SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14073  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA011223
Annotation
PREDICTED:_acetyl-CoA_carboxylase_isoform_X1_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.775
 

Sequence

CDS
ATGAGCCATATGATTATTTGTGATAGTTTCTTCAAAACGATTAGTAGTTTTTGTTTGATTTTAGGGTACTGCCTGCCCGAGCCGTACAACACGCCGCGACTCCGCGAGGTGGTGGAGAAGTTTATGCAGAGTCTACGGGACCCCTCGCTGCCCCTGCTGGAGCTTCAGGAGGTGCTGTCGTCAACCTCGGGCCGGATCCCCATAGCGGTGGAGAAGAAGGTCCGCAAGCTGATGGCGCTGTACGAGCGGAACATCACCAGCGTGCTGGCGCAGTTCCCCAGCCAGCAGATAGCCAGCGTCATCGACCACCACGCGGCGTCGCTGCAGAAGAGGTCGGACCGCGACGTGTTCTTCATGAGCACGCAGGCGCTGGTGCTGCTGGTGCAGCGGTACAGGAACGGGATCAGAGGTAGAATGAAGGCGGCCGTGCACGATCTGCTCAAGCAGTACTTCCAGGTCGAGAGCAACTTCCAGCTGGGCTCGTACGACAAGTGCGTGGTGGCCCTCCGCGAGCGCCACAAGGACGACATGCAGGCCGTCGCCAACATGATCTTCTCCCACAACCAGGTCGCCAAGAAGAATCTGCTGGTGACGCTGCTGATAGACCACCTGTGGTCCAATGAGCCAGGGCTGACGGACGAGCTGGCGGCCACGCTGAACGAGCTGACCTCCCTCCACCGAGCTGAGCACAGCCGCGTCGCGCTACGAGCGAGACAGGTGCTGATCGCGGCGCACCAGCCCGCCTACGAGCTCCGCCACAACCAGATGGAGTCGATATTCCTGTCGGCGGTGGACATGTACGGGCACGACTTCCACCCGGAGAACCTGCAGAAGCTGATCCTGTCGGAGACCTCGATATTCGATATACTGCACGACTTCTTCTACCATATGAACGCAGCGGTTTGCAACGCAGCTCTGGAGGTGTACGTGCGTCGCGCCTACACGTCCTACGACATCGCCTGTCTCCAACACCTGGCGTTGTCTGGCGAGCTGGGAGTGGTACATTTCCAGTTCATCCTGCCCACAGGACACCCTAACCGGATACCGCTGTCCCAATCGGAGATTGAGCTCTCAGCGAGCGAGGACAAGGTCGGGATACCGGCCGAGCTGAGCGCAGCCGCCATGCGCAAGTGTCACCACCGGACCGGAGCGCTGGCGGCGTTCCTCTCGTTCGACCAGTTCGTGCAGTACGCTGATGAGCTTTTGGACCTGGTGCACGACTTTGCTAGTTCGGCTTCGGTCAGGAAGGAGGATCTCGCGGCGCTGCAGGAGGGCAGCGAGAGCCGCGACAGCACGAGCATCAACGTCGGCTTAGACTACAAGCAGAACATCATCGACGAGGAGGTGCCGTTGGAACCAATCCACATCCTGATGATCGGGGTGAGGGACAACGGGGAGGCGGACGACAGCGCCGTCTCACGTCGCTTCGGGAACTTCTGCAGGGCCCACCGGCACGAGCTGCATCACAAGCGGATCCGAAGAATCACCTTTATGCTGCTCATCAAACGTCAGTTCCCCAAGTTCTTCACGTACCGCGCCCGCAACGACTTCACCGAGGACACGATCTACCGCCACCTGGAGCCGGCCTCCGCCTTCCAGCTGGAGCTGTACCGGATGAGGAGCTACGAACTCGAAGCGCTGCCGACCAGCAACCAGAAGATGCACTTGTACCTGGGGAAGGCGAAGGTGAAGAAAGGCCAGGAGGTGACGGACTACAGGTTCTTCATACGCTCCATCATCAGACACCAGGATTTGATCACGAAGGAGGCAAGCTTTGAATATCTGCAGAATGAAGGCGAAAGGGTGCTGCTGGAAGCCATGGATGAACTGGAGGTGGCGTTCTCTCACCCGCTAGCGAAGCGGACCGACTGCAACCACATATTCCTGAACTTCGGTCCGACCGTCATCATGGACCCGGCCAAGATCGAGGAGTCGGTGCTCGGGATGGTCATGCGGTACGGCCCCAGGCTGTGGAAGCTGCGCGTGCTGCAGGCGGAGATACGGTTCACGCTTAGGATCGGTCCGGGGGCGCCCACCAAGAACATCCGTCTCTGTCTGTCCAACGGCTCCGGGTATTCACTCGACGTGTACACGTACGAGGAGATATCCGACCCGAAGATCGGTGTTATCATGTTCCACTCGTTCGGGCCGCGCCAGGGACCGATGCACGGGCTGCCCATCTCCACGCCCTACCTCACCAAGGACTACCTGCAGCAGAAGAGATTCCTGGCAACATCGCAAGGAACTACATACGTTTACGACATTCCGGATATGTTCCGTCAGGTTGTGGAGAAGAGGTGGAGAGATTGCATCGAAGACGGCACCGTCGATGGTCCGCTGCCGGACACCGTGATGTCGTTCGTGGAGCTGGTGGTGGAGCCCGACGGCGAGCGACGGGTCGTGGAGGTCACGCGCCTCCCCGGACAGAACAACGTCGGGATGGTAGCTTGGCGCCTGACGCTGTTCACGCCCGAGTGCCCCGAGGGTCGGGACATCATTCTCATCGCGAACGACCTCACGCACTACATGGGTTCGTTCGGGCCCCAGGAGGACTGGGTGTACTACAAGGCGTCGCAGTACGCGAGAGAACTCAAGATACCGAGGATTTACGTGAGCGTGAACTCCGGGGCCCGCATCGGAGTCGCCGAGGAGGTGAAGGCGGAGTTCAGCGCGGCGTGGCTGGAGGCGGAGCGCCCGGAGCGCGGCTTCCGGTACCTGTACCTCAGCCCCCCGGCCTACGCCCGGCTGGCGCCGCTCGGGGCGGTCAAGGCGGAGCTCATCGAAGACGAGGGGGAGGCCAGATACAAGATCACGGATATTATCGGCAAGGAGGACGGGCTGGGAGTGGAGTGTCTCCGGGACGCGGGGCTCATCGCCGGCGAGACCGCGCAGGCCTACGAGGACATCGTCACCATATCCATCGTCACGTGCCGGGCCATCGGCATCGGGTCCTACGTTGTGAGATTGGGTCATAGAGTGATACAAGTGGAGAGTTCATATATAATCCTGACCGGTCACGCCGCGCTGAACAAGGTCCTCGGGCGGGCGGTGTACGCCAGCAACAACCAGCTGGGAGGAGTCCAGATCATGCACCACAACGGAGTCTCCCACGCGGTGGCGCCCTCCGACCTGGACGCCGTCCGGACTGCGGTCAACTGGCTGGCTTTCGTGCCCAAGGACAAACTGAGCATGGTGCCGATAATGCGCTGCTCCGACCCCGTGGAGCGGCCCGTGCTGTGGGTGCCGCCGCGGGGCCCGCACGACCCCCGCCTCATGCTCAACGGGGACGGCGCCAGGCCAGGGTTCTTCGACCACGGCAGCTTCGACGAGATCATGGGCCCCTGGGCGCAGACTGTCGTCACCGGTCGAGCTCGCCTGGGTGGCATCCCGGTTGGAGTGATCGCCGTGGAAACCAGAACGGTGGAGCTGACGTTGCCCGCCGACCCTGCCAACCTGGACTCTGAAGCCAAGACCCTGCAGCAAGCCGGACAGGTCTGGTTCCCGGATTCCGCATACAAGACGGCGCAGGCGATTAACGACTTCTCCAGGGAGAATTTGCCCATCATCATATTCGCCAATTGGCGTGGCTTCAGCGGCGGACAGAAAGACATGTACGAGCAGATCCTGAAGTTCGGCGCGGAGATCGTGCGGGCGCTGCGGGGGCCGGGGGGGCCGGTGCTGGTGTACGTCCCCCCGGGGGCCGAGCTGCGGGGGGGTGCGTGGGCGGTGGTGGACCCCAGCGTCAACAGCGCGCGCATGGAGATGTACGCCGACCCCGAAGCCAGAGGCGGTGTTTTAGAAGCGGAGGGCATAGTCGAAGTTAAATTCAAGCAGCGGGACATACTCAAGACCATGCACCGGCTAGACCCTCAACTCCTCAGGCAAACAGCCAGGATATCAGAACTGAAGGAGCAAATCAAAGAAATCTCAAAGAACTTCGACAGGCGCGGCTCCATTGATGACGTCCTGGTTAAAACCGACATTGGAAAAGCTGCCGAAGGTCGAGTCCGGGAGCTTGAGACCGAACTGCTGTCAGCCGAGAAGGCTGTAAAGGCTCGCGAGAAAGAACTCGGTCCCATCTACCACGAGATAGCTGTACAGTTCGCAGAGCTGCACGACACCGCCGAGAGGATGCTGGAGAAGGGCTGCATCTCGGACATAATCCCGTGGCGCGAGTCCCGGCGGCTGCTGTACTGGCGGCTGCGGCGGCTGCTGCTGCAGGGCGAGCAGGAGCGGCGCGTGCAGGCGGCCGGACAGCACGCGCCGCCCGCGCCGCAGCACCAGGGGCTCGCCGCGCCCACGCTGCGGAGGTGGTTCGCCGAGGACCGGGGGGAGTTACAGTCCCACCAGTGGGAGCACGACAACGAGGCCGTGTGCCGGTGGCTGGAGGAGCAGGCCGGCGACGTCGACTCCGTGCTGGAGAAGAACCTCCGAGCCATCAGGCAGGACGCCATACTGCAGGCCGCCAACGCTCTAGTCGCGGAACTGACGCCGTCGCAGAGGTCGGAGTTCGTCAGGAAAATATCCGCTTTGGATATAGAACAATAA
Protein
MSHMIICDSFFKTISSFCLILGYCLPEPYNTPRLREVVEKFMQSLRDPSLPLLELQEVLSSTSGRIPIAVEKKVRKLMALYERNITSVLAQFPSQQIASVIDHHAASLQKRSDRDVFFMSTQALVLLVQRYRNGIRGRMKAAVHDLLKQYFQVESNFQLGSYDKCVVALRERHKDDMQAVANMIFSHNQVAKKNLLVTLLIDHLWSNEPGLTDELAATLNELTSLHRAEHSRVALRARQVLIAAHQPAYELRHNQMESIFLSAVDMYGHDFHPENLQKLILSETSIFDILHDFFYHMNAAVCNAALEVYVRRAYTSYDIACLQHLALSGELGVVHFQFILPTGHPNRIPLSQSEIELSASEDKVGIPAELSAAAMRKCHHRTGALAAFLSFDQFVQYADELLDLVHDFASSASVRKEDLAALQEGSESRDSTSINVGLDYKQNIIDEEVPLEPIHILMIGVRDNGEADDSAVSRRFGNFCRAHRHELHHKRIRRITFMLLIKRQFPKFFTYRARNDFTEDTIYRHLEPASAFQLELYRMRSYELEALPTSNQKMHLYLGKAKVKKGQEVTDYRFFIRSIIRHQDLITKEASFEYLQNEGERVLLEAMDELEVAFSHPLAKRTDCNHIFLNFGPTVIMDPAKIEESVLGMVMRYGPRLWKLRVLQAEIRFTLRIGPGAPTKNIRLCLSNGSGYSLDVYTYEEISDPKIGVIMFHSFGPRQGPMHGLPISTPYLTKDYLQQKRFLATSQGTTYVYDIPDMFRQVVEKRWRDCIEDGTVDGPLPDTVMSFVELVVEPDGERRVVEVTRLPGQNNVGMVAWRLTLFTPECPEGRDIILIANDLTHYMGSFGPQEDWVYYKASQYARELKIPRIYVSVNSGARIGVAEEVKAEFSAAWLEAERPERGFRYLYLSPPAYARLAPLGAVKAELIEDEGEARYKITDIIGKEDGLGVECLRDAGLIAGETAQAYEDIVTISIVTCRAIGIGSYVVRLGHRVIQVESSYIILTGHAALNKVLGRAVYASNNQLGGVQIMHHNGVSHAVAPSDLDAVRTAVNWLAFVPKDKLSMVPIMRCSDPVERPVLWVPPRGPHDPRLMLNGDGARPGFFDHGSFDEIMGPWAQTVVTGRARLGGIPVGVIAVETRTVELTLPADPANLDSEAKTLQQAGQVWFPDSAYKTAQAINDFSRENLPIIIFANWRGFSGGQKDMYEQILKFGAEIVRALRGPGGPVLVYVPPGAELRGGAWAVVDPSVNSARMEMYADPEARGGVLEAEGIVEVKFKQRDILKTMHRLDPQLLRQTARISELKEQIKEISKNFDRRGSIDDVLVKTDIGKAAEGRVRELETELLSAEKAVKAREKELGPIYHEIAVQFAELHDTAERMLEKGCISDIIPWRESRRLLYWRLRRLLLQGEQERRVQAAGQHAPPAPQHQGLAAPTLRRWFAEDRGELQSHQWEHDNEAVCRWLEEQAGDVDSVLEKNLRAIRQDAILQAANALVAELTPSQRSEFVRKISALDIEQ

