Silkworm Genome Informatics Database

Gene

KWMTBOMO14093

Pre Gene Modal

BGIBMGA011213

Annotation

PREDICTED:_scavenger_receptor_class_B_member_1_[Bombyx_mori]

Location

Bomo_Chr23(-):17708623-17710267 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.076

CDS

ATGTACTCGCTTCCACCTTCACTGGAGCAAAGATTCAAACTATACCTAAACATACTGCCAATAGTCGAGCAAGCAGCGATGTATATCATGTTCATCACCGGAGCTGTCCTCGTCATCACCACCATCTACATACTCAGCTTCAAGGTGATGTTCAAGAACTTCGAAAAGAACAAGGACGCTTGGCTCGAGAAGGCCAAACTGAATGATGGAGTGTACGCGCCCTGCGAGATACCACTCTCGGAGAGCGACTCCGATGAAATGATCAAATTAAACATCAAATTAAATGACAGGCTATACGAAACCGTCAACAGCGTCAAGGACAAACTGACAGAAATGGCGCACGTCAAAAGCTTGTTCGACAGGAAGCCGTCCCTAAAAGATTCAAGTCAAACGTCAAAAGCTTACGAGATCATAAATCAGACGGACAGCGACGAGGACTTCAAATACCTTGAGGTCATCGAAGACGGAGAGCTGGAGGGCTGTGACGTCAGCCTGGGCGGCTCGCAGCGAATGAGGAACCTCAAAGACTTGGATGAGAGGAACAACGAATTAAGCTTACACATATCGGATTGA

Protein

MYSLPPSLEQRFKLYLNILPIVEQAAMYIMFITGAVLVITTIYILSFKVMFKNFEKNKDAWLEKAKLNDGVYAPCEIPLSESDSDEMIKLNIKLNDRLYETVNSVKDKLTEMAHVKSLFDRKPSLKDSSQTSKAYEIINQTDSDEDFKYLEVIEDGELEGCDVSLGGSQRMRNLKDLDERNNELSLHISD

Similarity

Belongs to the CD36 family.

Uniprot

H9JNV9 H9JYI0 A0A2W1BFP6 A0A2W1BC66 A0A0L7KN46 A0A2A4K141 + More
A0A0L7KAI6 A0A2H1WLC8 A0A3S2NFK2 I4DS21 A0A194PSH0 A0A194RQ90 A0A2P8XJ36 A0A1I8PIM0 A0A1I8PIY2 A0A1I8PIT2

Pubmed

19121390 28756777 26227816 22651552 26354079 29403074 + More

EMBL

BABH01009848 BABH01009849 BABH01043679 KZ150583 PZC70493.1 KZ150519 + More
PZC70616.1 JTDY01008792 KOB64394.1 NWSH01000254 PCG77991.1 JTDY01010187 KOB60297.1 ODYU01009439 SOQ53869.1 RSAL01000135 RVE46258.1 AK405375 BAM20711.1 KQ459593 KPI96257.1 KQ459875 KPJ19657.1 PYGN01001953 PSN32018.1

Proteomes

UP000005204 UP000037510 UP000218220 UP000283053 UP000053268 UP000053240 + More
UP000245037 UP000095300

PRIDE

H9JNV9 H9JYI0

Pfam

PF01130 CD36

Interpro

IPR002159 CD36_fam + More
IPR005428 CD36/SCARB1/SNMP1

ProteinModelPortal

H9JNV9 H9JYI0 A0A2W1BFP6 A0A2W1BC66 A0A0L7KN46 A0A2A4K141 + More
A0A0L7KAI6 A0A2H1WLC8 A0A3S2NFK2 I4DS21 A0A194PSH0 A0A194RQ90 A0A2P8XJ36 A0A1I8PIM0 A0A1I8PIY2 A0A1I8PIT2

KEGG

101740110 no KO assigned | (RefSeq) scavenger receptor class B member 1

GO

GO:0016021

PANTHER

PTHR11923

Length:

190

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.85773

Exp number, first 60 AAs:

22.85773

Total prob of N-in:

0.01186

POSSIBLE N-term signal

sequence

outside

1 - 24

TMhelix

25 - 47

inside

48 - 190

Pi

170.174541

Theta

155.949964

Tajima's D

0.459735

CLR

0

CSRT

0.502224888755562

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree