Gene

KWMTBOMO14101

Pre Gene Modal

BGIBMGA011388

Annotation

PREDICTED:_vacuolar_protein_sorting-associated_protein_37A-like_[Papilio_xuthus]

Location

Bomo_Chr23(+):17955583-17958724      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.78 Nuclear   Reliability : 2.016

CDS

ATGCTACAGTGGCCGTATTACAACGATCAAGACGCACGCAAAAGACAAATAGACACTTTAAAAGTCTTCAACGAAAATGTCGTTGAGATCAAAGAAAGTTCAGAGTATCGTATAGATTTTACTGTTAATCAGAAAAACATGTGCCTAAACGTGATACTAAGTCCAGATTTTCCTAACGAGAAGCCTTCTATATTTGTCAATCCACCGGTACTCCATCCGTGGGTCGCCGAAAACTCAAACCAAATCGTAGGAGCTCCGGGACTCTTGAATTTCACGATACACTCGGACCTGGGCCGCGTGGTACAAGCCATAATACGTGAATTCCAGAAATCTGTCTTAAACATAACTGTAGAAGTAAGCTCGAGATCAAGTGAGGCGAGTCCTCGGTCCACAGTCAGTGCTCAGTCAATGCTGTTTCCGGAACTTAATAATTTCACCATAGAGGAGTTAAGAGAGATATTAGAAAATACAGATTTGCAGGATAAACTTCTTGAGAATAACCCGCAGCTGATCGAATTAGATTTAGAGACGGAAGAGCTGATGAGCAGCATTGAGGAAGTGGCCCAGGAGAATATAGCGAAACAGCAAACCCTGGATGACATGAAGACTGAAGTTATAGAAATAATATCTAGTATAGTACAGATGAAGATGAACTACGAAGAATTGAACAAGAAACATCAGAAACTATGCGAGGTTTATGATCCTCACTGCATCAGGAATTGTCTTAGGGAGGCCGCGCTGAAAGCCGACGAGGATGCTGATGCGATAGCTGAACAGTTTTTACTAGGTAACATTCCAGTGGAGACATTCATATCAAAGTTCTCCGAGAAACGTGCCCTCGGTCAAGCCAGGAGGGCGAGGGAGGAAAGACTGGCCTACCAATTGGCGCAGCTGGACCAAACCAGGACATAA

Protein

MLQWPYYNDQDARKRQIDTLKVFNENVVEIKESSEYRIDFTVNQKNMCLNVILSPDFPNEKPSIFVNPPVLHPWVAENSNQIVGAPGLLNFTIHSDLGRVVQAIIREFQKSVLNITVEVSSRSSEASPRSTVSAQSMLFPELNNFTIEELREILENTDLQDKLLENNPQLIELDLETEELMSSIEEVAQENIAKQQTLDDMKTEVIEIISSIVQMKMNYEELNKKHQKLCEVYDPHCIRNCLREAALKADEDADAIAEQFLLGNIPVETFISKFSEKRALGQARRAREERLAYQLAQLDQTRT

Uniprot

H9JPD4   A0A3S2L5L2   A0A2W1BG74   A0A194PU15   A0A2A4JD12   A0A2H1WZU2   + More
A0A194RQH3   A0A1Y1K3Y5   A0A067QPU8   D6WNM6   A0A2J7R6S0   A0A1W4W5F9   Q5MBV7   A0A0T6BEE4   A0A1B0CMK2   A0A1L8DW70   A0A182Q4J2   A0A182MWC1   A0A182UEC2   A0A182VWU9   J3JVA5   Q7QCB0   A0A182RS49   A0A182NRN9   A0A182LEU7   A0A182HSS2   W8C774   A0A182YHQ0   A0A1L8DW59   A0A1S4FF18   A0A1Q3G2T9   A0A1S3CXB0   A0A3Q0ILN8   A0A182K6K1   A0A182VK27   Q174E9   A0A034VBS7   A0A0A1X2R3   A0A023EN07   A0A182HF89   A0A2H8TVY0   A0A182HCM0   A0A0K8UP09   A0A2M4BUI8   A0A2M4BUK2   A0A2M3Z8E1   A0A2S2PBM0   W5J4B7   A0A2S2QVI3   A0A2M4ALJ6   A0A182JJH5   A0A084VBK9   J9K9B4   A0A2J7R6S6   A0A182FSP7   A0A1J1J1L8   A0A1A9VRK3   A0A1A9ZGL6   A0A1B0FL22   A0A1A9X8S3   A0A1B0C3C1   A0A1B6CS85   A0A182P042   A0A1B6DC23   A0A1B6DIP5   A0A1B6C8J3   A0A2P8ZAG4   A0A1W4WFX8   A0A2R7VPV9   E0VN34   A0A0K8TMW7   A0A034V905   A0A182XAW8   A0A0P5CF30   A0A1L8HLD1  

Pubmed

19121390    28756777    26354079    28004739    24845553    18362917    + More
19820115    22516182    12364791    14747013    17210077    20966253    24495485    25244985    17510324    25348373    25830018    24945155    26483478    20920257    23761445    24438588    29403074    20566863    26369729    27762356   

