Gene

KWMTBOMO14076  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011380

Annotation

PREDICTED:_RNA-binding_protein_26_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr23(+):17391502-17424214      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.196

CDS

ATGTTAATAGAAAATCCGGACGCTTTCAAATCGTGGTTGACGTCCATATTGGAACCACTTTGTGATGCAGATCCAGCAGCCCTCGCCAAGTATGTTTACGCTCTTGTCAAGAAGGACAAACCCGTGGACGAGCTCCGTGAGGTGATGATGGATCAACTCGATGTGTTTCTCCAGCAGGAAACCAAACCATTTGTTGAAATGCTGTTTGGTTCCCTTGAGAAACAAGAGTATCTGAAACATAGTCGGGAGCCAGAGAAGCCTACTCCTCCACTACCAGAACCTGAGAAAGAACCCCAGTTGGAGAACCATGCTACCAATGGGCCTGCTCCTCCACTCCGGCACCGCGTGGTCGTACCTAGGGCTGCGCCTCCGACCGAGCAGACACTCGTAAAGGTTCTGCCGACTGAGCTGCTGGAGGAGCCTGTATACCAACCTCCGCGGAGAAGAGAGAGGCGCGCTGATTCTCTACGTGACAAAGATGATCGTCGAAGACGTCGATCTCGGTCGTGGGAGAGAAGAAACCGTCCTCGAAGACACCTCAGGGAAAACGAGCATGATGGTAAACGGGTCCGACCCTCAAGGTCTCCTTCTCCTCGAAGGTATAGAAACAGAAGTCCACCTCCAGCAGACAGAGCTAGCAGGTCTAGATCAAGGTCCCCAGTGCTGACCCGCGACAGGGACCACGACAGAGAGAGGGACAGACTGCGCGTGGTGCGTGAAATAGAAAGAGATAGAATATCGAGAGATAGAGAACACAGAGATACGATCTCAAGATCAAGAGACCGGGATAGGTCTCGCGATAGGTCCCGGGAGAGATCTCGCGATAGATCCCGAGGTTCACTATCGCCCATACCGGATACGAGGCTAGACCATAAAGACGGCTACAAGCGGAGATGTAGAGATTTCGATGAGAAAGGATACTGCATGCGAGGAGACCTCTGCTCATGGGACCATGGCGCCGACCCGCTGGTGCTGGAAGACGCCGCTTTGTCCAGGGTCATGCTGCCCGCTCACGTGCCTGAATACAACCCCCTGGCCCCGGACATCTGGTGCGGGGGAGCCTTCCCCGGGTACCCACCGCCGCACCCGCCGCGGGAGCTCATACCCATACCAAGAGTAAGACATGAAGCTCCACCAATGGCGGGTATGCTCCCGCCCCGACCTAGACATCCCGCTCCCAACAAGAAACCCTTCGACTACAATAGATTAGGCCCGGCCCGTCCCCCGCTACCGGCCAACGCTGCCAACTGTTCATTGGAGGTGAAGAAAGTGCCGCGCGGACTGAACGATATAACGCATTTGAACAATCATTTCTGTAAATTCGGAAAGATTGTTAATATACAGGTTTGCTATGAAGGAGATCCAGAATCAGCTTTAATCACATTCTCGACTCCGACAGAAGCCAACATAGCATATAAAAGCACAGAGGCTGTACTCAACAATAGATTTATCAAAGTCTTCTGGCACAACCCTGAGAACAAACAAGAAAACACTGCTCCGGCCGGTCAACAACAAAACAAGCAGACGGACAGGAACTCGCAGTTTACCTCCTCGCACAACAAAGTGCTAATAAACAGAGACAACATTAAAGCTACACAGGAAAATAAACTTCAGAATGAAAAGAACGAGAAGGAAACCGCAAACGGCCAAGAACCCAAAAAGGAACAAATAAAACCATTCGAGAAGACCAAACAAGTAATGGAGATGTACAAACGAGCCCAGTCGCTGCTGGAGACACAGCTGCAGCAGCAAGTGTTGCTGATCAAGAAACTGGAATCTGGCAACATGACTCCGGCTCAGAGGACAGCTCTTCTAGACGCCATTAATTCAGCTCAGGAGGGCATCGAAAAGCTGAGGAAAGAGCTGGTGGCTTACAATGGAGTCATCAAACAACTGCAGGCGAACTCGCATAAGAAGCCGAAAACGAGAGAAGAGGCCCAGAAGGAGATCCTTGATGCTGAACTGGATATGTTCACTAAACAGCAGGAAGGACAAGACGTGACGGACCTAGCCAAGAAGGTGGCTGAACTAAGAAAACAAATGTCGATACAGTTCCCTACTCATCCGACGGCGAGGAGAGTTCATGCTAGGGGCGGCAGGTTCAACACCCCAACCCGCTTCACCCGGGGCGCTATGTCCGGGAGCAGAGCGTTTAGCGTCAACCAGACCGTGGACCACAGACCCCGGGCGTTGCTGATATCCGGTTTCGAAGCGGATGAACTCGATACGCTCTTGCAACACTTTGCTCAATACGGCGAAGTTCTGAGCAAACATGTGGACATGTCGGTCCCCCAGCTGACGCTGCTGTACAAGGTGCGCGCGCACGCCGAGCAGGCCGCCGCGCACGGCCGCCACTGCAGCGACCGCACGCTCTCCATAACGTGGGTGACGAGCGTCAATAAGACCCTGCACAACAACATCGTGCACTCGAACGCGAACTCAGAGTCCAGGGACGGGCCCGCGCGCAACGGGGGTCCCGCGCCCCCCGTCCGCGTCGACCACAACGACCTCAACAAGGACGAGCAACCAGCGCAAGAGCAACCCGAGGAGAGCATACTCCGGTTCGACGAGGAGGAGGAGGAGGAGGCCGAGGAAGACCGCTCGTGGAGACGTTGA

