SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14106
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841899?_partial_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.18 Peroxisomal   Reliability : 1.08
 

Sequence

CDS
ATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGTGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGCGAGGAGTGCCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATTATTGCGGCACTCTTCCCGCCGGCAGCGGGGGGGAACTTTGAGCCCCCCCAGATGGACGCCACGTGGAGCACGCCGCCGCGTCGTCCGAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCAGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACGATCGACGCGATTTTGCGCGTGCGTGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGGGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCTGTTCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGCCCTATGGGGTTCCCTCCCCGGGCTAAGTGTCGTCTGCTATGCTGACGATACGCTGGTCGTAACCCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCTTGCGCAGGCGTTCGCATCGGGGTCGGGGTGACCGGTCTCAGGTACCTCGGCCTCGAACTGGATGGTCGTTGGAGCTTCCGCGCTCACTTTAAGAAATTGGGCCCTCGGCTGATCGCGACAGCCGGCTCTTTGAGCCGACTTCTTCCTAACGTTGGGGGTCCCGATGAGGCGGCGCGCCGCCTATACATGGGGGTGGTGCGGTCGATGGCACTATACGGTGCTCCGGTATGGTGCCAGGCCCTGGCCCGCAAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCCATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCACTCGCTGCTGATTACAGGTGGCGTAGCGACCTCCGATCTAGGGGGGAAGGGCGCCCCGGCGAAGGTGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCATCCGTACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAGATGTTGACCGGCCATGGGTGTTTTGGCCGGTACCTCTTCAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGATGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGTGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG
Protein
MNKELLMEAAAVAAWAPKPAWLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIIAALFPPAAGGNFEPPQMDATWSTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLGGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGALWGSLPGLSVVCYADDTLVVTPGRDYRESARLACAGVRIGVGVTGLRYLGLELDGRWSFRAHFKKLGPRLIATAGSLSRLLPNVGGPDEAARRLYMGVVRSMALYGAPVWCQALARKNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGIRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAVERERESSSLSAPIRRRRAGGRRREYARTSRPL

Summary

EMBL
AB090825    BAC57926.1    LBMM01012027    KMQ86470.1    AB078931    BAC06456.1    + More
AB078935    BAC06462.1    AB078929    BAC06452.1    AB078930    BAC06454.1    D85594    BAA19776.1    KZ149896    PZC78733.1    KQ460685    KPJ12887.1    AB078936    BAC06464.1    LBMM01006671    KMQ90407.1    LBMM01006954    KMQ90166.1    LBMM01015565    KMQ84759.1    LBMM01006657    KMQ90417.1    LBMM01004272    KMQ92618.1    RSAL01003504    RVE40273.1    LBMM01008448    KMQ88867.1    LBMM01007036    KMQ90099.1    LBMM01015025    KMQ84953.1    LBMM01002480    KMQ94776.1    LBMM01002052    KMQ95336.1    LBMM01003988    KMQ92922.1    LBMM01004505    KMQ92346.1    LBMM01007425    KMQ89740.1    LBMM01008422    KMQ88894.1    LBMM01015018    KMQ84954.1    LBMM01004634    KMQ92224.1    LBMM01012412    KMQ86235.1    LBMM01005733    KMQ91252.1    LBMM01008278    KMQ89009.1    GGMR01000779    MBY13398.1    LBMM01005948    KMQ91066.1    ABLF02041886    LBMM01006063    KMQ90967.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    LBMM01003245    KMQ93755.1    GGMR01015159    MBY27778.1    LBMM01014122    KMQ85315.1    LBMM01008682    KMQ88705.1    LBMM01005474    KMQ91485.1    ABLF02011238    KU543683    AMS38371.1    LBMM01015285    KMQ84870.1    GFXV01003903    MBW15708.1    LBMM01005465    KMQ91492.1    ABLF02041557    GGMR01004600    MBY17219.1    LBMM01004262    KMQ92649.1    LBMM01008445    KMQ88871.1    LBMM01004261    KMQ92650.1    GGMR01014195    MBY26814.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    ABLF02011183    ABLF02041884    ABLF02059310    GFXV01002090    MBW13895.1    LBMM01006725    KMQ90373.1    GGMR01006838    MBY19457.1    GAKP01002292    JAC56660.1    ABLF02018942    ABLF02041885    AJ278684    CAB99192.1    ABLF02018808    KMQ94772.1    ABLF02021100    LBMM01006977    KMQ90149.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02014378    ABLF02034925    GGMR01011682    MBY24301.1    KQ971309    EEZ99146.1    ABLF02013358    ABLF02013361    ABLF02054869    ABLF02007989    GALA01001777    JAA93075.1    GALA01001776    JAA93076.1    GGMR01015354    MBY27973.1    KQ972226    KYB24577.1    GALA01000302    JAA94550.1    GGFK01005660    MBW38981.1    GGMR01019493    MBY32112.1    GGFM01001554    MBW22305.1    GEHC01000964    JAV46681.1    ABLF02023401    ABLF02029423    ABLF02060278    GAPW01000192    JAC13406.1    GEHC01000915    JAV46730.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF01553   Acyltransferase
PF01421   Reprolysin
PF00098   zf-CCHC
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
6AR3     E-value=0.0004672,     Score=106

Ontologies

Topology

Length:
761
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03959
Exp number, first 60 AAs:
0.00181
Total prob of N-in:
0.00045
outside
1  -  761
 
 

Population Genetic Test Statistics

Pi
109.711188
Theta
15.987428
Tajima's D
3.370117
CLR
0.503135
CSRT
0.992050397480126
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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