Gene

KWMTBOMO14151

Pre Gene Modal

BGIBMGA011184

Annotation

HMG_box-containing_protein_4_[Papilio_xuthus]

Location

Bomo_Chr23(-):19374936-19380465      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.343 Nuclear   Reliability : 1.426 PlasmaMembrane   Reliability : 1.046

CDS

ATGGATTTCTCGGCTATATCAAAACGACTTGGAGAAATGTGGTCTAATGTGAATTACAACGAGAGATACTTGTGGAAGCGCAAAGCCAAGAGATTCGCCATACAGAAGGAGCAAAACAATCAAGTTATCAACAAAATCATATCCAATCCGAGTGTGAGGCCGGCGAACCCCGGGCCGGGCCGTCCATCCGTCGGGCGCCCCCCGCGCACCCCCGCCGCCGCACCCCCCGCACCCCCCCAGCTCGCCATCACGGCCTCATCGTCGTGTAGCACCGCGGCCCTTTACCGCGTGACGGGCTGCGCGCCGGTCGACGTGGCGGCCCACCTCCGGCTGCTGGGGGAGAGCCTCGCCATCATCGGCGCCAGGCTCAAGGAGCACGAGGGTCAGATCGCGGTGTCGGGCTCGGTGTCGGTGTTGCTGGACACGCTGGTGTGCGCGCTGGGTCCGCTGGCGGCGCTGACCCGCGCGCTGCCCGGCGTGGCGCCGCCGCCCGCGCTGCTGCAGGACACGCTGCACAACATCGCCTACATCATGCCGGGACTCTAA

Protein

MDFSAISKRLGEMWSNVNYNERYLWKRKAKRFAIQKEQNNQVINKIISNPSVRPANPGPGRPSVGRPPRTPAAAPPAPPQLAITASSSCSTAALYRVTGCAPVDVAAHLRLLGESLAIIGARLKEHEGQIAVSGSVSVLLDTLVCALGPLAALTRALPGVAPPPALLQDTLHNIAYIMPGL

Uniprot

H9JNT0   S4PE25   A0A2H1WFF9   A0A194PSY7   A0A3S2LI88   A0A0N0PE91   + More
A0A212EWT2   A0A2W1B8M7   A0A2A4J2H0   A0A2A4J1Z2   A0A2W1CJM2   A0A026WDX5   A0A3L8DAN4   E0VMN4   A0A151X2R1   E2B6Y9   A0A195C275   A0A195FAE4   F4W8C5   A0A158NN51   A0A195BB13   A0A0C9RJ68   A0A1S3HQ27   A0A151IWH6   A0A1S3HQ11   A0A310SKG4   A0A224Z9A7   A0A131Z6A0   A0A0K2V371   A0A0L7RAC3   A0A087ZSU0   E1ZVS9   A0A0M8ZQT5   F6SBP9   U6D8T3   Q8BTT5   Q8R579   A0A1B0DJN6   A0A093F0B8   B7PWX2   A0A1Y1KPT4   G5BPE8   A0A287AA84   A0A384DA44   A0A3Q7WMT2   A0A2I3RR71   Q2M3X1   G3RED4   A0A2U3YPJ8   A0A2K6R9B9   A0A2K6MXQ7   A0A1U7T2V9   H0XJD0   A0A341B8P2   A0A2K5VSA1   A0A1D5RBW8   A0A2K5M0A2   A0A1S3APQ3   A0A2K5RTV1   A0A2U3X2E4   A0A340X4T3   A0A2U3ZYP6   A0A2Y9QDD0   A0A2Y9KUL2   J9P2L5   A0A2I3HV99   K7J662   A0A2K5XM71   A0A2K6GJQ2   A0A383YSN1   A0A3Q7U006   A0A3Q7PVV2   A0A232ESS4   A0A2Y9F4M4   A6QQT0   A0A2I0MK85   R7VYC0   F7FWR3   A0A2D4KJ58   H0V737   G3TNW6   A0A2U3V6A9   A0A2Y9QD44   A0A1U7T087   G3TS17   G1RVI3   A0A2K5E6S5   I3LUS6   A0A2K5VS78   A0A0D9R791  

Pubmed

19121390    23622113    26354079    22118469    28756777    24508170    + More
30249741    20566863    20798317    21719571    21347285    28797301    26830274    10349636    11042159    11076861    11217851    12466851    16141073    19468303    21183079    15489334    28004739    21993625    15164055    16136131    11181995    22398555    25362486    17431167    16341006    20075255    28648823    19393038    23371554    17495919    21993624    30723633   