EMBL

BABH01009875    RSAL01000135    RVE46252.1    KZ150256    PZC71790.1    KQ459593    + More
KPI96249.1    NWSH01001831    PCG69975.1    ODYU01012319    SOQ58573.1    KQ459875    KPJ19649.1    GEZM01093689    JAV56189.1    KK853153    KDR10569.1    KQ971342    EFA03761.1    NEVH01006756    PNF36533.1    AY838801    AAW28818.1    LJIG01001220    KRT85720.1    AJWK01018833    GFDF01003415    JAV10669.1    AXCN02000007    AXCM01005500    BT127172    AEE62134.1    AAAB01008859    EAA07506.5    APCN01000336    GAMC01003800    GAMC01003799    JAC02757.1    GFDF01003425    JAV10659.1    GFDL01000932    JAV34113.1    CH477412    EAT41445.1    GAKP01019934    JAC39018.1    GBXI01009252    JAD05040.1    GAPW01002841    JAC10757.1    JXUM01133812    KQ568030    KXJ69188.1    GFXV01005897    MBW17702.1    JXUM01127697    KQ567222    KXJ69549.1    GDHF01024096    JAI28218.1    GGFJ01007605    MBW56746.1    GGFJ01007606    MBW56747.1    GGFM01004048    MBW24799.1    GGMR01013969    MBY26588.1    ADMH02002125    ETN58736.1    GGMS01012542    MBY81745.1    GGFK01008296    MBW41617.1    ATLV01008177    KE524456    KFB35353.1    ABLF02014215    PNF36535.1    CVRI01000065    CRL05834.1    CCAG010022095    JXJN01024887    GEDC01021195    JAS16103.1    GEDC01014108    JAS23190.1    GEDC01011727    JAS25571.1    GEDC01027659    JAS09639.1    PYGN01000125    PSN53492.1    KK854023    PTY09584.1    DS235332    EEB14800.1    GDAI01002100    JAI15503.1    GAKP01019933    JAC39019.1    GDIP01171448    LRGB01000115    JAJ51954.1    KZS20745.1    CM004467    OCT96882.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000218220    UP000053240    UP000027135    + More
UP000007266    UP000235965    UP000192223    UP000092461    UP000075886    UP000075883    UP000075902    UP000075920    UP000007062    UP000075900    UP000075884    UP000075882    UP000075840    UP000076408    UP000079169    UP000075881    UP000075903    UP000008820    UP000069940    UP000249989    UP000000673    UP000075880    UP000030765    UP000007819    UP000069272    UP000183832    UP000078200    UP000092445    UP000092444    UP000092443    UP000092460    UP000075885    UP000245037    UP000009046    UP000076407    UP000076858    UP000186698   

PRIDE

H9JPD4   

Pfam

PF07200   Mod_r        + More
PF13499   EF-hand_7
PF03045   DAN

Interpro

IPR037859   Vps37        + More
IPR009851   Mod_r       
IPR016135   UBQ-conjugating_enzyme/RWD       
IPR037202   ESCRT_assembly_dom       
IPR029012   Helix_hairpin_bin_sf       
IPR018247   EF_Hand_1_Ca_BS       
IPR011992   EF-hand-dom_pair       
IPR004133   DAN       
IPR002048   EF_hand_dom       
IPR029034   Cystine-knot_cytokine       

SUPFAM

SSF54495   SSF54495        + More
SSF140111   SSF140111       
SSF47473   SSF47473       

Gene 3D

1.10.287.660     3.10.110.10     2.10.90.10    

CDD

cd00051  EFh

ProteinModelPortal

H9JPD4   A0A3S2L5L2   A0A2W1BG74   A0A194PU15   A0A2A4JD12   A0A2H1WZU2   + More
A0A194RQH3   A0A1Y1K3Y5   A0A067QPU8   D6WNM6   A0A2J7R6S0   A0A1W4W5F9   Q5MBV7   A0A0T6BEE4   A0A1B0CMK2   A0A1L8DW70   A0A182Q4J2   A0A182MWC1   A0A182UEC2   A0A182VWU9   J3JVA5   Q7QCB0   A0A182RS49   A0A182NRN9   A0A182LEU7   A0A182HSS2   W8C774   A0A182YHQ0   A0A1L8DW59   A0A1S4FF18   A0A1Q3G2T9   A0A1S3CXB0   A0A3Q0ILN8   A0A182K6K1   A0A182VK27   Q174E9   A0A034VBS7   A0A0A1X2R3   A0A023EN07   A0A182HF89   A0A2H8TVY0   A0A182HCM0   A0A0K8UP09   A0A2M4BUI8   A0A2M4BUK2   A0A2M3Z8E1   A0A2S2PBM0   W5J4B7   A0A2S2QVI3   A0A2M4ALJ6   A0A182JJH5   A0A084VBK9   J9K9B4   A0A2J7R6S6   A0A182FSP7   A0A1J1J1L8   A0A1A9VRK3   A0A1A9ZGL6   A0A1B0FL22   A0A1A9X8S3   A0A1B0C3C1   A0A1B6CS85   A0A182P042   A0A1B6DC23   A0A1B6DIP5   A0A1B6C8J3   A0A2P8ZAG4   A0A1W4WFX8   A0A2R7VPV9   E0VN34   A0A0K8TMW7   A0A034V905   A0A182XAW8   A0A0P5CF30   A0A1L8HLD1  

KEGG

101740202    K12185 ESCRT-I complex subunit VPS37 | (RefSeq) vacuolar protein sorting-associated protein 37A-like

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0032509   GO:0015031   GO:0000813   GO:0006623   GO:0043162   GO:0043231   GO:0006612   GO:0005509  

PANTHER

PTHR13678  

Length:

303

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00216

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04382

outside

1  -  303

 

 

Pi

212.156257

Theta

137.045112

Tajima's D

1.668567

CLR

2.23106

CSRT

0.826158692065397

Interpretation

Uncertain