PDB

4R5D     E-value=1.13063e-19,     Score=239

KEGG

101737158    no KO assigned | (RefSeq) leucine-rich repeat neuronal protein 1-like

GO

GO:0016021   GO:0005634   GO:0043565   GO:0006355   GO:0005615   GO:0031012   GO:0004180   GO:0005515   GO:0003676   GO:0009451   GO:0009982   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

SignalP

Position:   1 - 24,         Likelihood:  0.930888

 

 

Length:

541

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.96449

Exp number, first 60 AAs:

0.00189

Total prob of N-in:

0.00213

outside

1  -  494

TMhelix

495  -  517

inside

518  -  541

 

 

Pi

20.457234

Theta

17.459221

Tajima's D

1.132834

CLR

0.633601

CSRT

0.706314684265787

Interpretation

Uncertain