Gene

KWMTBOMO14085

Pre Gene Modal

BGIBMGA011216

Annotation

PREDICTED:_toll-like_receptor_3_[Bombyx_mori]

Location

Bomo_Chr23(-):17619542-17626847      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.382

CDS

ATGGGACGTTGGTTATCGCAGACCGTTGAGTACATGACTTTCTACGGAAATAAATTCGTCGACAGAAGCGTGGCCGGTGAACAGTACAACATGATTATAAACGCTACCGGCGCTGTCGAAACTGAGCCGGTGTTCAGCTTACAGTACCAAGGTACGACAGTCTGGTCCACTTCAATTGAATACGTCAGCTTCCCGAGCCTAAAGGAGCTGGATCTGCGAAGGTGTTCAATCCAAGTGCTCAGAAGCAATATGTTCAGGGGTATGCCTTCACTAGAAGCTTTATATATAGGGGAGAATGAGATTTATCAAGTCGAATCCAACACTTTTGCTGGTCTAAATAAGTTATTACATCTAGACTTTAGCAGGAACGAAGCATTCGACAGTACGGGGTCTCCTAAAAATCTAATTACCCCGCAAACACCGCTATTCGATGGCCTAACAAGTTTGGTATCTCTAGATCTTTCGTTCACAAAGATGTCCAAACGTAATGTGGCAGTGCTAACAGGCTTAGGACCGAATTTGAGAAGGCTGTCGATATGCGATACAGGGCTGCAGGATTTGAGGAGCGACATTTTTTCTAAAACAAATCTCACGTACTTGGATCTTTCGAAGAACAACGGGATCTTGAACACGCCTAACATATTGCGAGGGCTTGAAGATACTTTAGTGGTATTGTACGCTAATACTATAGGCACAGGTCGGGTCGATATGTTAAAGAATTTCCACAGACTGGAGATATTGCAATTACTGAACAACGAAATAACGTCTCTACCACAAGAAGTCGCGGCAACTTGGAGGAGCCTCCAGATTTTGGACTTGAACAAGAACAGGATTATAACGTGGTTCGAACCGATATTCTCGCTGATACCTAACCTCAAATTCTTGGCACTCAAACACAACAACATAAACGTGATCCGCGAAGACATGATCGTGGATTTCAGGAACATATCGTATCTGGCCCTGGCCGGAAACTTCTTCATGTGCAACTGCAACTCCAGAGATTTCCTCGAGACGGCGGCTAGGAACGAGAGAAACCGACAAAACGGATATATAAAGTCTGTTTACGAATCGAAAAACCTGTTTCTGTACCATAGAGGGTTCGAAGATTTCAATACGCTTATAGCGCAAAGGAAGCCCGTAGTTTTCGAAAACTCCATCAGCGAATGGGACAACGAGGAAGAGAGTGTATACCTATTGACCGATTTCTATGGTCGAAACTATATTTGTGCGTCGTTTGCTTCGGACGAAGGCGAGGCCATCTTCATGGGGGACGTGCCCACCTGCTACGCTCGTCGAGATATGCAGTACGACGAAAAGATGATTAAAAATCAGTACAAATTGATTGCTTTAATTCTGTTACCGTGCGTTTTATTACCGCTGCTGATGCTGTTCGTATTCAGAAGGACGATTTTTTATTTTCTAATAATGATGCGGAATTCTGCTGCCCTCACCATGATCAATAAGGATAAGACCGGTGTCGATGGTACAATATTCAACTACGATGTATTCGTGTCGTACTGCAACGAGGACAGGGTGTGGGTGCTCGACCATCTCCTGCCGCAGTTGGAGTCCAATTGCAACATCAGCGTCTGCCTCCATGAGAGAGATTTTCAGATCGGACTCTCCATCCTGGAGAATATCGTCGCCTGCATGGACCGTTCCAGGGCGATCATGCTGATCATATCAAAACGTTTCCTCATGAGTCAGTGGTGCCAGTTCGAAATGCATTTAGCCCAGCACAGGCTGTTAGAGACGCGTCGGAACGATTTGATACTTGTTCTGTTAGAAGAAATACCGCGGCGCATCCGCCCAACGACCCTCCACTATCTGATGCTGACGAAGACTTACATAATCTGGCCGAAAGTCGCGCACGAAAGAAACATTTTCTGGAGGAGGCTACGAAAAGGCCTGGTGACGCAGAAACTGAAGCACACGGAAAACGTATCTTTAGCTTGA

Protein

MGRWLSQTVEYMTFYGNKFVDRSVAGEQYNMIINATGAVETEPVFSLQYQGTTVWSTSIEYVSFPSLKELDLRRCSIQVLRSNMFRGMPSLEALYIGENEIYQVESNTFAGLNKLLHLDFSRNEAFDSTGSPKNLITPQTPLFDGLTSLVSLDLSFTKMSKRNVAVLTGLGPNLRRLSICDTGLQDLRSDIFSKTNLTYLDLSKNNGILNTPNILRGLEDTLVVLYANTIGTGRVDMLKNFHRLEILQLLNNEITSLPQEVAATWRSLQILDLNKNRIITWFEPIFSLIPNLKFLALKHNNINVIREDMIVDFRNISYLALAGNFFMCNCNSRDFLETAARNERNRQNGYIKSVYESKNLFLYHRGFEDFNTLIAQRKPVVFENSISEWDNEEESVYLLTDFYGRNYICASFASDEGEAIFMGDVPTCYARRDMQYDEKMIKNQYKLIALILLPCVLLPLLMLFVFRRTIFYFLIMMRNSAALTMINKDKTGVDGTIFNYDVFVSYCNEDRVWVLDHLLPQLESNCNISVCLHERDFQIGLSILENIVACMDRSRAIMLIISKRFLMSQWCQFEMHLAQHRLLETRRNDLILVLLEEIPRRIRPTTLHYLMLTKTYIIWPKVAHERNIFWRRLRKGLVTQKLKHTENVSLA

Uniprot

H9JNW2   A0A2A4K1U2   A0A2H1WD12   A0A2W1BAS6   A0A3S2LX39   A0A346RAG3   + More
A0A194RQS6   A0A2W1B918   A0A194PS42   A0A194PSH5   A0A212FDR6   A0A1J1IW82   A0A1S4FZJ5   Q16J46   B4MLK0   A0A182UC86   A0A182GA40   Q8WRE3   Q5TWL7   B4KY26   A0A182L3J3   A0A1Q3FJ76   A0A182I6U3   A0A182WWK7   A0A182UXY0   A0A182GZQ1   A0A1Q3FJA2   B4LGE3   A0A182KAK8   A0A182P120   A0A182FGA8   A0A182WHW3   A0A182MKR3   A0A182NLR7   W5JBQ4   A0A182R9T3   A0A067RC49   A0A182Q511   A0A084WRN1   A0A182Y334   A0A2J7PRY1   A0A1I8M983   A0A1W4VTK6   W5JUT4   A0A1I8P2A3   A0A1I8P2C1   A0A0P5M134   A0A0P6HT22   A0A0P6C638   Q16F50  

Pubmed

19121390    28756777    29910977    26354079    22118469    17510324    + More
17994087    26483478    12213252    12364791    14747013    17210077    20966253    20920257    23761445    24845553    24438588    25244985    25315136   

EMBL

BABH01009840    BABH01009841    NWSH01000254    PCG77996.1    ODYU01007785    SOQ50846.1    + More
KZ150562    PZC70527.1    RSAL01000135    RVE46262.1    MH243029    AXS59163.1    KQ459875    KPJ19660.1    KZ150508    PZC70644.1    KQ459593    KPI96261.1    KPI96262.1    AGBW02009006    OWR51881.1    CVRI01000059    CRL03398.1    CH478031    EAT34302.2    CH963847    EDW72856.2    JXUM01050404    JXUM01050405    JXUM01050406    JXUM01050407    JXUM01050408    JXUM01050409    JXUM01050410    JXUM01050411    AF444782    AAL37903.1    AAAB01008807    EAL41903.2    CH933809    EDW18728.2    GFDL01007493    JAV27552.1    APCN01003701    JXUM01022143    JXUM01022144    JXUM01022145    KQ560622    KXJ81569.1    GFDL01007437    JAV27608.1    CH940647    EDW70472.2    AXCM01006141    ADMH02001954    ETN60295.1    KK852740    KDR17393.1    AXCN02000966    ATLV01026173    KE525407    KFB52875.1    NEVH01021944    PNF19087.1    ADMH02000009    ETN68112.1    GDIQ01171193    JAK80532.1    GDIQ01014598    JAN80139.1    GDIP01012917    JAM90798.1    CH478510    EAT32867.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000183832    UP000008820    UP000007798    UP000075902    UP000069940    UP000007062    UP000009192    UP000075882    UP000075840    UP000076407    UP000075903    UP000249989    UP000008792    UP000075881    UP000075885    UP000069272    UP000075920    UP000075883    UP000075884    UP000000673    UP000075900    UP000027135    UP000075886    UP000030765    UP000076408    UP000235965    UP000095301    UP000192221    UP000095300   

PRIDE

H9JNW2   

Pfam

PF13855   LRR_8        + More
PF01582   TIR
PF13676   TIR_2
PF13306   LRR_5

Interpro

IPR003591   Leu-rich_rpt_typical-subtyp        + More
IPR000157   TIR_dom       
IPR001611   Leu-rich_rpt       
IPR032675   LRR_dom_sf       
IPR035897   Toll_tir_struct_dom_sf       
IPR026906   LRR_5       

SUPFAM

SSF52200   SSF52200       

Gene 3D

3.40.50.10140     3.80.10.10    

ProteinModelPortal

H9JNW2   A0A2A4K1U2   A0A2H1WD12   A0A2W1BAS6   A0A3S2LX39   A0A346RAG3   + More
A0A194RQS6   A0A2W1B918   A0A194PS42   A0A194PSH5   A0A212FDR6   A0A1J1IW82   A0A1S4FZJ5   Q16J46   B4MLK0   A0A182UC86   A0A182GA40   Q8WRE3   Q5TWL7   B4KY26   A0A182L3J3   A0A1Q3FJ76   A0A182I6U3   A0A182WWK7   A0A182UXY0   A0A182GZQ1   A0A1Q3FJA2   B4LGE3   A0A182KAK8   A0A182P120   A0A182FGA8   A0A182WHW3   A0A182MKR3   A0A182NLR7   W5JBQ4   A0A182R9T3   A0A067RC49   A0A182Q511   A0A084WRN1   A0A182Y334   A0A2J7PRY1   A0A1I8M983   A0A1W4VTK6   W5JUT4   A0A1I8P2A3   A0A1I8P2C1   A0A0P5M134   A0A0P6HT22   A0A0P6C638   Q16F50  

PDB

1FYV     E-value=6.24935e-28,     Score=311

KEGG

105842301    no KO assigned | (RefSeq) toll-like receptor 3

GO

GO:0016021   GO:0007165   GO:0004888   GO:0045087   GO:0050829   GO:0042116   GO:0050707   GO:0002755   GO:0046696   GO:0001875   GO:0034142   GO:0002224   GO:0006954   GO:0005887   GO:0009986   GO:0005886   GO:0005515   GO:0042626   GO:0016887   GO:0019829   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

651

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

26.78955

Exp number, first 60 AAs:

0.00449

Total prob of N-in:

0.34203

inside

1  -  446

TMhelix

447  -  466

outside

467  -  651

 

 

Pi

158.491305

Theta

154.530565

Tajima's D

0.230945

CLR

469.903969

CSRT

0.434228288585571

Interpretation

Uncertain