Gene

KWMTBOMO14169  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011416

Annotation

40S_ribosomal_protein_S3a_[Bombyx_mori]

Location

Bomo_Chr23(+):19689420-19694897      View in EpiBrowser

Full name

40S ribosomal protein S3a      

Location in the cell

Cytoplasmic   Reliability : 2.723

CDS

ATGGCGGTCGGGAAAAATAAAGGCCTGTCGAAGGGCGGTAAAAAAGGTGTTAAGAAGAAGATTGTCGACCCATTCACTCGCAAAGATTGGTACGATGTCAAGGCTCCGTCTATGTTCAGCAAGAGGCAAGTCGGCACCACGCTTGTCAACCGTACCCAGGGAACGAAAATTGCTTCGGAAGGATTGAAGGGAAGAGTTTTCGAAGTTTCCCTGGCTGATCTACAAGCTGACACTGACGCGGAAAGGTCTTTCCGCAAATTCAGATTAATCGCCGAATATGTGCAAGGACGTAATGTGCTCTGCAACTTCCACGGCATGGACCTCACAACCGATAAGCTCAGGTGGATGGTTAAAAAATGGCAGACTCTCATCGAAGCCAACATTGATGTGAAGACAACCGATGGATACGTTCTACGTGTCTTCTGCATTGGTTTCACCAATAAGGACTCCTTGAGCCAACGCAAGACGTGCTACGCCCAGCACACTCAGGTCAGAGCAATCAGAAAGAAAATGTGTGAAATCATTACACGCGACGTCACTAACTCTGAACTCAGGGAGGTGGTGAACAAGTTGATTCCTGACTCCATTGCCAAGGACATCGAGAAGGCCTGCCATGGCATCTACCCTCTGCGCGATGTTTGCATCCGAAAGGTGAAAGTGTTGAAGAGGCCCCGTTTCGAGATCTCGAAGTTGATGGAACTTCACGGCGAAGGCGGTGGAGGCAAGGGGGAAGCCGGAGACAAGTCTGAACGGCCGGAGGGCTACGAGCCTCCCGTTCAAGAGAGTGTTTAA

Protein

MAVGKNKGLSKGGKKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERPEGYEPPVQESV

Subunit

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S).

Similarity

Belongs to the eukaryotic ribosomal protein eS1 family.

Keywords

Complete proteome   Cytoplasm   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S3a

Uniprot

Q64FN2   A5JSW9   A0A2H1WY38   Q95V35   D1LYN4   A0A0K8T6J9   + More
A0A2W1BKH0   A0A2A4JPX2   A0A3S2NV61   A0A2A4JP36   C7DZG4   G4XH84   A0A1E1W767   D9D841   C9E271   G0ZEH2   A0A3G1T1D4   E7DZ53   I4DM70   A0A0N1PHW3   I4DIC6   A0A212EVP9   Q95P68   A0A212ES15   R4UV62   A0A067R292   A0A2J7PM05   Q5G5C4   D2A5H6   A0A1B6GL69   A0A1B6MAY6   A0A1D1Y0N2   R4WR33   E0VPU2   A0A0X8NXV7   E2J7E4   A0A161MTG7   R4FQ35   A6YPJ8   Q6EV04   A0A0P4VV23   Q4GXU8   E2J7E3   I3VPB6   A0A1Y1JXQ5   A0A2R7WU67   D1M832   A0A069DY62   A0A336LP57   A0A240SY34   A0A1B0D2Y7   A0A1L8DSF8   U5EZM1   E2B9J4   A0A0J7KP33   T1E259   J3JWD5   E2BPR9   A0A023ELY8   Q1HRR3   E2AK98   F4WVQ8   A0A195AV54   A0A158NHJ0   C6ZQL0   A0A0N8EQC3   A0A0K8TQX6   A0A348G673   A0A026WXG1   A0A195E2G3   A0A0T6AX09   B2ZSF2   B1NEW2   A0A232EQU1   K7J202   A0A0A9WYY9   A0A2A3EKF0   V9IMG5   A0A088AD55   B0WN96   Q66UB9   A0A1W4XBP8   Q4GXQ9   A0A0N0U3J7   U5EX86   A0A2A4AQ93   A0A226E8Q2   Q56FG9   A0A1J1IBM4   T1DT34   A0A2H8TGJ8   C4WYC2   A0A195D4F5   A0A0P5L925   A0A336LJQ3   W5JP46   A0A2M3ZY90   A0A182G023   B6DDU1   A0A0P4WVJ7  

