SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14042
Pre Gene Modal
BGIBMGA011367
Annotation
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_2-like_[Papilio_xuthus]
Location
Bomo_Chr23(+):16664743-16698809      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.242
 

Sequence

CDS
ATGTCTTTAGTTTCTTCGTCAAGGCTCGAGGGATCCTCGTCCAGCCTGTCGGGGTCCTACCGGTCTACCTTGACCTCTTCGTCAAGCCTAGACAATCCTTATTGCAGGCCACGTAGTGGCTCATATGCAACTTCAACTCTCCGATCTTACGGAGACACCGTCACCGAATACAGATCCAGATATTCCATCGACAGTAAAGGAGATAAGAAGTCTCTGATAGAATACTCTAGAACTTCCAGAGCTCCAAGCGTGACGGATTCGGACAGCGGTATCTCGTCCAGGCATCGTTCTGACAGAAGCGAGTCCAGGTCTAGAGATATTTCGACGACAAGGAGCGAGAGCGGCAAAACTCTAAGTGACCCCCCGTCTAGAACGAAAAGAAATTTCAGCTCGTCGGCTTTCATGAGCACGGCCGAGCTTTACAAGTTGTATTCGCCCTCGAACTACATACCGTTGACGCAGAGAATACAGCAGCAACAAAAGCTTCAGAATCAGAATTACGGGGAGATATCGAGATCAAAGTCGATCTCGAACGACATCGGTAGACCACCAGCAGCCGACCCATCACGCGCTCTAAGGAAAGCCAGGAACTCGGCTATCGGAACCACATCTGAAAGAACCGAAAGCCGACGTTACAAGGATAGTTCTCCGACGTCGGGCTACACGAAACGAAACTCCCTTACGAACGGAGTGAGGGACAGTAATGGCAATGAACTACCATCTGTGCCCGAGATGCGAAAGAAGTTTGATCCGAAAATGGCCGTCACCAAACTACCCGCAAACGAGAGTAGGTACGCGAGTAGGAGCAACGATGAGCGGTACCTGAATCAACTCAAAGACTGCGAGAACGGTACCGTTGGGTACACGAAGCTACGTCCCAAAGACGACAAACCGGTACCCGTTCATCTGCCTTACGTCAGCCGGAACGGTACGTGCAAATGGGAATCAGGCTCGTCTAGTTCGCGGTCGAATTCCAATTCCGATCTGTCGATTAACAAAACGGCGTCAGAAAGCAGTATTTCGAAGTATCTTCACGATAAACCTAACGGCGCGAGTACGGTCTTAACGTCGAAAATCCCGCCCGACCATTTGACGAGCGTCAAAAGTCAACTAGACCCCAACAATCCAATAGGGAAGATTCTAGAGAAATCGACCGTGATCCAAGTTCAAAATGGGGACGTAGATTATGCGGAACGCAAGAGAATACGCAACAGTCCCGAAACGGTTAACAAATCGAAAGACAACATTAAAAACGACATTGAAAAACAGGTCAAAAGTCAAAGGCACACGTCCGATTTCGCTTCGTACATACAAATATCGCAGCCGATCGCCTCGGGCACGTCCGCGCTAAAGAAAATTGAAAATCACGTTAACGAGGAACCCGTGCCCACAGAGACGCGTAAATCTAGAGCCGGCCTCAAATACATAGATTCCGAGCAAGAGAATGTATCGCTGAACAATGAAATCGAATCTCCAAGTGAGACGGGCTTCGAAAATAAGACCTTCGAACACGAGAATTATCTTAAGAAGCGCTCGGAGAAGAGCGAAGGAGACTCGAAAGAGGAGGATGGAGCCAAGTCCATGGAGACCAGCGTTGAGAGTACTCTGAGCGAATTGACCGAAGATTCTAGTCCTGAAACTCCGTCTACAAGAAGGAAGCTCTTGGATAAAGAATACGATGATGTAAAAGGGGAATTGGCCGGAGGCAAAAGCGGTCCTAGCGGCCTGCGCCGGAGCACCGATCGATCGGAATCACTCTCCGAATCCAGGAATGAGCGGCAGTCAAGTCACACCAGTGGTCTGAACGGCCTCAGGAACATCGGCAACACGTGTTTCATGAATAGCGTCCTCCAGTGCCTGTCGAACACCAAGCCGCTGCTGGAATACGTCTCCGAAGACAAGTATTGCGATGACATCAACACTTCGCTGTCCTGCATGAAGGGGGCCCTCATCAAAGCCTTCGCGACGGTCATCAAGGAGGTGTGGCGCAGTGGTGAGCGTGACGGAGTCGTGAACACCACCGCCCTGAAGTCCCAGGTTCAGAAGTTCGCGCCGCGCTTCATGGGCTATAGCCAGCAGGACGCGCAGGAGTTTCTTCGTTATCTACTGGAAGGGCTCCACGAGGACGTGAACAGGGTCACAGTCAAACCGAAGCCTATATTGACGGAGATCGACGACAATCTAAGCGATTCAGCCAAGGCAGCCGAAGCGTGGAGCCGCTACCTGAGGATGGAGGACAGCCGCGTGGGCGACATCTTCGTGGGGCAGCTGAAGTCGACCCTACGCTGCACCCACTGCAACCACGACAGCGTCACCTTCGATCCATTCTGGGACCTGAGCCTGCCGATTCCGGCCCGGACCGGCAACCTGAAGCTGCAGCAGTGCCTACAGCACTTCGTGCGCGAGGAAGAGCTGGACGGTGACGAGAAACCGACATGCTCGAAGTGCGGCGTGAGACGGAAGTGCCTCAAATGGTTCACGGTGCAGAAGTTCCCTCAAGTGCTGGTCTTGCATCTCAAAAGGTTCTCCCCGACGGAGCGGTTCCGCGGCAAGCTGAGCGTGGTGGTGGAGTTCCCCCTGAGCGGCCTCGACATGTCGCCCTACGCCGCCGCGCGGTCCGGCGCGCCCGTCTACAACCTGTACGCCGTCAGCAACCACTCCGGTACAACGTACTCCGGCCACTACACGGCGTACTGCAAGCACCCGCACACCGGCGACTGGCACGAGTACAATGACTCTAGGGTAACGCCCATCAACCCGTCCAACGTGGTTTCGTCGGAGGCCTACGTGCTCTTCTATGAGCTTTCACGTACGTAG
Protein
MSLVSSSRLEGSSSSLSGSYRSTLTSSSSLDNPYCRPRSGSYATSTLRSYGDTVTEYRSRYSIDSKGDKKSLIEYSRTSRAPSVTDSDSGISSRHRSDRSESRSRDISTTRSESGKTLSDPPSRTKRNFSSSAFMSTAELYKLYSPSNYIPLTQRIQQQQKLQNQNYGEISRSKSISNDIGRPPAADPSRALRKARNSAIGTTSERTESRRYKDSSPTSGYTKRNSLTNGVRDSNGNELPSVPEMRKKFDPKMAVTKLPANESRYASRSNDERYLNQLKDCENGTVGYTKLRPKDDKPVPVHLPYVSRNGTCKWESGSSSSRSNSNSDLSINKTASESSISKYLHDKPNGASTVLTSKIPPDHLTSVKSQLDPNNPIGKILEKSTVIQVQNGDVDYAERKRIRNSPETVNKSKDNIKNDIEKQVKSQRHTSDFASYIQISQPIASGTSALKKIENHVNEEPVPTETRKSRAGLKYIDSEQENVSLNNEIESPSETGFENKTFEHENYLKKRSEKSEGDSKEEDGAKSMETSVESTLSELTEDSSPETPSTRRKLLDKEYDDVKGELAGGKSGPSGLRRSTDRSESLSESRNERQSSHTSGLNGLRNIGNTCFMNSVLQCLSNTKPLLEYVSEDKYCDDINTSLSCMKGALIKAFATVIKEVWRSGERDGVVNTTALKSQVQKFAPRFMGYSQQDAQEFLRYLLEGLHEDVNRVTVKPKPILTEIDDNLSDSAKAAEAWSRYLRMEDSRVGDIFVGQLKSTLRCTHCNHDSVTFDPFWDLSLPIPARTGNLKLQQCLQHFVREEELDGDEKPTCSKCGVRRKCLKWFTVQKFPQVLVLHLKRFSPTERFRGKLSVVVEFPLSGLDMSPYAAARSGAPVYNLYAVSNHSGTTYSGHYTAYCKHPHTGDWHEYNDSRVTPINPSNVVSSEAYVLFYELSRT

