Gene

KWMTBOMO14095

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):17762028-17763798      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.377

CDS

ATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTCTTTCAGAGGGGAAGCTCCGCACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATTTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACGCACATAGACACCCTTCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTCGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQRGSSARISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGNRTRRTRQRVRRAT

Uniprot

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   O96544   A0A194Q1H8   A0A1Y1NA23   V5GNF3   A0A2S2PR14   V5GNJ2   A0A139WA11   V5I850   X1WXU3   X1WMU5   A0A2S2Q823   A0A139W8G9   X1WLB2   J9KKL3   X1WWC4   A0A087U2S8   A0A1Y1M7E9   A0A2S2PH29   A0A087T1W0   J9KC83   A0A2S2PPK8   O76197   X1WL89   A0A224XF24   A0A023EYS8   A0A2J7R7D0   X1X928   A0A2S2PX53   A0A2J7RL12   A0A023EZE6   A0A2S2N814   A0A2J7RS81   A0A2S2QTZ8   A0A2J7R8R8   J9KCZ4   A0A1Y1LKN6   A0A2J7PDM0   A0A2J7RIW7   A0A3N5Z7I3   A0A2J7Q059   A0A2J7QUJ9   A0A2J7Q4F7   A0A2J7R4B7   A0A2A4K8E7   A0A2J7RM10   A0A2J7PMP6   A0A2J7RB54   A0A2S2QJM7   A0A2J7Q627   J9M522   A0A2S2NGV8   A0A2J7RPU2   A0A069DZC5   A0A2J7PU96   A0A069DW01   X1WNI2   A0A2J7PMP9   A0A2J7RS77   A0A2H8TWD9   A0A0J7K4E0   A0A2M4BDV6   A0A2J7QQP1   A0A2S2NJB5   A0A2J7QEZ4   A0A2S2RAN7   A0A2J7R2E1   A0A2J7PVX3   A0A087V0P8   A0A2J7Q5G9   A0A2J7QFL0   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7RKP3   A0A0L0CBP5   A0A2J7QB68   A0A2J7PQB5   A0A2M4BD67   A0A0A9YJ00   A0A2S2Q352   A0A2J7QR37   A0A2S2QEE0   A0A146LCK7   X1WZH0   A0A2J7Q6J2   A0A2A4K918   A0A2J7QPI2   A0A2J7Q1Y9   A0A2J7R4B1   A0A2J7R579   A0A2J7PBY3   X1WN18   A0A2J7QY69   A0A2J7RRU8  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    8934517    25474469    30086797    26334808    26108605    25401762    26823975   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    AF081101    AAC72919.1    KQ459580    KPI99178.1    GEZM01008457    JAV94772.1    GALX01005359    JAB63107.1    GGMR01019198    MBY31817.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GALX01005300    JAB63166.1    ABLF02008933    ABLF02014862    ABLF02014866    ABLF02061908    GGMS01004685    MBY73888.1    KQ973342    KXZ75569.1    ABLF02042518    ABLF02057746    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    GEZM01038405    JAV81653.1    GGMR01016114    MBY28733.1    KK113014    KFM59099.1    ABLF02033757    GGMR01018716    MBY31335.1    AF012049    AAC24972.1    ABLF02019349    ABLF02041900    GFTR01008038    JAW08388.1    GBBI01004395    JAC14317.1    NEVH01006736    PNF36716.1    ABLF02066620    GGMS01000737    MBY69940.1    NEVH01002704    PNF41489.1    GBBI01004571    JAC14141.1    GGMR01000676    MBY13295.1    NEVH01000269    PNF43694.1    GGMS01012005    MBY81208.1    NEVH01006721    PNF37225.1    ABLF02008463    GEZM01053022    JAV74219.1    NEVH01026386    PNF14434.1    NEVH01003017    PNF40781.1    RPOV01000134    RPJ78669.1    NEVH01020071    PNF21969.1    NEVH01010546    PNF32261.1    NEVH01018383    PNF23463.1    NEVH01007443    PNF35684.1    NWSH01000032    PCG80497.