Gene

KWMTBOMO14072

Pre Gene Modal

BGIBMGA011378

Annotation

PREDICTED:_lysosomal_alpha-mannosidase-like_[Bombyx_mori]

Location

Bomo_Chr23(+):17267172-17269496      View in EpiBrowser

Full name

Alpha-mannosidase      

Location in the cell

Nuclear   Reliability : 2.364

CDS

ATGCGAGGTCTTCCACGACATATCCACATCCTTACCCTGGAGCCTTGGAAATCTGGGAGCGTTCTGTTGAGGCTCGAAAACGTATTGGAAGAATCCAGAGATCACCTCAACTCTGAGAACCCCGAGGGGACCACGAGAGCCTCCCACATAACTGTGGACCTACGCAAATTATTCGCCGTCCCAATCAAATTGGCGAGGGAGACGACACTTGCCGCGAATCAGTGGCTGGACGACGCAAGACAGATGGATTGGAGCACTAGGTATGTCTACAGCGGATCTGATGATGGAGTAACTCACGAAGATGGAGTGACCGAAGACTATGATAACAAACAAACACACCAGACGGACGCCGGCTCAGGAACAGATAAATGA

Protein

MRGLPRHIHILTLEPWKSGSVLLRLENVLEESRDHLNSENPEGTTRASHITVDLRKLFAVPIKLARETTLAANQWLDDARQMDWSTRYVYSGSDDGVTHEDGVTEDYDNKQTHQTDAGSGTDK

Cofactor

Zn(2+)

Similarity

Belongs to the glycosyl hydrolase 38 family.

Feature

chain  Alpha-mannosidase

Uniprot

H9JPC4   A0A2H1VKW2   A0A2A4IXJ1   A0A0N0PAB2   A0A2W1BMA0   A0A194PYQ5   + More
A0A194RQK5   A0A0C9RCQ8   A0A0C9Q6G3   N6ULX5   A0A2P8Z138   D6WWZ0   A0A139WD78   D6WWY9   D6WI18   A0A182NTB7   U4TT01   U4TTZ9   S4RY66   D6WI17   E2ABS8   A0A1D2N6K1   A0A0N1IAW8   A0A3S3PUW6   A0A1W4WS90  

EC Number

3.2.1.-

Pubmed

19121390    26354079    28756777    23537049    29403074    18362917    + More
19820115    20798317    27289101   

EMBL

BABH01009810    ODYU01002940    SOQ41072.1    NWSH01004815    PCG64677.1    KQ459002    + More
KPJ04400.1    KZ150153    PZC72813.1    KQ459593    KPI96285.1    KQ459875    KPJ19679.1    GBYB01014359    JAG84126.1    GBYB01009698    JAG79465.1    APGK01026882    KB740648    ENN79712.1    PYGN01000246    PSN50204.1    KQ971361    EFA08768.2    KYB25900.1    EFA08767.1    KQ971332    EEZ99703.1    KB630779    ERL83857.1    KB631357    ERL84262.1    EEZ99704.1    GL438356    EFN69105.1    LJIJ01000182    ODN00899.1    KQ458725    KPJ05356.1    NCKU01002906    NCKU01002905    RWS08571.1    RWS08573.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000019118    UP000245037    + More
UP000007266    UP000075884    UP000030742    UP000245300    UP000000311    UP000094527    UP000285301    UP000192223   

PRIDE

H9JPC4   

Pfam

PF07748   Glyco_hydro_38C        + More
PF01074   Glyco_hydro_38N
PF09261   Alpha-mann_mid
PF17677   Glyco_hydro38C2

Interpro

IPR037094   Glyco_hydro_38_cen_sf        + More
IPR027291   Glyco_hydro_38_N_sf       
IPR028995   Glyco_hydro_57/38_cen_sf       
IPR011682   Glyco_hydro_38_C       
IPR013780   Glyco_hydro_b       
IPR011013   Gal_mutarotase_sf_dom       
IPR011330   Glyco_hydro/deAcase_b/a-brl       
IPR000602   Glyco_hydro_38_N       
IPR015341   Glyco_hydro_38_cen       
IPR041147   GH38_C       

SUPFAM

SSF88713   SSF88713        + More
SSF88688   SSF88688       
SSF74650   SSF74650       

Gene 3D

1.20.1270.50     2.60.40.1180     3.20.110.10    

ProteinModelPortal

H9JPC4   A0A2H1VKW2   A0A2A4IXJ1   A0A0N0PAB2   A0A2W1BMA0   A0A194PYQ5   + More
A0A194RQK5   A0A0C9RCQ8   A0A0C9Q6G3   N6ULX5   A0A2P8Z138   D6WWZ0   A0A139WD78   D6WWY9   D6WI18   A0A182NTB7   U4TT01   U4TTZ9   S4RY66   D6WI17   E2ABS8   A0A1D2N6K1   A0A0N1IAW8   A0A3S3PUW6   A0A1W4WS90  

PDB

1O7D     E-value=1.09663e-06,     Score=119

KEGG

101738761    K12311 lysosomal alpha-mannosidase [EC:3.2.1.24] | (RefSeq) lysosomal alpha-mannosidase-like

PATHWAY

00511    Other glycan degradation - Bombyx mori (domestic silkworm)
04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0006013   GO:0004559   GO:0030246   GO:0046872   GO:0003824   GO:0005975   GO:0006517   GO:0005774   GO:0016798   GO:0008152   GO:0019829   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

Length:

123

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

4e-05

Total prob of N-in:

0.16047

outside

1  -  123

 

 

Pi

189.606776

Theta

145.554399

Tajima's D

0.883765

CLR

0.336324

CSRT

0.620568971551422

Interpretation

Uncertain