SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14146  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011186
Annotation
PREDICTED:_sorting_nexin-6_isoform_X3_[Bombyx_mori]
Full name
Sorting nexin      
Location in the cell
Cytoplasmic   Reliability : 1.613 Nuclear   Reliability : 1.91
 

Sequence

CDS
ATGATGGACTGTGTGGAAGATTCATCGCAGGACCCTTTGTCAACTGTTCCAGTGGCTGATCCAGCCCCAGCTACCATGGACACAAAAGTCGAGAAAAAGAAGCCAAATGAGAATGTCTCTCTAGCTGATAATAGTCTTCTGGTAGACATATCAGATGCTCTAAGCGAAAAAGAAAAAGTCAAGTTCACTGTTCACACCAAAACAACTTTACCGGAGTTCCAAAAATCAGAGTTCATAGTAGTACGTCAGCATGAAGAGTTTGTCTGGCTACATGACCGTTATGAAGAGAATGAAGAATATGCTGGTTATATAATCCCTCCAGCACCTCCTCGTCCTGATTTCGATGCCTCCCGCGAGAAGCTACAGCGACTGGGCGAGGGGGAAGGAGCCCTCACTAGAGAAGAGTTCCTCAAGATGAAGGAGGAGTTGGAAGACGAGTACCTGGCGACCTTTAAGAAGACGGTGGCGATGCACGAAGTATTCCTCCAGCGCCTGGCTGCTCATCCTGTCTTCCGCAGGGATTCTCATCTCAGGGTATTCCTGGAGTACGAACAGGATCTCTGTGCCAAGCCAAGAGGCAAGATGGACCTCATTGGTGGACTGGTTCGGTCAATGACAACAACCACTGATGAGATATACCTCGGGGCGACCGTGCGAGACGTGAACGACTTCTTCGAGCAGGAGACGTCGTTTCTGCAAGAATACTACTCGCACCTCAAGGAGGCAGTCGCTAAAGTCGACCGTATGACGTCGAAGCACAAAGAAGTGGCGGACGCTCACATCAAGCTGTCGTCTTGCATAACTCAGCTCGCGACCAGAGAGCAGCCTCCCATGGAGAGGTTCCTCACGAAGGCCTCCGAGACATTTGACAAGTGCCGGAAAATCGAGGGTCGCATGGCGTCCGACCAGGACCTGAAGCTGGCGGACACTCTCCGGTACTACATGAGAGACGCTCACGCAGCGAAAGCGGTGCTCGTGAGGAGACTCAGGTGTCTAGCTGCCTACGAAGCAGCCAACAGGAACTTGGAGAAGGCGAGAGCGAAGAATAAAGATGTTCACGCTGCCGAACAAGGTCAGGCGGAGGCGTGCGCTAAATTCGAGCAGCTGTCCGCGAGGGCCAGGGAGGAGCTCATCGACTTCAGGACCAGACGGGTGGCCGCCTTCAGGAAAAGCCTTATAGAACTAGCGGAATTGGAGATAAAGCACGCGAGGTCACAGCAGGAGTTGTTTAGGAAATCACTTCAAGTGCTTAGGGAGTGTCAGTGA
Protein
MMDCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQPPMERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMRDAHAAKAVLVRRLRCLAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIELAELEIKHARSQQELFRKSLQVLRECQ