Pubmed

14668217    28756777    27251284    22651552    26354079    22118469    + More
24845553    18362917    19820115    23691247    20566863    18207082    16237206    27129103    23049752    28004739    26334808    20798317    24330624    22516182    23537049    24945155    26483478    17204158    17510324    21719571    21347285    20496585    26369729    24508170    30249741    22609975    19027836    28648823    20075255    25401762    26823975    30926861    20920257    19178717   

EMBL

AY705974    AY769317    EF565369    ODYU01011952    SOQ57990.1    AF429977    + More
GU084308    ACY95341.1    GBRD01004659    JAG61162.1    KZ149991    PZC75582.1    NWSH01000860    PCG73816.1    RSAL01000062    RVE49575.1    PCG73817.1    GQ229194    ACT21541.1    JF811439    AEP43788.1    GDQN01008260    JAT82794.1    GU945199    ADI50268.1    GQ452008    ACV83781.1    JF265050    AEL28881.1    MG846937    AXY94789.1    HQ424756    ADT80700.1    AK402388    BAM19010.1    KQ460036    KPJ18424.1    AK401044    KQ459593    BAM17666.1    KPI96408.1    AGBW02012156    OWR45559.1    AF379639    AAK59927.1    AGBW02012889    OWR44275.1    KC632317    AGM32131.1    KK852807    KDR16079.1    NEVH01024421    PNF17362.1    AY850276    KQ971345    EFA05373.1    GECZ01006594    JAS63175.1    GEBQ01006899    JAT33078.1    GDJX01019721    JAT48215.1    AK417117    BAN20332.1    DS235379    EEB15398.1    KC507301    AHB12424.1    HP429362    ADN29862.1    GEMB01000112    JAS02999.1    ACPB03021684    GAHY01000614    JAA76896.1    EF639009    AJ783867    GDKW01000004    JAI56591.1    AM048925    CAJ17219.1    HP429361    ADN29861.1    JW050198    AFK82355.1    GEZM01097816    JAV54089.1    KK855553    PTY23093.1    GU120456    ACY71306.1    GBGD01002575    JAC86314.1    UFQT01000027    SSX18157.1    AJWK01030434    AJVK01023141    GFDF01004770    JAV09314.1    GANO01000537    JAB59334.1    GL446556    EFN87627.1    LBMM01004890    KMQ92014.1    GALA01001515    JAA93337.1    APGK01055212    BT127553    KB741261    KB632254    AEE62515.1    ENN71611.1    ERL90610.1    GL449658    EFN82270.1    JXUM01005820    GAPW01003295    KQ560202    JAC10303.1    KXJ83875.1    DQ440031    CH477983    CH477364    GL440209    EFN66139.1    GL888393    EGI61728.1    KQ976737    KYM75937.1    ADTU01015840    EZ114811    ACU30864.1    GDIQ01004284    JAN90453.1    GDAI01001293    JAI16310.1    FX985615    BBF97946.1    KK107069    QOIP01000002    EZA60712.1    RLU25753.1    KQ979763    KYN19266.1    LJIG01022656    KRT79405.1    EU683898    ACD61705.1    EF444539    ABS44871.1    NNAY01002725    OXU20687.1    GBHO01031856    GBRD01016748    GDHC01020552    JAG11748.1    JAG49079.1    JAP98076.1    KZ288220    PBC32170.1    JR053804    AEY62022.1    DS232008    AY603568    AAU06483.1    AM048964    CAJ17199.1    KQ435878    KOX70024.1    GANO01001073    JAB58798.1    NWMT01000236    PCC97919.1    LNIX01000006    MH800093    OXA53241.1    QBH74251.1    AY961531    CVRI01000047    CRK97677.1    GAMD01001204    JAB00387.1    GFXV01001365    MBW13170.1    ABLF02031094    AK343119    BAH72892.1    KQ976870    KYN07721.1    GDIQ01178273    JAK73452.1    SSX18156.1    ADMH02000506    ETN66157.1    GGFK01000215    MBW33536.1    EU934301    GDIP01251035    JAI72366.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000027135    UP000235965    UP000007266    UP000009046    UP000015103    UP000092461    UP000092462    UP000008237    UP000036403    UP000019118    UP000030742    UP000069940    UP000249989    UP000008820    UP000000311    UP000007755    UP000078540    UP000005205    UP000053097    UP000279307    UP000078492    UP000215335    UP000002358    UP000242457    UP000005203    UP000002320    UP000192223    UP000053105    UP000243750    UP000198287    UP000183832    UP000007819    UP000078542    UP000000673    UP000069272   

PRIDE

Q64FN2    A5JSW9    Q95V35    Q5G5C4    A6YPJ8    Q6EV04    + More
Q1HRR3    B0WN96    Q56FG9    B6DDU1   

Pfam

PF01015   Ribosomal_S3Ae

Interpro

IPR027500   Ribosomal_S1/3_euk        + More
IPR001593   Ribosomal_S3Ae       
IPR018281   Ribosomal_S3Ae_CS       

ProteinModelPortal

Q64FN2   A5JSW9   A0A2H1WY38   Q95V35   D1LYN4   A0A0K8T6J9   + More
A0A2W1BKH0   A0A2A4JPX2   A0A3S2NV61   A0A2A4JP36   C7DZG4   G4XH84   A0A1E1W767   D9D841   C9E271   G0ZEH2   A0A3G1T1D4   E7DZ53   I4DM70   A0A0N1PHW3   I4DIC6   A0A212EVP9   Q95P68   A0A212ES15   R4UV62   A0A067R292   A0A2J7PM05   Q5G5C4   D2A5H6   A0A1B6GL69   A0A1B6MAY6   A0A1D1Y0N2   R4WR33   E0VPU2   A0A0X8NXV7   E2J7E4   A0A161MTG7   R4FQ35   A6YPJ8   Q6EV04   A0A0P4VV23   Q4GXU8   E2J7E3   I3VPB6   A0A1Y1JXQ5   A0A2R7WU67   D1M832   A0A069DY62   A0A336LP57   A0A240SY34   A0A1B0D2Y7   A0A1L8DSF8   U5EZM1   E2B9J4   A0A0J7KP33   T1E259   J3JWD5   E2BPR9   A0A023ELY8   Q1HRR3   E2AK98   F4WVQ8   A0A195AV54   A0A158NHJ0   C6ZQL0   A0A0N8EQC3   A0A0K8TQX6   A0A348G673   A0A026WXG1   A0A195E2G3   A0A0T6AX09   B2ZSF2   B1NEW2   A0A232EQU1   K7J202   A0A0A9WYY9   A0A2A3EKF0   V9IMG5   A0A088AD55   B0WN96   Q66UB9   A0A1W4XBP8   Q4GXQ9   A0A0N0U3J7   U5EX86   A0A2A4AQ93   A0A226E8Q2   Q56FG9   A0A1J1IBM4   T1DT34   A0A2H8TGJ8   C4WYC2   A0A195D4F5   A0A0P5L925   A0A336LJQ3   W5JP46   A0A2M3ZY90   A0A182G023   B6DDU1   A0A0P4WVJ7  

PDB

4V6W     E-value=2.62873e-94,     Score=879

KEGG

692713    K02984 small subunit ribosomal protein S3Ae | (RefSeq) RpS3Ae; ribosomal protein S3Ae

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0022627   GO:0006412   GO:0005840   GO:0005829   GO:0016021   GO:0005622   GO:0005488   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Subcellular location

Cytoplasm  

Length:

263

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00043

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03974

outside

1  -  263

 

 

Pi

3.008761

Theta

6.911508

Tajima's D

-1.740148

CLR

226.164413

CSRT

0.0307984600769961

Interpretation

Possibly Positive selection