EMBL

BABH01010012    GAIX01003371    JAA89189.1    ODYU01008325    SOQ51818.1    KQ459593    + More
KPI96427.1    RSAL01000005    RVE54414.1    KQ460036    KPJ18406.1    AGBW02011905    OWR45945.1    KZ150269    PZC71688.1    NWSH01003727    PCG65878.1    PCG65879.1    NHMN01024350    PZC87408.1    KK107263    EZA53886.1    QOIP01000011    RLU16929.1    DS235317    EEB14640.1    KQ982579    KYQ54542.1    GL446071    EFN88531.1    KQ978344    KYM94927.1    KQ981693    KYN37595.1    GL887908    EGI69416.1    ADTU01021054    KQ976537    KYM81422.1    GBYB01006956    JAG76723.1    KQ980854    KYN12175.1    KQ765330    OAD53967.1    GFPF01011996    MAA23142.1    GEDV01002235    JAP86322.1    HACA01027221    CDW44582.1    KQ414619    KOC67701.1    GL434631    EFN74713.1    KQ435903    KOX69057.1    HAAF01006489    CCP78313.1    AL603864    AK088758    BAC40551.1    BC023167    AAH23167.1    AJVK01065597    KL474485    KFV20096.1    ABJB010711167    DS810815    EEC11094.1    GEZM01083986    JAV60877.1    JH171263    EHB11159.1    AACZ04068063    BC104754    BC104756    CH471095    AAI04757.1    EAW60048.1    CABD030120949    AAQR03016452    AAQR03016453    AAQR03016454    AAQR03016455    AAQR03016456    AQIA01007142    AQIA01007143    AQIA01007144    AQIA01007145    JSUE03005405    JSUE03005406    AAEX03007363    ADFV01024159    ADFV01024160    ADFV01024161    NNAY01002380    OXU21410.1    BC149980    AAI49981.1    AKCR02000008    PKK30091.1    KB375382    EMC90062.1    IACL01074728    LAB08714.1    AAKN02054146    DQIR01236488    HDB91965.1    AQIB01136703    AQIB01136704    AQIB01136705    AQIB01136706   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000007151    UP000218220    + More
UP000053097    UP000279307    UP000009046    UP000075809    UP000008237    UP000078542    UP000078541    UP000007755    UP000005205    UP000078540    UP000085678    UP000078492    UP000053825    UP000005203    UP000000311    UP000053105    UP000008225    UP000000589    UP000092462    UP000001555    UP000006813    UP000008227    UP000261680    UP000286642    UP000002277    UP000001519    UP000245341    UP000233200    UP000233180    UP000189704    UP000005225    UP000252040    UP000233100    UP000006718    UP000233060    UP000079721    UP000233040    UP000245340    UP000265300    UP000245320    UP000248483    UP000248482    UP000002254    UP000001073    UP000002358    UP000233140    UP000233160    UP000261681    UP000286640    UP000286641    UP000215335    UP000248484    UP000009136    UP000053872    UP000002280    UP000005447    UP000007646    UP000233020    UP000029965   

PRIDE

H9JNT0   

Pfam

PF00505   HMG_box        + More
PF13775   DUF4171

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR025228   DUF4171       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9JNT0   S4PE25   A0A2H1WFF9   A0A194PSY7   A0A3S2LI88   A0A0N0PE91   + More
A0A212EWT2   A0A2W1B8M7   A0A2A4J2H0   A0A2A4J1Z2   A0A2W1CJM2   A0A026WDX5   A0A3L8DAN4   E0VMN4   A0A151X2R1   E2B6Y9   A0A195C275   A0A195FAE4   F4W8C5   A0A158NN51   A0A195BB13   A0A0C9RJ68   A0A1S3HQ27   A0A151IWH6   A0A1S3HQ11   A0A310SKG4   A0A224Z9A7   A0A131Z6A0   A0A0K2V371   A0A0L7RAC3   A0A087ZSU0   E1ZVS9   A0A0M8ZQT5   F6SBP9   U6D8T3   Q8BTT5   Q8R579   A0A1B0DJN6   A0A093F0B8   B7PWX2   A0A1Y1KPT4   G5BPE8   A0A287AA84   A0A384DA44   A0A3Q7WMT2   A0A2I3RR71   Q2M3X1   G3RED4   A0A2U3YPJ8   A0A2K6R9B9   A0A2K6MXQ7   A0A1U7T2V9   H0XJD0   A0A341B8P2   A0A2K5VSA1   A0A1D5RBW8   A0A2K5M0A2   A0A1S3APQ3   A0A2K5RTV1   A0A2U3X2E4   A0A340X4T3   A0A2U3ZYP6   A0A2Y9QDD0   A0A2Y9KUL2   J9P2L5   A0A2I3HV99   K7J662   A0A2K5XM71   A0A2K6GJQ2   A0A383YSN1   A0A3Q7U006   A0A3Q7PVV2   A0A232ESS4   A0A2Y9F4M4   A6QQT0   A0A2I0MK85   R7VYC0   F7FWR3   A0A2D4KJ58   H0V737   G3TNW6   A0A2U3V6A9   A0A2Y9QD44   A0A1U7T087   G3TS17   G1RVI3   A0A2K5E6S5   I3LUS6   A0A2K5VS78   A0A0D9R791  

KEGG

101742803    K11298 high mobility group protein 2-like 1 | (RefSeq) HMG box-containing protein 4

GO

GO:0005634   GO:0003677   GO:0016589  

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.53757

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14638

outside

1  -  181

 

 

Pi

12.89664

Theta

21.746115

Tajima's D

-1.41937

CLR

17.440547

CSRT

0.0677966101694915

Interpretation

Uncertain