Summary

Description
Involved in several stages of intracellular trafficking.
Similarity
Belongs to the sorting nexin family.
EMBL
BABH01009997    BABH01009998    BABH01009999    NWSH01002863    PCG67421.1    KQ460036    + More
KPJ18411.1    PCG67422.1    GDQN01003797    GDQN01001359    JAT87257.1    JAT89695.1    AGBW02013212    OWR43861.1    KQ459593    KPI96422.1    GFDL01010551    JAV24494.1    GFDL01010507    JAV24538.1    GFDF01000980    JAV13104.1    APCN01005391    GFDF01000987    JAV13097.1    AAAB01008898    EAA09144.3    GFDF01000986    JAV13098.1    GFDL01010112    JAV24933.1    AXCM01001884    JXUM01021994    KQ560617    KXJ81601.1    CH477281    EAT44912.1    ATLV01021997    KE525327    KFB47055.1    JXUM01078772    JXUM01078773    KQ563087    KXJ74503.1    KQ434849    KZC08493.1    KQ414637    KOC66978.1    AJWK01005424    AJWK01005425    GL448143    EFN85247.1    KQ766607    OAD53613.1    KQ981153    KYN08902.1    GL887888    EGI69679.1    KQ976424    KYM88410.1    UFQT01000752    SSX26975.1    GGFK01005895    MBW39216.1    GL440368    EFN65983.1    KQ978251    KYM95996.1    LBMM01000070    KMR05083.1    KQ981906    KYN33244.1    GECZ01029064    GECZ01026862    GECZ01006239    GECZ01001712    GECZ01000760    JAS40705.1    JAS42907.1    JAS63530.1    JAS68057.1    JAS69009.1    GL768123    EFZ12082.1    KK107371    EZA51825.1    GAPW01001516    JAC12082.1    GECU01032381    JAS75325.1    JR041408    AEY59436.1    GGFJ01005577    MBW54718.1    GGFM01003161    MBW23912.1    KQ435694    KOX80920.1    SSX26974.1    ADTU01012934    GBYB01006468    JAG76235.1    NEVH01017441    PNF24582.1    CVRI01000021    CRK91685.1    GEBQ01019734    JAT20243.1    DS231898    EDS44609.1    GBYB01006467    JAG76234.1    QOIP01000002    RLU26130.1    KQ982548    KYQ55212.1    CM002910    KMY88986.1    CM000157    EDW88476.1    CH480818    EDW52100.1    GAMC01011282    GAMC01011281    JAB95273.1    AE014134    AY069492    AAF52625.2    AAL39637.1    ADMH02002125    ETN58702.1    CH954177    EDV59322.1    GDKW01000608    JAI55987.1    ACPB03002617    KQ971312    EEZ98053.1    GEZM01033083    JAV84423.1    GFTR01005950    JAW10476.1    CH933807    EDW11175.1    CH963857    EDW75851.2    GBGD01001660    JAC87229.1    CH940649    EDW64096.2    KZ288253    PBC30936.1    OUUW01000004    SPP79785.1    PNF24581.1    CP012523    ALC38200.1    CH379060    EAL33670.1    NNAY01000183    OXU30214.1    GBHO01044042    GBRD01017455    GDHC01019589    JAF99561.1    JAG48372.1    JAP99039.1    KK852561    KDR21339.1    KMY88987.1    AFH03613.1    GECL01002747    JAP03377.1    KRJ97836.1    KQS70752.1    GAMC01011284    GAMC01011283    JAB95272.1   
Pfam
PF00787   PX        + More
PF09325   Vps5
Interpro
IPR015404   Vps5_C        + More
IPR001683   Phox       
IPR027267   AH/BAR_dom_sf       
IPR036871   PX_dom_sf       
IPR014637   SNX5/SNX6/SNX32       
SUPFAM
SSF103657   SSF103657        + More
SSF64268   SSF64268       
Gene 3D
PDB
6E8R     E-value=1.64375e-54,     Score=538

Ontologies

Topology

Length:
421
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00905
outside
1  -  421
 
 

Population Genetic Test Statistics

Pi
20.347985
Theta
20.594456
Tajima's D
-1.110404
CLR
26.953514
CSRT
0.11954402279886
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
31250652 YILYGSSNIVTGETK 100.00 5e-11
26822097 DIAPAVSVIQIFCSSSK 100.00 0.001
26280517 NIQSIAEER 100.00 0.001
28467696 NKDQVINSVGAICK 100.00 0.001
26822097 SEFIVVR 100.00 0.001
28556443 IVLPEMVK 100.00 0.001
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