SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14091
Pre Gene Modal
BGIBMGA011213
Annotation
PREDICTED:_scavenger_receptor_class_B_member_1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.786
 

Sequence

CDS
ATGTACTCGCTTCCACCTTCACTGGAACAAAGATTCAAACTATACCTAAACATACTGCCAATAGTCGAGCAAGCAGCGATGTATATCATGTTCATCACCGGAGCTGTCCTCGTCATCACCACCATCTACATACTCAGCTTCAAGGTGATGTTCAAGAACTTCGAAAAGAACAAGGACGCTTGGCTCGAGAAGGCCAAACTGAATGATGGAGTGTACGCGCCCTGCGAGATACCACTCTCGGAGAGCGACTCCGATGAAATTATCAAATTAAACATCAAATTAAATGACAGGCTATACGAAACCGTCAACAGCGTCAAGGACAAACTGACAGAAATGGCGCACGTCAAAAACCTGTTCGACAGGAAGCCGTCCCTAAAAGATTCAAGTCAAACGTCAAAAGCTTACGAGATCATAAATCAGACGGACAGTGACGAGGACTTCAAATACCTTGAGGTCATCGAAGACGGAGAGCTGGAGGGCTGTGACGTCAGCCTCGGCGGCTCGCAGCGAATGAGGAACCTCAAAGACTTGGATGAGAGGAACAACGAATTAAGCTTACACATATCGGATTGA
Protein
MYSLPPSLEQRFKLYLNILPIVEQAAMYIMFITGAVLVITTIYILSFKVMFKNFEKNKDAWLEKAKLNDGVYAPCEIPLSESDSDEIIKLNIKLNDRLYETVNSVKDKLTEMAHVKNLFDRKPSLKDSSQTSKAYEIINQTDSDEDFKYLEVIEDGELEGCDVSLGGSQRMRNLKDLDERNNELSLHISD

Summary

Similarity
Belongs to the CD36 family.
Pfam
PF01130   CD36
Interpro
IPR002159   CD36_fam        + More
IPR005428   CD36/SCARB1/SNMP1       

Ontologies

Topology

Length:
190
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.85773
Exp number, first 60 AAs:
22.85773
Total prob of N-in:
0.01186
POSSIBLE N-term signal
sequence
outside
1  -  24
TMhelix
25  -  47
inside
48  -  190
 
 

Population Genetic Test Statistics

Pi
238.992476
Theta
144.498134
Tajima's D
2.055305
CLR
0
CSRT
0.887405629718514
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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