Gene

KWMTBOMO14050  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA011372

Annotation

glia_maturation_factor_beta_[Bombyx_mori]

Location

Bomo_Chr23(+):16864913-16868358      View in EpiBrowser

Full name

Glia maturation factor      

Location in the cell

Cytoplasmic   Reliability : 2.354 Nuclear   Reliability : 2.018

CDS

ATGTCAGCACAAAACGTAAACGTCTGTGATATTGGTGATGATGTAAAGGAAGTCCTGAAAAAGTTTCGTTTCCAGAAACACACTTCCAATTCTGCTCTTATTTTAAAGGTGAATAGAGAAAAACAAGTCCTAGAAGTTGATGAGGAGCTGGAGAGTGTTGAGCTTGAAGAACTACAGGATATTCTGCCGTCCCATCAGCCGAGATTCATAGTTTACAGCTACAAAATGGAGCACAGTGACGGTCGGACGTCATTTCCGATGTGTTTTATATTCTACACACCCAGAGACGCACATATGGAGCTGCAAGTTATGTACGCGGGCACACAGAGGGCGCTGGCGGCCACCGTCGGAGCCCCGAGACTGCTCGAAGTCCGGGAGATAGACGAGCTGACCTCGGAATGGCTCGAAGAGAAACTGAGAAAATAA

Protein

MSAQNVNVCDIGDDVKEVLKKFRFQKHTSNSALILKVNREKQVLEVDEELESVELEELQDILPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVREIDELTSEWLEEKLRK

Similarity

Belongs to the actin-binding proteins ADF family. GMF subfamily.

Uniprot

H9JPB8   Q1HPS3   A0A2H1VRU8   A0A194PSC7   I4DQ53   A0A2W1BMA9   + More
A0A1E1VZ42   A0A2A4JXC0   A0A212EK58   S4PRZ2   A0A2S2Q1T9   A0A2H8TUT9   A0A2S2NZN4   J9JYJ7   W8BTT5   A0A1B6LI11   A0A1B6CIG1   A0A0A1WK51   A0A0K8W601   A0A034VTR4   A0A1B0FH67   A0A232FHE8   A0A0A9YIS6   A0A1A9Y5B1   A0A1A9UR02   A0A1B0C031   A0A1B0A3X8   A0A1B6GAN8   K7J0R4   D3TRZ1   T1GBH6   A0A3B0JKY3   A0A0T6ASW8   A0A0M4E9E8   A0A161MRI4   T1P9A1   B4KI18   B4LTD8   Q29NM1   A0A0V0G5Z4   A0A1L8EE25   A0A1I8P0P8   B4I213   B4Q6Z7   Q9VJL6   B4GQM8   B4JAC1   B4NXP8   A0A1B0CNX4   T1DNC8   A0A2M4CTD6   A0A2M3ZB78   A0A2M4AWG5   A0A182F321   A0A1W4VJY0   B4MZY7   R4G3L4   T1IE60   A0A224Y0W6   A0A2M4C303   A0A2M4C3B7   A0A2R7W0W2   A0A1Q3FY14   B3N657   B3MJP2   R4WDL6   A0A069DP79   A0A1L8E3I1   U5EYB5   B0WLA3   A0A1B0CZG1   A0A182JLT5   D6WLE8   A0A182JXB2   A0A182P3D5   A0A182YMU0   A0A182NAQ2   A0A182TJN1   A0A182XKL2   A0A182KYN7   Q7PW80   A0A182HZ00   A0A182QN53   Q16I76   A0A023EG60   A0A1L8E3H4   A0A182RWG9   A0A182VSL3   A0A182V8J2   A0A182GLB8   A0A336K927   A0A0K8SUH9   E0VNZ9   A0A1W4X3H9   A0A336MIW9   A0A1Y1L5E9   A0A1W7RH63   J3S4F0   T1E6F9  

Pubmed

19121390    26354079    22651552    28756777    22118469    23622113    + More
24495485    25830018    25348373    28648823    25401762    20075255    20353571    25315136    17994087    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    23691247    26334808    18362917    19820115    25244985    20966253    12364791    14747013    17210077    17510324    24945155    26483478    20566863    28004739    26358130    23025625    23758969    25727380   