Summary

Cofactor
biotin
EMBL
KP237867    AKD01720.1    KP237869    AKD01722.1    KR140280    ALS92678.1    + More
KU755518    ARD71228.1    KT261731    ALJ30271.1    JX989149    AGR49308.1    KJ622074    AID66639.1    BABH01009810    BABH01009811    BABH01009812    BABH01009813    KQ971345    EFA05436.2    APGK01036619    APGK01036620    KB740941    ENN77580.1    DS231905    EDS45294.1    LJIG01022603    KRT79690.1    DS235758    EEB16478.1    GFTR01008955    JAW07471.1    GANO01001823    JAB58048.1    GEDC01006738    JAS30560.1    AAAB01008900    EAA09449.5    EDO64101.1    APCN01002864    GEDC01019899    JAS17399.1    GFDL01006400    JAV28645.1    GFDL01006385    JAV28660.1    GFDL01006399    JAV28646.1    GFDL01006383    JAV28662.1    GBHO01015290    GBHO01015283    GBHO01000038    JAG28314.1    JAG28321.1    JAG43566.1    GBHO01015291    GBHO01015289    GBHO01015287    GBRD01015639    GBRD01015638    JAG28313.1    JAG28315.1    JAG28317.1    JAG50187.1    AXCN02000996    GBHO01015292    GBHO01015286    GBHO01015282    JAG28312.1    JAG28318.1    JAG28322.1    CH477385    EAT42106.1    GEDC01000781    JAS36517.1    GEDC01012204    JAS25094.1    GGFL01002277    MBW66455.1    GGFM01006425    MBW27176.1    GGFL01002257    MBW66435.1    GGFL01002278    MBW66456.1    GGFK01000317    MBW33638.1    ADMH02001867    ETN60739.1    UFQS01000700    UFQT01000700    SSX06284.1    SSX26638.1    JXUM01074332    JXUM01074333    JXUM01074334    KQ562823    KXJ75056.1    GGFJ01000079    MBW49220.1    SSX06283.1    SSX26637.1    CH933808    KRG04522.1    SSX06286.1    SSX26640.1    GGFL01002723    MBW66901.1    GGFL01002666    MBW66844.1    KRG04521.1    GGFL01002722    MBW66900.1    UFQS01002460    UFQT01002460    SSX14095.1    SSX33512.1    GGFK01000365    MBW33686.1    KRG04524.1    KRG04523.1    EDW09202.1    JRES01000182    KNC33542.1    KRG04520.1    GDKW01001157    JAI55438.1    GGFK01000322    MBW33643.1    GGFL01002275    MBW66453.1    CM002911    KMY92156.1    KB632409    ERL95164.1    CP012524    ALC41032.1    KMY92152.1    KMY92157.1    GFDF01001889    JAV12195.1    CH940648    EDW61570.2    KMY92153.1    CM000157    EDW89272.2    CH954177    EDV59596.1    KMY92154.1    KRJ98344.1    KRJ98343.1    KMY92151.1    KMY92155.1    GFDF01001890    JAV12194.1    AE013599    AAF59155.2    KRJ98339.1    CH480816    EDW46857.1    KQS70901.1    KQS70904.1    KQS70905.1    AY119502    AAF59156.2    AAM50156.1    ABV53726.1    AHN55975.1    AHN55976.1    KQS70907.1   
Pfam
PF01039   Carboxyl_trans        + More
PF00364   Biotin_lipoyl
PF08326   ACC_central
PF00289   Biotin_carb_N
PF02785   Biotin_carb_C
PF02786   CPSase_L_D2
PF03645   Tctex-1
Interpro
IPR011053   Single_hybrid_motif        + More
IPR013537   AcCoA_COase_cen       
IPR011763   COA_CT_C       
IPR000089   Biotin_lipoyl       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR011762   COA_CT_N       
IPR001882   Biotin_BS       
IPR034733   AcCoA_carboxyl       
IPR005479   CbamoylP_synth_lsu-like_ATP-bd       
IPR016185   PreATP-grasp_dom_sf       
IPR011054   Rudment_hybrid_motif       
IPR005482   Biotin_COase_C       
IPR011761   ATP-grasp       
IPR005481   BC-like_N       
IPR013815   ATP_grasp_subdomain_1       
IPR011764   Biotin_carboxylation_dom       
IPR038586   Tctex-1-like_sf       
IPR005334   Tctex-1-like       
SUPFAM
SSF52096   SSF52096        + More
SSF51230   SSF51230       
SSF51246   SSF51246       
SSF52440   SSF52440       
Gene 3D
PDB
6G2H     E-value=0,     Score=4076

Ontologies

Topology

Length:
1515
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.26792
Exp number, first 60 AAs:
0.25254
Total prob of N-in:
0.01289
outside
1  -  1515
 
 

Population Genetic Test Statistics

Pi
246.947637
Theta
158.041137
Tajima's D
2.063888
CLR
0.259158
CSRT
0.890005499725014
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
25044914 PGETVVVSGAAGAVGSHVGQIAK 100.00 9e-13
26280517 WEISAISGIISR 95.65 2e-10
26280517 GEGFRPYYITK 100.00 3e-04
25044914 GGAGAWGDAVPVIR 100.00 3e-04
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