Summary

Similarity
Belongs to the peptidase C19 family.
Uniprot
A0A2W1BSW0   A0A194RIM6   A0A0L7LFB2  
Pubmed
28756777    26354079    26227816   
EMBL
KZ149962    PZC76297.1    KQ460152    KPJ17412.1    JTDY01001426    KOB73891.1    + More
Proteomes
UP000053240    UP000037510   
Pfam
PF00443   UCH
Interpro
IPR001394   Peptidase_C19_UCH        + More
IPR038765   Papain-like_cys_pep_sf       
IPR018200   USP_CS       
IPR028889   USP_dom       
SUPFAM
SSF54001   SSF54001       
ProteinModelPortal
A0A2W1BSW0   A0A194RIM6   A0A0L7LFB2  
PDB
3V6E     E-value=3.25492e-99,     Score=927

Ontologies

KEGG
101737508    K11833 ubiquitin carboxyl-terminal hydrolase 2 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal
GO
GO:0006511   GO:0016579   GO:0036459   GO:0045747   GO:0000287   GO:0004715   GO:0005634   GO:0007067   GO:0004713   GO:0016491   GO:0015930  

Topology

Length:
938
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00299
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  938
 
 

Population Genetic Test Statistics

Pi
209.208384
Theta
165.505086
Tajima's D
1.105247
CLR
0.414148
CSRT
0.682465876706165
Interpretation
Uncertain
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