Protein

MLIENPDAFKSWLTSILEPLCDADPAALAKYVYALVKKDKPVDELREVMMDQLDVFLQQETKPFVEMLFGSLEKQEYLKHSREPEKPTPPLPEPEKEPQLENHATNGPAPPLRHRVVVPRAAPPTEQTLVKVLPTELLEEPVYQPPRRRERRADSLRDKDDRRRRRSRSWERRNRPRRHLRENEHDGKRVRPSRSPSPRRYRNRSPPPADRASRSRSRSPVLTRDRDHDRERDRLRVVREIERDRISRDREHRDTISRSRDRDRSRDRSRERSRDRSRGSLSPIPDTRLDHKDGYKRRCRDFDEKGYCMRGDLCSWDHGADPLVLEDAALSRVMLPAHVPEYNPLAPDIWCGGAFPGYPPPHPPRELIPIPRVRHEAPPMAGMLPPRPRHPAPNKKPFDYNRLGPARPPLPANAANCSLEVKKVPRGLNDITHLNNHFCKFGKIVNIQVCYEGDPESALITFSTPTEANIAYKSTEAVLNNRFIKVFWHNPENKQENTAPAGQQQNKQTDRNSQFTSSHNKVLINRDNIKATQENKLQNEKNEKETANGQEPKKEQIKPFEKTKQVMEMYKRAQSLLETQLQQQVLLIKKLESGNMTPAQRTALLDAINSAQEGIEKLRKELVAYNGVIKQLQANSHKKPKTREEAQKEILDAELDMFTKQQEGQDVTDLAKKVAELRKQMSIQFPTHPTARRVHARGGRFNTPTRFTRGAMSGSRAFSVNQTVDHRPRALLISGFEADELDTLLQHFAQYGEVLSKHVDMSVPQLTLLYKVRAHAEQAAAHGRHCSDRTLSITWVTSVNKTLHNNIVHSNANSESRDGPARNGGPAPPVRVDHNDLNKDEQPAQEQPEESILRFDEEEEEEAEEDRSWRR

Uniprot

A0A194PYP9   A0A3S2NQY9   A0A194RQK0   A0A0A9Y5X3   A0A0A9Y9Z8   A0A0A9Y8F1   + More
A0A0A9VWI2   A0A0A9Y9Z4   A0A0A9Y8Y8   A0A146MAV8   A0A0A9Y5W8   A0A1B6IP36   A0A146L0V4   A0A0A9YDF0   A0A0A9Y3C4   A0A0A9Y7G6   A0A0A9Y8Y2   A0A1B6IGE8   A0A1B6CSK3   A0A1B6DMT3   A0A1B6CYB4  

Pubmed

26354079    25401762    26823975   

EMBL

KQ459593    KPI96280.1    RSAL01000135    RVE46269.1    KQ459875    KPJ19674.1    + More
GBHO01016040    JAG27564.1    GBHO01015163    JAG28441.1    GBHO01015165    JAG28439.1    GBHO01045046    JAF98557.1    GBHO01015168    JAG28436.1    GBHO01016041    JAG27563.1    GDHC01001755    JAQ16874.1    GBHO01016045    JAG27559.1    GECU01019014    JAS88692.1    GDHC01018079    JAQ00550.1    GBHO01016044    JAG27560.1    GBHO01016042    JAG27562.1    GBHO01016043    GBRD01003543    JAG27561.1    JAG62278.1    GBHO01016046    GBRD01003544    JAG27558.1    JAG62277.1    GECU01021718    JAS85988.1    GEDC01020772    JAS16526.1    GEDC01010320    JAS26978.1    GEDC01018812    JAS18486.1   

Proteomes

UP000053268    UP000283053    UP000053240   

Pfam

PF01480   PWI        + More
PF00642   zf-CCCH

Interpro

IPR035979   RBD_domain_sf        + More
IPR000571   Znf_CCCH       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR002483   PWI_dom       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF54928   SSF54928        + More
SSF57667   SSF57667       

Gene 3D

3.30.70.330    

ProteinModelPortal

A0A194PYP9   A0A3S2NQY9   A0A194RQK0   A0A0A9Y5X3   A0A0A9Y9Z8   A0A0A9Y8F1   + More
A0A0A9VWI2   A0A0A9Y9Z4   A0A0A9Y8Y8   A0A146MAV8   A0A0A9Y5W8   A0A1B6IP36   A0A146L0V4   A0A0A9YDF0   A0A0A9Y3C4   A0A0A9Y7G6   A0A0A9Y8Y2   A0A1B6IGE8   A0A1B6CSK3   A0A1B6DMT3   A0A1B6CYB4  

KEGG

101739423    K13192 RNA-binding protein 26 | (RefSeq) RNA-binding protein 26

GO

GO:0003723   GO:0006397   GO:0046872   GO:0000166   GO:0003676   GO:0030246   GO:0019829   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

871

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00024

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.00003

outside

1  -  871

 

 

Pi

196.309062

Theta

169.934117

Tajima's D

0.734601

CLR

1.777598

CSRT

0.584570771461427

Interpretation

Uncertain