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01005938    PNF38077.1    GGMS01008766    MBY77969.1    NEVH01017542    PNF24034.1    ABLF02024246    GGMR01003407    MBY16026.1    NEVH01001355    PNF42855.1    GBGD01000880    JAC88009.1    NEVH01021205    PNF19912.1    GBGD01000799    JAC88090.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01023961    PNF17613.1    NEVH01000280    PNF43672.1    GFXV01006424    MBW18229.1    LBMM01014395    KMQ85192.1    GGFJ01001857    MBW50998.1    NEVH01012084    PNF30905.1    GGMR01004661    MBY17280.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GGMS01017914    MBY87117.1    NEVH01007838    PNF34986.1    NEVH01020940    PNF20481.1    KL813758    KFM83187.1    NEVH01017559    PNF23833.1    NEVH01014858    PNF27387.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    NEVH01002716    PNF41415.1    JRES01000644    KNC29657.1    NEVH01016302    PNF25823.1    NEVH01022639    PNF18527.1    GGFJ01001858    MBW50999.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GGMS01002955    MBY72158.1    NEVH01011985    PNF31054.1    GGMS01006359    MBY75562.1    GDHC01014349    JAQ04280.1    ABLF02034467    NEVH01017470    PNF24199.1    PCG80496.1    NEVH01012089    PNF30491.1    NEVH01019376    PNF22596.1    NEVH01007578    PNF35646.1    NEVH01007393    PNF35987.1    NEVH01027074    PNF13841.1    ABLF02021177    ABLF02027367    ABLF02066338    NEVH01009134    PNF33528.1    NEVH01000598    PNF43535.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000218220    + More
UP000036403    UP000037069   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    K9N5J5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   O96544   A0A194Q1H8   A0A1Y1NA23   V5GNF3   A0A2S2PR14   V5GNJ2   A0A139WA11   V5I850   X1WXU3   X1WMU5   A0A2S2Q823   A0A139W8G9   X1WLB2   J9KKL3   X1WWC4   A0A087U2S8   A0A1Y1M7E9   A0A2S2PH29   A0A087T1W0   J9KC83   A0A2S2PPK8   O76197   X1WL89   A0A224XF24   A0A023EYS8   A0A2J7R7D0   X1X928   A0A2S2PX53   A0A2J7RL12   A0A023EZE6   A0A2S2N814   A0A2J7RS81   A0A2S2QTZ8   A0A2J7R8R8   J9KCZ4   A0A1Y1LKN6   A0A2J7PDM0   A0A2J7RIW7   A0A3N5Z7I3   A0A2J7Q059   A0A2J7QUJ9   A0A2J7Q4F7   A0A2J7R4B7   A0A2A4K8E7   A0A2J7RM10   A0A2J7PMP6   A0A2J7RB54   A0A2S2QJM7   A0A2J7Q627   J9M522   A0A2S2NGV8   A0A2J7RPU2   A0A069DZC5   A0A2J7PU96   A0A069DW01   X1WNI2   A0A2J7PMP9   A0A2J7RS77   A0A2H8TWD9   A0A0J7K4E0   A0A2M4BDV6   A0A2J7QQP1   A0A2S2NJB5   A0A2J7QEZ4   A0A2S2RAN7   A0A2J7R2E1   A0A2J7PVX3   A0A087V0P8   A0A2J7Q5G9   A0A2J7QFL0   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7RKP3   A0A0L0CBP5   A0A2J7QB68   A0A2J7PQB5   A0A2M4BD67   A0A0A9YJ00   A0A2S2Q352   A0A2J7QR37   A0A2S2QEE0   A0A146LCK7   X1WZH0   A0A2J7Q6J2   A0A2A4K918   A0A2J7QPI2   A0A2J7Q1Y9   A0A2J7R4B1   A0A2J7R579   A0A2J7PBY3   X1WN18   A0A2J7QY69   A0A2J7RRU8  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

475

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.38045

Exp number, first 60 AAs:

0.03011

Total prob of N-in:

0.01516

outside

1  -  475

 

 

Pi

57.058001

Theta

33.116374

Tajima's D

1.870219

CLR

0.564812

CSRT

0.865006749662517

Interpretation

Uncertain