EMBL

BABH01009767    DQ443329    ABF51418.1    ODYU01004071    SOQ43565.1    KQ459593    + More
KPI96341.1    AK403935    BAM20043.1    KZ149971    PZC76068.1    GDQN01011092    JAT79962.1    NWSH01000403    PCG76657.1    AGBW02014309    OWR41902.1    GAIX01014313    JAA78247.1    GGMS01002421    GGMS01008129    MBY71624.1    MBY77332.1    GFXV01005904    MBW17709.1    GGMR01009903    MBY22522.1    ABLF02027280    GAMC01001790    JAC04766.1    GEBQ01016753    JAT23224.1    GEDC01024173    JAS13125.1    GBXI01014863    JAC99428.1    GDHF01005686    JAI46628.1    GAKP01013762    JAC45190.1    CCAG010009633    NNAY01000195    OXU30102.1    GBHO01011540    JAG32064.1    JXJN01023460    GECZ01010279    JAS59490.1    EZ424193    ADD20469.1    CAQQ02393106    OUUW01000006    SPP81473.1    LJIG01022904    KRT78138.1    CP012523    ALC39752.1    GEMB01001550    JAS01609.1    KA645284    AFP59913.1    CH933807    EDW11300.2    CH940649    EDW63908.2    CH379059    EAL34197.3    GECL01002648    JAP03476.1    GFDG01001841    JAV16958.1    CH480820    EDW54570.1    CM000361    CM002910    EDX05205.1    KMY90493.1    AE014134    BT014645    KX531853    AAF53517.2    AAT27269.1    ANY27663.1    CH479187    EDW39900.1    CH916368    EDW03792.1    CM000157    EDW89673.1    AJWK01021065    GAMD01003000    JAA98590.1    GGFL01004434    MBW68612.1    GGFM01004969    MBW25720.1    GGFK01011816    MBW45137.1    CH963920    EDW77922.2    GAHY01002105    JAA75405.1    ACPB03017572    GFTR01002357    JAW14069.1    GGFJ01010533    MBW59674.1    GGFJ01010520    MBW59661.1    KK854227    PTY13352.1    GFDL01002642    JAV32403.1    CH954177    EDV58095.2    CH902620    EDV31381.1    AK417803    BAN21018.1    GBGD01003403    JAC85486.1    GFDF01000807    JAV13277.1    GANO01002103    JAB57768.1    DS231983    EDS30387.1    AJVK01020757    KQ971343    EFA04102.2    AAAB01008984    EAA14756.3    APCN01005836    AXCN02000665    CH478101    CH477434    EAT33968.1    EAT40982.1    EAT40983.1    GAPW01005788    GAPW01005787    JAC07810.1    GFDF01000806    JAV13278.1    JXUM01071490    JXUM01071491    KQ562667    KXJ75360.1    UFQS01000127    UFQT01000127    SSX00148.1    SSX20528.1    GBRD01008947    JAG56874.1    DS235354    EEB15105.1    UFQT01000637    SSX25998.1    GEZM01063920    JAV68909.1    GDAY02000944    JAV50483.1    JU174651    GBEX01001366    AFJ50177.1    JAI13194.1    GAAZ01000966    GBKC01001437    GBKD01000868    JAA96977.1    JAG44633.1    JAG46750.1   

Proteomes

UP000005204    UP000053268    UP000218220    UP000007151    UP000007819    UP000092444    + More
UP000215335    UP000092443    UP000078200    UP000092460    UP000092445    UP000002358    UP000015102    UP000268350    UP000092553    UP000095301    UP000009192    UP000008792    UP000001819    UP000095300    UP000001292    UP000000304    UP000000803    UP000008744    UP000001070    UP000002282    UP000092461    UP000069272    UP000192221    UP000007798    UP000015103    UP000008711    UP000007801    UP000002320    UP000092462    UP000075880    UP000007266    UP000075881    UP000075885    UP000076408    UP000075884    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000075886    UP000008820    UP000075900    UP000075920    UP000075903    UP000069940    UP000249989    UP000009046    UP000192223   

PRIDE

H9JPB8    Q1HPS3    Q9VJL6   

Pfam

PF00241   Cofilin_ADF        + More
PF00383   dCMP_cyt_deam_1

Interpro

IPR011171   GMF        + More
IPR029006   ADF-H/Gelsolin-like_dom_sf       
IPR002108   ADF-H       
IPR001680   WD40_repeat       
IPR037379   WDR74/Nsa1       
IPR036322   WD40_repeat_dom_sf       
IPR006262   Cyt_deam_tetra       
IPR002125   CMP_dCMP_dom       
IPR016193   Cytidine_deaminase-like       
IPR016192   APOBEC/CMP_deaminase_Zn-bd       

SUPFAM

SSF50978   SSF50978        + More
SSF53927   SSF53927       

Gene 3D

3.40.20.10    

CDD

cd11283  ADF_GMF-beta_like

ProteinModelPortal

H9JPB8   Q1HPS3   A0A2H1VRU8   A0A194PSC7   I4DQ53   A0A2W1BMA9   + More
A0A1E1VZ42   A0A2A4JXC0   A0A212EK58   S4PRZ2   A0A2S2Q1T9   A0A2H8TUT9   A0A2S2NZN4   J9JYJ7   W8BTT5   A0A1B6LI11   A0A1B6CIG1   A0A0A1WK51   A0A0K8W601   A0A034VTR4   A0A1B0FH67   A0A232FHE8   A0A0A9YIS6   A0A1A9Y5B1   A0A1A9UR02   A0A1B0C031   A0A1B0A3X8   A0A1B6GAN8   K7J0R4   D3TRZ1   T1GBH6   A0A3B0JKY3   A0A0T6ASW8   A0A0M4E9E8   A0A161MRI4   T1P9A1   B4KI18   B4LTD8   Q29NM1   A0A0V0G5Z4   A0A1L8EE25   A0A1I8P0P8   B4I213   B4Q6Z7   Q9VJL6   B4GQM8   B4JAC1   B4NXP8   A0A1B0CNX4   T1DNC8   A0A2M4CTD6   A0A2M3ZB78   A0A2M4AWG5   A0A182F321   A0A1W4VJY0   B4MZY7   R4G3L4   T1IE60   A0A224Y0W6   A0A2M4C303   A0A2M4C3B7   A0A2R7W0W2   A0A1Q3FY14   B3N657   B3MJP2   R4WDL6   A0A069DP79   A0A1L8E3I1   U5EYB5   B0WLA3   A0A1B0CZG1   A0A182JLT5   D6WLE8   A0A182JXB2   A0A182P3D5   A0A182YMU0   A0A182NAQ2   A0A182TJN1   A0A182XKL2   A0A182KYN7   Q7PW80   A0A182HZ00   A0A182QN53   Q16I76   A0A023EG60   A0A1L8E3H4   A0A182RWG9   A0A182VSL3   A0A182V8J2   A0A182GLB8   A0A336K927   A0A0K8SUH9   E0VNZ9   A0A1W4X3H9   A0A336MIW9   A0A1Y1L5E9   A0A1W7RH63   J3S4F0   T1E6F9  

PDB

1V6F     E-value=2.03767e-29,     Score=315

KEGG

100101176    no KO assigned | (RefSeq) glia maturation factor beta

GO

GO:0034316   GO:0071933   GO:0003779   GO:0030027   GO:0071846   GO:0007298   GO:0048471   GO:0071944   GO:0031344   GO:0005634   GO:0030833   GO:0005730   GO:0042273   GO:0030479   GO:0004126   GO:0008270   GO:0005622   GO:0016021   GO:0000166   GO:0006812   GO:0019829   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR11249   PTHR16038  

Length:

141

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00384

Exp number, first 60 AAs:

0

Total prob of N-in:

0.42188

outside

1  -  141

 

 

Pi

180.292852

Theta

148.716553

Tajima's D

0.667424

CLR

1.099598

CSRT

0.566671666416679

Interpretation

Uncertain