Gene

KWMTBOMO14126

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):18340142-18341863      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.198 Mitochondrial   Reliability : 1.869

CDS

ATGTTGTATCTCTCAGGTCCCCGACTGATGGCGGCTGCCGGGTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACTTGGTGGTGCGCCGCCTCTACACGGGGGTGGTGCGGTCGATGGCACTGTACGGGGCTCCCGTGTGGTGCCACGCCCTGACCCGCGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTTGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGCGCGGCGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGAATGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACACAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGTGGAGCACACGCTCGCGTACTGCACCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGAGCCGGGGTTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MLYLSGPRLMAAAGSLSRLLPNVGGPDLVVRRLYTGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSEWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTVEHTLAYCTAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRRRAGVRRRAFVQLQPL

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7N1D9   A0A2W1C3J5   A0A0J7N7H9   O01419   A0A0J7MZM4   A0A0J7MY07   A0A0J7KCQ3   A0A0J7KIY3   A0A2H1WNZ5   A0A0L7R7C3   A0A0J7KIY5   E2BVR6   A0A194R5D3   A0A0J7KS67   A0A0J7N7S8   A0A0J7NEG9   A0A0J7KIW1   A0A0J7KJH4   A0A0J7JXN3   A0A0J7KJG6   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KM81   A0A0J7KQK3   A0A0J7KLT9   A0A0J7KIM6   J9KLZ3   A0A0J7KYD2   A0A3L8DDV9   A0A2S2P6S8   A0A0J7MX22   A0A3L8D2G3   A0A0J7KFG9   A0A0J7KPR0   A0A2S2P488   A0A0J7K3R6   A0A0J7KF37   A0A2S2NME4   A0A0J7KWU5   A0A0J7KL06   A0A0J7NAV8   A0A3L8DIL1   A0A2S2NPF9   A0A2H8TR36   J9KJG8   A0A2S2PJ67   A0A0J7KMU1   J9KV04   V5I8F3   X1WJY4   A0A0J7KPZ3   Q868S6   A0A0J7K3F1   J9LJ80   A0A2S2QUS9   A0A2S2PEZ7   A0A0Q9WRU0   J9LAC1   J9LDW8   A0A0J7K840   A0A0J7KJ07   A0A0J7NMN5   A0A2S2PYG9   A0A2S2NJ82  

Pubmed

12644555    28756777    9092665    20798317    26354079    30249741    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
KZ150308    PZC71477.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    LBMM01008861    KMQ88580.1    D85594    BAA19776.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01014132    KMQ85305.1    LBMM01009494    KMQ88097.1    LBMM01006909    KMQ90209.1    ODYU01009945    SOQ54696.1    KQ414641    KOC66782.1    LBMM01006954    KMQ90166.1    GL450953    EFN80213.1    KQ460685    KPJ12887.1    LBMM01003679    KMQ93242.1    LBMM01008682    KMQ88705.1    LBMM01006110    KMQ90925.1    LBMM01006725    KMQ90373.1    LBMM01006657    KMQ90417.1    LBMM01024024    KMQ82631.1    LBMM01006671    KMQ90407.1    LBMM01019838    KMQ83439.1    LBMM01019839    KMQ83438.1    LBMM01005634    KMQ91349.1    LBMM01004272    KMQ92618.1    LBMM01005733    KMQ91252.1    LBMM01007036    KMQ90099.1    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01002052    KMQ95336.1    QOIP01000010    RLU18098.1    GGMR01012534    MBY25153.1    LBMM01014909    KMQ85000.1    QOIP01000031    RLU14697.1    LBMM01008349    KMQ88951.1    LBMM01004634    KMQ92224.1    GGMR01011682    MBY24301.1    LBMM01015018    KMQ84954.1    LBMM01008448    KMQ88867.1    GGMR01005740    MBY18359.1    LBMM01002480    KMQ94776.1    LBMM01006063    KMQ90967.1    LBMM01007425    KMQ89740.1    QOIP01000007    RLU20280.1    GGMR01006442    MBY19061.1    GFXV01003903    MBW15708.1    ABLF02041886    GGMR01016864    MBY29483.1    LBMM01005216    KMQ91703.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    GALX01004785    JAB63681.1    ABLF02011238    LBMM01004505    KMQ92346.1    AB090814    BAC57904.1    LBMM01015025    KMQ84953.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    GGMS01012210    MBY81413.1    GGMR01015159    MBY27778.1    CH963857    KRF98317.1    ABLF02017307    ABLF02016435    ABLF02016436    ABLF02064751    LBMM01011877    KMQ86578.1    LBMM01006662    KMQ90413.1    LBMM01003245    KMQ93755.1    GGMS01001211    MBY70414.1    GGMR01004600    MBY17219.1   

Proteomes

UP000283053    UP000036403    UP000053825    UP000008237    UP000053240    UP000007819    + More
UP000279307    UP000007798   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07776   zf-AD
PF00096   zf-C2H2
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7N1D9   A0A2W1C3J5   A0A0J7N7H9   O01419   A0A0J7MZM4   A0A0J7MY07   A0A0J7KCQ3   A0A0J7KIY3   A0A2H1WNZ5   A0A0L7R7C3   A0A0J7KIY5   E2BVR6   A0A194R5D3   A0A0J7KS67   A0A0J7N7S8   A0A0J7NEG9   A0A0J7KIW1   A0A0J7KJH4   A0A0J7JXN3   A0A0J7KJG6   A0A0J7JZF7   A0A0J7JZ13   A0A0J7KM81   A0A0J7KQK3   A0A0J7KLT9   A0A0J7KIM6   J9KLZ3   A0A0J7KYD2   A0A3L8DDV9   A0A2S2P6S8   A0A0J7MX22   A0A3L8D2G3   A0A0J7KFG9   A0A0J7KPR0   A0A2S2P488   A0A0J7K3R6   A0A0J7KF37   A0A2S2NME4   A0A0J7KWU5   A0A0J7KL06   A0A0J7NAV8   A0A3L8DIL1   A0A2S2NPF9   A0A2H8TR36   J9KJG8   A0A2S2PJ67   A0A0J7KMU1   J9KV04   V5I8F3   X1WJY4   A0A0J7KPZ3   Q868S6   A0A0J7K3F1   J9LJ80   A0A2S2QUS9   A0A2S2PEZ7   A0A0Q9WRU0   J9LAC1   J9LDW8   A0A0J7K840   A0A0J7KJ07   A0A0J7NMN5   A0A2S2PYG9   A0A2S2NJ82  

KEGG

101737582    no KO assigned | (RefSeq) uncharacterized LOC101737582

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0046983  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04623

Exp number, first 60 AAs:

0.03911

Total prob of N-in:

0.00496

outside

1  -  301

 

 

Pi

4.963231

Theta

55.670331

Tajima's D

-0.579716

CLR

137.540684

CSRT

0.224988750562472

Interpretation

Uncertain