Gene

KWMTBOMO14152

Pre Gene Modal

BGIBMGA011184

Annotation

PREDICTED:_HMG_box-containing_protein_4_[Papilio_xuthus]

Location

Bomo_Chr23(-):19381627-19383085      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.431

CDS

ATGCAGGAAGATTTAGAAGTCACCGGTATATCGAGGAGTGGTCGGGTTAGAAAGAAGAGTTCCAAGCTAATGGACTTTGAGTCGCCCGACGATATCGAGACTAGGTTCAGGCGCCAGACACCCGTCAAGACATACACCACAAGTCGTCAGGAGGAACCTGACTACAGTATCCAGGAAACACCTCAGAGGCCGGTCGAGGAGGTGAACACTGCATCGGGAAGCGAATCTGATTATTATGAGAATAATGCTGAAAACGCTGATAGCTTGGAATCAGACAGTTCGGCTTCTGAAGAGGGATCGGCCCGTACTCCGGCTAACTCATTGTACATGATGGAGAAGAATAGTAAGAAGAAGCTAATTGTGAAGGATGGCCGAGTCATTGGCAGGGCTAAAGCTCAGCGAAAAGATAAAGGTATCTTTTTTCCCCCACCTAATCATTGGTAG

Protein

MQEDLEVTGISRSGRVRKKSSKLMDFESPDDIETRFRRQTPVKTYTTSRQEEPDYSIQETPQRPVEEVNTASGSESDYYENNAENADSLESDSSASEEGSARTPANSLYMMEKNSKKKLIVKDGRVIGRAKAQRKDKGIFFPPPNHW

Uniprot

H9JNT0   A0A3S2LI88   A0A2A4J2H0   A0A212EWT2   A0A2H1WFF9   A0A2A4J1Z2   + More
A0A194PSY7   A0A0N0PE91   A0A0L7KUW0   A0A1E1WK46   S4PE25   A0A1E1WNC9   A0A2W1B8M7   A0A1Y1KPT4   A0A1Y1KHC9   A0A1B6CAF5   A0A1B6C8Y7   A0A146L8U0   A0A146M4I7   A0A146LMY1   A0A0M8ZQT5   A0A146M0P8   A0A026WDX5   A0A087ZSU0   A0A1B6LMQ3   A0A3R7P4H6   A0A0C9RJ68   A0A336MD36   A0A336MT02   A0A1B0CR62   B4R5X8   B4IHK0   A0A1L8DCD7   A0A1W4VIP5   A0A182G125   B3NTN4   B4Q145   U5ETJ6   A0A224XCH9  

Pubmed

19121390    22118469    26354079    26227816    23622113    28756777    + More
28004739    26823975    24508170    17994087    26483478    17550304   

EMBL

BABH01010012    RSAL01000005    RVE54414.1    NWSH01003727    PCG65878.1    AGBW02011905    + More
OWR45945.1    ODYU01008325    SOQ51818.1    PCG65879.1    KQ459593    KPI96427.1    KQ460036    KPJ18406.1    JTDY01005518    KOB66920.1    GDQN01003664    JAT87390.1    GAIX01003371    JAA89189.1    GDQN01002698    JAT88356.1    KZ150269    PZC71688.1    GEZM01083986    JAV60877.1    GEZM01083985    JAV60879.1    GEDC01026832    JAS10466.1    GEDC01027573    JAS09725.1    GDHC01014470    JAQ04159.1    GDHC01003935    JAQ14694.1    GDHC01010582    JAQ08047.1    KQ435903    KOX69057.1    GDHC01006183    JAQ12446.1    KK107263    EZA53886.1    GEBQ01015118    JAT24859.1    QCYY01001803    ROT75196.1    GBYB01006956    JAG76723.1    UFQS01000733    UFQT01000733    SSX06470.1    SSX26819.1    UFQT01002491    SSX33572.1    AJWK01024422    CM000366    EDX17314.1    CH480839    EDW49351.1    GFDF01009968    JAV04116.1    JXUM01038043    KQ561151    KXJ79551.1    CH954180    EDV47447.1    CM000162    EDX02400.1    GANO01004341    JAB55530.1    GFTR01006301    JAW10125.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    + More
UP000037510    UP000053105    UP000053097    UP000005203    UP000283509    UP000092461    UP000000304    UP000001292    UP000192221    UP000069940    UP000249989    UP000008711    UP000002282   

PRIDE

H9JNT0   

Pfam

PF00505   HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9JNT0   A0A3S2LI88   A0A2A4J2H0   A0A212EWT2   A0A2H1WFF9   A0A2A4J1Z2   + More
A0A194PSY7   A0A0N0PE91   A0A0L7KUW0   A0A1E1WK46   S4PE25   A0A1E1WNC9   A0A2W1B8M7   A0A1Y1KPT4   A0A1Y1KHC9   A0A1B6CAF5   A0A1B6C8Y7   A0A146L8U0   A0A146M4I7   A0A146LMY1   A0A0M8ZQT5   A0A146M0P8   A0A026WDX5   A0A087ZSU0   A0A1B6LMQ3   A0A3R7P4H6   A0A0C9RJ68   A0A336MD36   A0A336MT02   A0A1B0CR62   B4R5X8   B4IHK0   A0A1L8DCD7   A0A1W4VIP5   A0A182G125   B3NTN4   B4Q145   U5ETJ6   A0A224XCH9  

KEGG

101742803    K11298 high mobility group protein 2-like 1 | (RefSeq) HMG box-containing protein 4

GO

GO:0005634   GO:0003677  

Length:

147

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08879

outside

1  -  147

 

 

Pi

12.422558

Theta

21.048804

Tajima's D

-1.397307

CLR

16.074753

CSRT

0.0697965101744913

Interpretation

Uncertain