SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14087  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011215
Annotation
PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr23(-):17645964-17668947      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.09
 

Sequence

CDS
ATGGCAGATTCATTCTTTGGGTTCGATACTTCATTATCGAACTTAAATGACGACGAAGGTTGCGCAGAACCCTCAGAGGACGAATACGATGCATTGAACGATGAGACATTCGGCCATGGATCCGACGAATATGACTGGGAGGTGGAACATGAGCACCTCGCCGGACAGCTCGAGAGCAGTCGACGCCAGAACAGCGGCATCGACGAGATTGCCAACTCACAGCTCGAGCTGTCACTGTCGCAGTTAGTTTTGGACGATACGGACGCGCCGCAGTCCGGGTCGCTCGGCTCCAGCGTTTGGAGAAACGATGCGCCCTTCCCAGGACCGCAGGCCCCGGCGCCGCTCAAGAACGTATGCACGGTCGAAGAGTTGGAGCGGCAGCTGCGTCACGCGCAGTCGCAACCCATGCAACAGCACTCCTCGCAGCAGCCGTACAACTCGCAGAACTACTACCAGCCAAGGTTTCCGGTGATACTACAAAGACCTCCAGGCTTACAAGCGCCCGTATTAGTACCGTTCGTATCCCAGCAGCACAACATGAACCAACCAATGAACACAATGCTCAGTCAGAACAATCAAATTCCGCAAAACAATCAAATGATGAGCAATCAAATGGGCCAAAACCAGTTTATGCAAAACAACCAGATTGGACAGTTTCAGAACAGTCAAATGGGAACGAATTTAGGGCCTAATGTACACCAGATGAGGCAAAACATGAAAATGAATCAAATGGGTCCAAAGAAACCTATGCCACAGAACTTAAATCAGATGAGCCAAAACGTTAATCAAATGCCCAAAAATATGACACAAATGGGACAGAATATCGCCCAACCACATCCTCAAATTAACCAGAACATCCCGCAAATGAATCCGAACATAAATCAAATGAACCTGTCTCAGATGCCGCATAATTACAATCACATGAACCAAAATTCTAGCCAAATGGGTCCAAGTATGAATCAGATTGGCCCAAACACAAACCATATGGGACCAGGTATAGGCCAAATATCCCAACCGATTAACAAACTAGGTTCAAACGTTAACCAAATGACGCCCAACATGAATCAAAACTCAAATCATATAAATCAAATGATTCCCAATTTGAACAAAATGCCTCCCAATTCTCAGTTGGCTCAAAATTCAAACCAATTAAGCTCTAACACAAAACCGATGGGTCAAAACGTGAATCAAATGATGAACGGTAACCAGTTTGGCCAAATGAATCAGTTCCCGCATATGATGGGCCAACCTCGCATGATGGGGCCTCCACCCGGTATCAATATGCCCAGGCAAAACTACAACCAGCAGAACGTTGGACAGTTTAATTCCAACATTCGAGGGCCGACACTGAAGAATGAATCGCAGCAAGTGCCCACTCAACAATACAATCAGATCGCGAACAAAATGAGCCAGCCAGCCAAATCAGTATCCCCGCAGAGGCTAAAGAAAACCGAAACGAAACAAAAGACAAGAATCTACAACAACACAAATTTATCCTCGCAGAATTTAGTTCAAATAATACAGAACACTCATCCGATACTGCAGTACAACAGCGGGTTCCATAATGCATCGCACCATCCCATGCTGGGTCGTGGTCCTCTGAACAATCAGCTCAACCATCCACTCTTGAATCAGAGGCAGAACGGAACCTACAGTAACAGAGAGTCCTCGCAAGACGAGGAGGTCGCCAACGAAGACGAGTACGCTGGTCTCATGTCGCAGAGAGAGAAGCAGTGGCTACTGAACATACAGATGCTGCAACTGAACACGGGGACTCCGTACATACACGATTATTATTATACCGTCTTCTTAGAAAGGCAGGCAAATAAAGAGAAGGAAGGCGTGAAGGAAGCTCACAAGGCCAACCAACAGAATCATCCCTTCTACAGCGGCACAGTGAAGCAAGACGGTCACCAGCACAGAGAGCGGCACAACTCCAACCGACACAACTCGACGGGCGAGGAGGCCGGGGCTCCGCGGGCCTACGTGCCGACGCAGTTCGAGAACTCGCTCGGGAAGCTGCAGTGTGGCAGCGTTACTGCCCCAAGGAAGTTGATAGACGTGGAAGTGGTCGGTGGAGAGGTGGCACCCTCCAGGATGTCCAGAGCTTCCAGTGTGGCGAGCACAGCCAATCCTGCTGAAGCGCCTAGAGAGATGAAAAGGACGAAACAATTGCTCCTAGATATAGAAGCGCTGTATCTGATCCTGTTGAGATTAGAAGAGCTAAACGACCCGCTGGCGATATCCAATGCGTTAATACTGAAGGAAAGAGAAGAGAAACAAAAACTATTAGACGTAGCTCAGAAAGAACTGAACAAAGAGGATGACGACGATTCTAATCTGTTCTTGAAGAATATAGAGTCGGTGCAGAGGAGGCCCAAACAGGAGAGCCCCAAGAACGAGAGCATCGATAAGAGACAGGTCGTCAACCTGGCGGTAGCCCAGAAGCCGGCACCGGTGAACCTTCTGGACGAGAACAAGGATGACCTGATCAGCAAGATGTTCGCGGGCCTGCTGCACGCCGACCGTGTGGCGCAAATGATGAACGTCAGGAAGGGAAGGATGCTAATATCTCGCTTCGTGAGGCGAGTGGGTCCGAGTCACCCGCGCCTGCGCACGCTGTGGGGCCGCCTGCTGAGGGCGCTCACCGTCGCCCGACGTCACGACCCGACCGTCGATCTAGCGACCCCGTACGCAGAATACATCCAGAGCACGACGGGCTGGTCGGCCGTGCTGGAGTCGTGCAGCGTTCTGTCCGAAGCGTTGGATCCCGCTCGCACGCCCCACGCTCTGTCGTCATCTTTCACGCTCTCGGCCATCTGCGCTCTAGTACTGAAAGCGTCTACCCTGGTGAGCACGGGTGAGCCCTCCGCCGGTGAGCGCCAGTGGGCCAAGTTCCTGCGCACGGCGGCCCGCGCCCTCCGCGCCGCACCGCCTGGCCCCCGCCCCTTGCGCCCCCTGCCCGAGCCCCGCCTGCGCCGCCACCTCCGCCAGCTCGAGGCGCGCGGCCCCGTCGAGATCCTGCAGCGAGGTCAGGCGCCCAACCTCGTCGACATGACGAAGCAAGAGATGCACGAGCTGCTCGTGAAGCACCTGTGCTGA
Protein
MADSFFGFDTSLSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHEHLAGQLESSRRQNSGIDEIANSQLELSLSQLVLDDTDAPQSGSLGSSVWRNDAPFPGPQAPAPLKNVCTVEELERQLRHAQSQPMQQHSSQQPYNSQNYYQPRFPVILQRPPGLQAPVLVPFVSQQHNMNQPMNTMLSQNNQIPQNNQMMSNQMGQNQFMQNNQIGQFQNSQMGTNLGPNVHQMRQNMKMNQMGPKKPMPQNLNQMSQNVNQMPKNMTQMGQNIAQPHPQINQNIPQMNPNINQMNLSQMPHNYNHMNQNSSQMGPSMNQIGPNTNHMGPGIGQISQPINKLGSNVNQMTPNMNQNSNHINQMIPNLNKMPPNSQLAQNSNQLSSNTKPMGQNVNQMMNGNQFGQMNQFPHMMGQPRMMGPPPGINMPRQNYNQQNVGQFNSNIRGPTLKNESQQVPTQQYNQIANKMSQPAKSVSPQRLKKTETKQKTRIYNNTNLSSQNLVQIIQNTHPILQYNSGFHNASHHPMLGRGPLNNQLNHPLLNQRQNGTYSNRESSQDEEVANEDEYAGLMSQREKQWLLNIQMLQLNTGTPYIHDYYYTVFLERQANKEKEGVKEAHKANQQNHPFYSGTVKQDGHQHRERHNSNRHNSTGEEAGAPRAYVPTQFENSLGKLQCGSVTAPRKLIDVEVVGGEVAPSRMSRASSVASTANPAEAPREMKRTKQLLLDIEALYLILLRLEELNDPLAISNALILKEREEKQKLLDVAQKELNKEDDDDSNLFLKNIESVQRRPKQESPKNESIDKRQVVNLAVAQKPAPVNLLDENKDDLISKMFAGLLHADRVAQMMNVRKGRMLISRFVRRVGPSHPRLRTLWGRLLRALTVARRHDPTVDLATPYAEYIQSTTGWSAVLESCSVLSEALDPARTPHALSSSFTLSAICALVLKASTLVSTGEPSAGERQWAKFLRTAARALRAAPPGPRPLRPLPEPRLRRHLRQLEARGPVEILQRGQAPNLVDMTKQEMHELLVKHLC

Summary

Uniprot
H9JNW1   A0A212ENX3   A0A2H1V8W5  
Pubmed
19121390    22118469   
EMBL
BABH01009841    BABH01009842    BABH01009843    AGBW02013603    OWR43188.1    ODYU01001264    + More
SOQ37241.1   
Proteomes
UP000005204    UP000007151   
PRIDE
H9JNW1   
Interpro
IPR039900   Pat1-like       
ProteinModelPortal
H9JNW1   A0A212ENX3   A0A2H1V8W5  

Ontologies

KEGG
101739698    K12617 DNA topoisomerase 2-associated protein PAT1 | (RefSeq) putative leucine-rich repeat-containin
PATHWAY
03018    RNA degradation - Bombyx mori (domestic silkworm)
GO
GO:0000290  
PANTHER
PTHR21551  

Topology

Length:
1033
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01746
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1033
 
 

Population Genetic Test Statistics

Pi
208.285614
Theta
176.498599
Tajima's D
0.897599
CLR
0.382873
CSRT
0.631818409079546
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号