Silkworm Genome Informatics Database

Gene

KWMTBOMO14153 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011181

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_coiled-coil_domain-containing_protein_51-like_[Bombyx_mori]

Location

Bomo_Chr23(-):19390402-19403225 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.321

CDS

ATGGCAGACCGCCTCCGTATAATCGCGCAGCGACTAAAGGACAAAATAAACTTAGCGCAATTGAATGTAACGAATCGCGAAAAGGTCGATCAACTTATTACCAAATACGTACCGGCTACGAAAGTTTCGGAAGTAGCGGAGAGATTTAAATACGATAATTTAACTAAAAAAGTACAAGATTTAGTCACCAAATATGAAAAATTCACGGGAGTCGAAGAAATTATGGCGATACAAAACACGGTGATCGACGCGCAGGACAAATTCATTGCTGCCCAAGATCGCCGTCGTGATGTTGGTCGTCAGTTAGCCAACATAGAATCTAGACTGAAAGAATTACATGCTGAAATGCAAAATACTATGAAGGGGGATGAGAAATACTTGCAGCTCTGCACTGAAGAGCACAAGCTTATAATACAAGAACGTGCCCTGCGGACCCTCTTCGCCGATGCCGAGAAGGAAGAACGCGAGTTGTTCGCCACGATGTCGGCCGCCGTGAAGCTGGGCCACGAGAGGGAGAGGGCGCACGCGGAACGCAACAAGTATTGGTACATCGTTGCCTCGATTTTTGGCACGGTGCTCGGTATAGCCGGTTCGACGATAAACAATCACCTGAAGATGGCCGAGTTCAGGGACATGATGGAGCAGCAGATGGCCAGGAGCGCGAGCGTCCTGTACACCATCGCGGGGGGCGGGACCGCCAGCCGGGCCGACATCACGGAGGCGATGAAGACCGAGTTCGCTTACCAGGAACAATTAGCCCAAAATTTGAAGTTGATGCAGGAGAATATAAATCATCTTGTCAACAAGCAAAGTTCCCTTATCGAACACATGCACAATCAGGAGCATTTAGTCGAAACTCAAATGAAGGATCTCAAACGATTGATAATCACCGCCTCGCAGTCGAGCGCCAAGTCGGACGCGGAAATAGCGAAGGCCCTCTCAGTCGTGCACCAAGATCTCGACGAGGCTGACAAGGACCGCGACCTGGAACCGGCCAAGGTGTCGCTGGAGCCAAATCAAATCCTAACCGGCATCGGCATAATAGTGTGCTTCGCGATAATATTCGGCAACATTCTGGGCAGAGTCAGTTGA

Protein

MADRLRIIAQRLKDKINLAQLNVTNREKVDQLITKYVPATKVSEVAERFKYDNLTKKVQDLVTKYEKFTGVEEIMAIQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQERALRTLFADAEKEERELFATMSAAVKLGHERERAHAERNKYWYIVASIFGTVLGIAGSTINNHLKMAEFRDMMEQQMARSASVLYTIAGGGTASRADITEAMKTEFAYQEQLAQNLKLMQENINHLVNKQSSLIEHMHNQEHLVETQMKDLKRLIITASQSSAKSDAEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQILTGIGIIVCFAIIFGNILGRVS

Uniprot

A0A194PTX7 A0A0N0PDY4 A0A3S2NRE0 A0A2A4J358 A0A2H1VTB9 A0A212EWY5 + More
S4PBQ8 A0A2R7W615 A0A131YVK5 A0A1Z5LE66 A0A0N4U554 T1IJL4 A0A2G5U2Y0 A0A0D6M144 A0A2C9JX49 A0A183IDG7 A0A0P7XU75

Pubmed

26354079 22118469 23622113 26830274 28528879 15562597 + More

EMBL

KQ459593 KPI96428.1 KQ460036 KPJ18405.1 RSAL01000005 RVE54415.1 + More
NWSH01003727 PCG65880.1 ODYU01004161 SOQ43732.1 AGBW02011905 OWR45944.1 GAIX01004491 JAA88069.1 KK854374 PTY15177.1 GEDV01005308 JAP83249.1 GFJQ02001325 JAW05645.1 UYYG01001155 VDN56346.1 JH430315 PDUG01000004 PIC33892.1 KE124828 EPB77774.1 UZAM01006903 VDO95070.1 JARO02000360 KPP78852.1

Proteomes

UP000053268 UP000053240 UP000283053 UP000218220 UP000007151 UP000038040 + More
UP000274756 UP000230233 UP000076420 UP000050793 UP000034805

Pfam

PF05546 She9_MDM33

Interpro

IPR037660 CCDC51 + More
IPR008839 MDM33_fungi

ProteinModelPortal

A0A194PTX7 A0A0N0PDY4 A0A3S2NRE0 A0A2A4J358 A0A2H1VTB9 A0A212EWY5 + More
S4PBQ8 A0A2R7W615 A0A131YVK5 A0A1Z5LE66 A0A0N4U554 T1IJL4 A0A2G5U2Y0 A0A0D6M144 A0A2C9JX49 A0A183IDG7 A0A0P7XU75

KEGG

101742949 no KO assigned | (RefSeq) coiled-coil domain-containing protein 51-like

GO

GO:0016021

PANTHER

PTHR28624

Length:

363

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

42.1659

Exp number, first 60 AAs:

0

Total prob of N-in:

0.95141

inside

1 - 180

TMhelix

181 - 200

outside

201 - 340

TMhelix

341 - 360

inside

361 - 363

Pi

4.305377

Theta

14.219048

Tajima's D

-1.41335

CLR

23.301862

CSRT

0.0699465026748663

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics