Silkworm Genome Informatics Database

Gene

KWMTBOMO14035

Annotation

PREDICTED:_uncharacterized_protein_LOC105842300_[Bombyx_mori]

Location

Bomo_Chr23(+):16390893-16400092 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.904 PlasmaMembrane Reliability : 1.427

CDS

ATGTTTTCAATAACATCTTGTACATTTTTATGTGTTTTTTTTGTACTCTGGAGTCCGGAAACATGTGCATCAGACATACCACATCTGCTCCTGTACAGCCCAGGTGATGTTCAGTACACAGACGTCCTGGTTAAGAGAGTAAATGACAATTTGACCCTCATTTGTGAGCTGCAAGGGGACAACACAAAGAGGAGATATGTCTGGAACTATGTCGCTTCGGATCTGGGAAATGTCACAGATTTTAAAACACCATACACAGTGGACACATTAGCGCCGAGCAACAGGAGTACATTGTACAAAACAGAGCTCCAGATCTCGGACAGCGGTCATTACATGTGTTCGGCCCCACCATTCAGTGTTACCAAGTATATTGTTGTACAAAATAAAGGTGCTGTGGGCTGCGCCAGGGGGGCCCTCAGCTGCGGCTTCCGTTGCGTGCTGCCGGCCTACGTGTGCGACGGCCGCACGGACTGCGCCGACGCAGAAGACGAGCACCCCCTCATGTGCGGAGAGAACGTTTGCATGCGGTCGGACCGGCTGAACTGCTCGGACGGGCGCTGCGTGCCGGCCGCGGCGTGCTGCGGGGCGCCAGCCGCGCTGTGTCGCCAGCCGGCCTGTTGCAACGAGCACCCTTCCTACTCCAGGCTCGAGGGTCCTATTGAAGTGGAGTACCCTCAAGTGTTTGATGACAGACATGCTCCAGACGACTACGGCTTCATACAATCCACCATCTACACTGTGACCGCCTGCGCCTTGATCTTCATGATAGCGGTGGTGCTGCTGATATCGGCGATATGCAAGATGCACATGAAGCGGGCCGCCCTCCGGAGCTACGCCCACGCGGAGCGCGCCACCCGCCGCCACTACAGTGTCCACTACGCACAGACCCAGCGCTTCCCGCCGTGCTACGAGGCGTCGCGTCTGCTGGAGGACGGGCGGGCCGCCTCCCCCGCGCACTCCCCGCACGACTCGCCCGCCAGACAGAACCTGCAGTGCAATCCCGGATGCCCTCCGGCCGCTGAGCTGGAGACCAGACCCGGCTTCGGGCTGGCGAGTCTGTCAGCCATCTTCTCGTCTAGATACAGACAGGTCCCACTCCCCCCCGCCGAAGTGGAGATGAACGCGATCAGGGCCTCCTCGACCAGCTCCAGCATCCAAAACTACCGGAGCCCCACGTACTGCGACCTCCAAGAGGAGCTGTTCGCGAGCCCAGAGTCTCAGGCCACGGGCAGGGACCTCAACTACATGGCCGCCCCGCTGGAACTGTTCCGCAGACGAGCGAGGAGCTCGCTAGACCGACAGCGCCTGACGTTGCAGCTGGGCCGGTTCCAGTTGACGCTACCCTTCCGGGACCGGAGACCGGACACGCCCAACGTTTCTGAAGTCGACGACGAGGACACGTACACGCTCAACGGCAGGACCATCCGGCTGCTGGGCGCCGACCTGGAGAACTACCCGGTCGTTTCAGACGGCATCGCGAGGCCGCCGCCCTACGCGGAGGCGGTTCGCTACAAGCTCTTCGGGCCGCCGCCAGAGTACCTCAGCAGGGAAGCGCTGAATCTTAGGGTCGATATGGAGGCGAGGACCAACGTGGAGATGCCGCCGCGCTACGACGATCTAGCGTCGGGCGCCTCCTCCGACAACCAACCGCGAGCCCCGGAGAGTAACGGAGTCGCCCCCACCCTGAGCTCGGTCATCGACGACCTGCCGGATATCGACAATGACGCGCCCGGCACTGCCTCCTCTCTGGCGCCGCACTAG

Protein

MFSITSCTFLCVFFVLWSPETCASDIPHLLLYSPGDVQYTDVLVKRVNDNLTLICELQGDNTKRRYVWNYVASDLGNVTDFKTPYTVDTLAPSNRSTLYKTELQISDSGHYMCSAPPFSVTKYIVVQNKGAVGCARGALSCGFRCVLPAYVCDGRTDCADAEDEHPLMCGENVCMRSDRLNCSDGRCVPAAACCGAPAALCRQPACCNEHPSYSRLEGPIEVEYPQVFDDRHAPDDYGFIQSTIYTVTACALIFMIAVVLLISAICKMHMKRAALRSYAHAERATRRHYSVHYAQTQRFPPCYEASRLLEDGRAASPAHSPHDSPARQNLQCNPGCPPAAELETRPGFGLASLSAIFSSRYRQVPLPPAEVEMNAIRASSTSSSIQNYRSPTYCDLQEELFASPESQATGRDLNYMAAPLELFRRRARSSLDRQRLTLQLGRFQLTLPFRDRRPDTPNVSEVDDEDTYTLNGRTIRLLGADLENYPVVSDGIARPPPYAEAVRYKLFGPPPEYLSREALNLRVDMEARTNVEMPPRYDDLASGASSDNQPRAPESNGVAPTLSSVIDDLPDIDNDAPGTASSLAPH

Uniprot

A0A2A4K794 A0A2W1BX18 A0A194RHW2 A0A212EYA7 A0A3S2TQD7

Pubmed

28756777 26354079 22118469

EMBL

NWSH01000104 PCG79522.1 KZ149962 PZC76293.1 KQ460152 KPJ17418.1 + More
AGBW02011569 OWR46478.1 RSAL01000024 RVE52237.1

Proteomes

UP000218220 UP000053240 UP000007151 UP000283053

Pfam

PF00057 Ldl_recept_a

Interpro

IPR023415   LDLR_class-A_CS        + More
IPR036179   Ig-like_dom_sf
IPR013783   Ig-like_fold
IPR007110   Ig-like_dom
IPR002172   LDrepeatLR_classA_rpt
IPR036055   LDL_receptor-like_sf

SUPFAM

SSF48726 SSF48726 + More
SSF57424 SSF57424

Gene 3D

2.60.40.10 4.10.400.10

CDD

cd00112 LDLa

ProteinModelPortal

A0A2A4K794 A0A2W1BX18 A0A194RHW2 A0A212EYA7 A0A3S2TQD7

PDB

3M0C E-value=0.00240408, Score=99

KEGG

105842300 no KO assigned | (RefSeq) uncharacterized LOC105842300

GO

GO:0016021 GO:0005515 GO:0006508 GO:0045747 GO:0000287 GO:0004715 GO:0005634 GO:0007067 GO:0004713 GO:0016491 GO:0015930

SignalP

Position: 1 - 23, Likelihood: 0.996923

Length:

586

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.09374

Exp number, first 60 AAs:

0.36248

Total prob of N-in:

0.08074

outside

1 - 243

TMhelix

244 - 266

inside

267 - 586

Pi

251.949379

Theta

175.903401

Tajima's D

1.171445

CLR

0.231405

CSRT

0.701464926753662

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics