Silkworm Genome Informatics Database

Gene

KWMTBOMO14162

Pre Gene Modal

BGIBMGA011413

Annotation

PREDICTED:_transcription_factor_SUM-1_[Bombyx_mori]

Location

Bomo_Chr23(+):19557390-19572082 View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear Reliability : 3.274

CDS

ATGAACTACACGTACGAAGAATACAGGAAAAACGAAGGACAGTGTTGCCAAGTTAAAAAAGAAAGTAAAAACGTGGATAATTTTGAAAGTGAAGAGCACGTTCAACACGTGCTGGGTCCGAGCCGGAGATGCCTCGCGTGGGCCTGCAAGGCTTGTAAGAGGAAAACTGCCGCTGTCGACAGACGAAAAGCGGCCACATTACGTGAAAGAAGACGACTTAGAAAAGTTAACGCGGCATTTGAGGAGCTCAGGGTCAGAGCGCGCGCTGGAAGCGGCCGCCTCCCGAAGCTGGAGATCCTCAGAGCAGCGATACAGCATATAGAACGGTTACAGGCAGCGTTAAGGGCCGCCGCAGTGCTAGAGTCGGAGAAGTGTAAAGGCTATTTAGAATCACCAGTGAACGTCGTAAGGACACAGTACGAAGCTAAGGAGGCGAAGGCGGAAAAGGAGAGGCCGTTTTTAAGTGGAGACAGCAGCAGCTGTGGTGTTAACAGTTTGGCGAGACTTCGTTGTATAGTTCAGGCTCTGTCTAAAGAAATTAATTAG

Protein

MNYTYEEYRKNEGQCCQVKKESKNVDNFESEEHVQHVLGPSRRCLAWACKACKRKTAAVDRRKAATLRERRRLRKVNAAFEELRVRARAGSGRLPKLEILRAAIQHIERLQAALRAAAVLESEKCKGYLESPVNVVRTQYEAKEAKAEKERPFLSGDSSSCGVNSLARLRCIVQALSKEIN

Uniprot

A0A3S2M994 A0A212F6N8 E2BYH1 A0A026WLT3 A0A3L8DJE9 A0A158NRZ8 + More
A0A195BPU0 A0A195D839

Pubmed

22118469 20798317 24508170 30249741 21347285

EMBL

RSAL01000005 RVE54424.1 AGBW02009985 OWR49400.1 GL451478 EFN79255.1 + More
KK107152 EZA57005.1 QOIP01000007 RLU20293.1 ADTU01024371 ADTU01024372 ADTU01024373 ADTU01024374 ADTU01024375 ADTU01024376 ADTU01024377 ADTU01024378 KQ976424 KYM88537.1 KQ981153 KYN09038.1

Proteomes

UP000283053 UP000007151 UP000008237 UP000053097 UP000279307 UP000005205 + More
UP000078540 UP000078492

Pfam

PF01586 Basic + More
PF00010 HLH

Interpro

IPR011598   bHLH_dom        + More
IPR039704   Myogenic_factor
IPR002546   Basic
IPR036638   HLH_DNA-bd_sf

SUPFAM

SSF47459 SSF47459

Gene 3D

4.10.280.10

CDD

cd00083 HLH

ProteinModelPortal

A0A3S2M994 A0A212F6N8 E2BYH1 A0A026WLT3 A0A3L8DJE9 A0A158NRZ8 + More
A0A195BPU0 A0A195D839

KEGG

101743515 K18484 myogenic factor 5 | (RefSeq) transcription factor SUM-1

GO

GO:0007517 GO:0006355 GO:0046983 GO:0005581 GO:0003677 GO:0005634 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

PANTHER

PTHR11534

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.49790

outside

1 - 181

Pi

13.234817

Theta

16.302431

Tajima's D

-1.202727

CLR

13.347491

CSRT

0.100544972751362

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics