SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14028
Pre Gene Modal
BGIBMGA011359
Annotation
PREDICTED:_breast_cancer_type_2_susceptibility_protein_homolog_[Amyelois_transitella]
Full name
Glycogen [starch] synthase      
Location in the cell
Nuclear   Reliability : 4.102
 

Sequence

CDS
ATGGAAAAAACGGTAAAGGAAATTGAAGATTTTGAATTAATTTTACGAAACAAACGTAATAGAACACCAGTATTATACGGACACGATTTTCGCGATAGAGAACAGGCCAGCAAACCAAGGGACGTTATAAAGATTGTACAATCACAGATGAGAGCCATTCAGAAAGCTGATACGAATAATTTGACCAAAGTTGATAATACAACTAATAATTACTTTACGAAAAAGGAGTTTATCCCTGTGGCTGAGTTACCAGATTATCCCAAGGAATTACATGAAGAAAATATTTACCAATTTGAAACACAGTTTGTGTCTGATTCTCAACTGATTGCCTTAGTGCAGAATGCGGAGCATCCAGATACGAAAGTTTCAACACCAGAAAATATAACTCTTCATCACGTAATTGCCGAGATAGGCGACGGTAACACCACTGATACAGCAGACAATCACAGAGGAGTGCTAAGTAAGGAAGATAATAATGATAAGAGTTCACTCCTAAATGATTTAGAGGAGAGTGCGGAATCAATTGGTGTGAATGATGAGACAGACACTGTTGAAGTAAACGATAACATATTCAAAAGTCAAATATTTGAAATGGACAAAGTTGAAGTTTCCGAAACATTAGTGGCAGAAGAAAGCCGATCACCGAGTCCAGTGCTAAATTTTAAAAACAATAAAATACTGCCATTAGTGTTTGACCTGGAGAAGTTTGAAAGGTTTGAGAGAATAGCCTTTCCCATTGTCGAAGAAAACAAAGATCTAAACAGAGTCAAACATCTGATTAACTCTCAATTATCTGATGGAGAATTGAATATAGAAATCGAAGACAATCATATGTTCGTGTGTTTGGATAAAAAAAGTCCGATATTAAATATTGAAGACAAAATTGTTATGCCGACGACAGCATTAAATTATCTAAGGCAAAAAACAAATAGTTACATACAAGATGAAATATTATTTAGTAGCGATGAAGAAAGTGATAGAATGATTCAAGACTTACCTTTAACCTGCCCTTTTAAAACATCTACCTATGACAAAAATGATGTTTTAAACAAAAGTATGTATGTTGGATTCCAAACAGCCAGTAATAATCCCATACAAGTCTCTGAGGAGTCTTTTTGTAAAGCTAAGTCTATATTAAGCTTTGAAGACACAGACAAACTGAATTTCAATGAAATTGTTGAGGCCCGTGATGGTACGACGAACACGAATAAAGATGAGGATGAATTAAATAGGAATTCCGAAAATGTTGGCATTCTAGATATTGATATGGCCATAAATAATGATGATTCACTTAAGGTTTCCGGTAAAGCTGACAGCGATTATGTGCTGAAACCTAAGAAACGAAAGTACGACGGCTTTATAACGGCTAGTAACAAAAAAATTCAACTATCTAATAGTGCTTTACTGAGATGCAAAAAAGTATTCAAAGATATAGATCTGAATGAAGAATTTGATGAAAATTCGAATAATGGAAAGGATAAATTGAGCAATGTGTTTCATAATAACGAAAGTGATTTCAATGATAATGCCGACGATATAGTCATTGAGAAATCGAATTATCAAATTAAAGCAACAGAGTTGAATTTGGATTGCAATAAATCGAAACAGAGTTTTATGGAAGACTTGGAATCTGATTTGAATGACGAAAACATTATTAAAGAATTCGAGAACGTAGATATGACAATCGAAATTAATGATATTGTATCGAAGTATAACGAAAAAGAAAATTGTCATGTACAAGACTGTGTCAATAGAAAAAATGTTAAAAATAAACCAATGACAAATCATCAATCTAACATAATAAATTCTTTAGGCAGTGATTTTGTTGGCTTTAAAACTGCTAATAACATGATAATAGAAATTTCAAAAGAAGCATTACGTAAAACTAATGATGTGTTCAAAGACATTGATATTGGTGATAGGATTACAACTAATTCAGAATTTATAAAAAACAAAACTAAAAACATTGAAACACCAAATAAATTTTTTAAAAACGATCAGTTAAATACAGATTCTGCTGAGCCTCAAAAATGTATGACTAATAATACTGTTGGTATTTCCACTGGGAATCAGCCGTTGAGCAACACTCGGTTTGTTGGCTTCAAAACGGCTAACGACAGAAATATTACAATTAGCAGTCACTCACTAATTAAAAGTAAGGAAATATTCAAAGATATACAAGATTTAACGAATGAACGCGAAGAGAATACAAGCTTGGATGTTTTCAAAGGATTTAAAACGGCTAATAATAAAGTCGTGAAAGTATCCGAAGAATCATTAGTGAAAACGAAAAATATATTCAAAGATATAAATAATGAGAACGAACACCAAAACAAATTAGATCCGGTGAAAGAATTCCATGGAAGTAGGCTCTCGAAGAATTTCGAAGGTTTTAAAACAGCAAACAATAATGTGGTAAAAATATCAGAACGAGCCTTATCCAGGACGAAGAAGATTTTCGAGAAGATTTTCAATGCTAGTTCTGATGATAATCTCAATACTGGAAACGTAACACCCGAGCCGGATTTTAAAAGGTCGCCTAAAAACGACAAGGTCAATGTTGCGAACACATCTCTAGAGAAAGCGAAAATATTTGTGAAAAACCCACGAAATGCTAACATCATGGCCGAGGGAAGTACTGTAAATCGTTCTAAATCAGTCACTAAGACCAATTATAGAGAGCAAATCAAAGAAAACGTAAAAAATATTGACAGAGATGTCCTAAGAAATTCTTCAGTATACCCAGACGATTTGTTGTTTGCTGTACAAGAAGGTTTCAACGAAACACTGTACACGGAAGATTTTACAATATCAGCAACAAGATCAACAAGATCTACAAGTCCTATTTTGTTATGTCCCAAAGCTAAACGACTCAAATTCGAAGCTCCACACAAGAATCTTAAACATACACAAACTACAGAAATTATCGAACAAAAAAAACCACTTTTAAATTTCAAAAAAGATTATAAAAAAACGAAAACATACAAACTGAAAGATTTGTGTGATTTAGAAAAGAGATATGAAGAGAAATCTGTTGCAATTGATTACGACATGGATAATCTAATGGATTTCATTTTTGAAAAACAAAGAAATGATGTTACGGAAACTGTAGTGAATGTGGAACACGTCCAGAGAATGTTTTTGAGTTCGGTTAATGCGAAACTGATACCAAAGGGCTGGTTGGAAAATCACATAAAATTGATATTGTGGAAACTGTTGTCGTACGAAATTAAATTTCCTAACGTCATGGCGAATGTCTGTACTGTCGGCAATGTCATAGACCAATTGAAATATAGATACGACAAAGAGTTGTATAATGCTGAAAGGCCGGCCTTGAGGAAGATCTTGGAGAAAGACGATGTCCCTTCTAATACTTTGGTACTTTGTGTCGCCGGGATTTTTGTTGACGGAGTTGAAGTGAAAAGTGTCCCAAATACGAACAACATAGAACTGTTAGTGAGTGACGGTTGGTATTCGGTGAAGGCCACCACTGACCGGCTCCTGGCCCGGATGGTGCGGAGCGGTAAAATCGTGGTCGGAACCAAAGTGATGACCTGTGGGGCTGAGCTGTTGAATTGCGAGGGGGTGTCGCCTTGGGAGGACGTATCCTCAGTACGTCTAAAGCTGTCCGGAAACTCGACCAGTCGATGTCCCTGGTATGCGAGGCTGGGGCAGCACCGCGCGCGACCGGCCCGCGCCCTGCGGCACGTGGACGCGCAGGGCGGGCGGGTGGCGCGCCTCCGGGCCCACGTGGCCAGGGTCTACCCGCCGCTGTACGTCGAGAAGCTGGGAGACGGCACCACCGTGACTCGCTCGGAGCGTCTGGAGCAGCTGCAGCAGACGCGGCTCGAGGCGGCGCGCCAGGCGCTGGCCGAGGAGCTGCAGCGAGACGTGGAGCGCGCGTGCTGCGAGCAGGAGTCGCAAGATGTGGATTCTCAGGAGATGTCCTGCAGGAGAGATTCAGATAGCGGCTCCCAGCTGTATCGACAAATGAAGAGAAGTACAGACCCCGGCGAGTTCCGTAGCGACCTCACGGCGTCTCAAAACCACATTCTGCAGCAACACCTGGATTCGCGTCGAGATGCAGTCGTCGCCAGGTTGCAGAGCGAGTTCCGTGCGAGGGCGGAGGGCACCTTGGCGCGGAGGAATGTGGCAGTCGTACTGCGGGTCAGGGTCCTCGATCCAGGACCGGACTGCGCTACCAGAGGCACGCTGTCGGTGTGGAACCCCACGGAGGAGGTCCTGGAGCTGCTGCAGGAGGGGAACTCGATAGAAGTGACGAACGTCACACCAACAGCTGTCAGATATTCCGAAATCCAGCTCTCGGCCGGCAGGCAGTCTGCGTTCACGGCGTGTCGTCTGAAGGAGTCCACCGCGGCTCAGTTCCGGAGGAGGGCGTGCGCCCTGGACGAGCTGGTGCGGAGCCCGGCCGCGCAGACCCCGTACGGCGAGGTGGACACGGCCGGGCTCATAGTGCGAGTCGAACCTAAGACAACGGTTCTCAACAACACGGTGCACTTCCAAAACGTTTACTTGTCGGATTTCGAAAGGAACATTGTCAGTATCAACTTCTGGGGCGGCCTCGAAAAGTTCGGCTACGATAACCTCCTGGACACGGGACAGGTCGTGGCCTGCGTCAACGTGCAGAGGCGCGCGGGCAGCACCGCCCGAAGCATCCCCCAGTACAGGGCCACGGAGATCAGTTATTTCACGAAATCTCCCAAGATAGCGGACCTCAAAAAGTTAGTGGTAGAATTGAATGAAAAATTTAAATCTTGCAACATTCAACGTTTTTGCGAGGATTGCGTAGACGTTATAGAGAATAAAAAAAGGAAAAGTACTCGCAATGAAAATGTTACTCCATACAAGACTAGTGATGTAAATTTAACAAAGACAACGTCTGTTTCGACACCATTAACAGTAAATAAAAATGACTTCAAAAATTTAACAAATGAGTCGGACCGTGAGTCGCCATCGCCCAAAACGTTGTTGCGTAGGCAGCAGATCAAAGCGAAAATTGAAAAATTAAAAAGATACGGCGAACCTCCACCCCTGAACCCTATAACGATAGTGAACAAAACTACAAACGCAATGGCGGCGTACAGAAGTCCGGTCAATGTAGCCGGATCGAAAAAAAATATTGATTGTAGTAGTTTTAGTGATACTTCATCAGTCAGCAAGGCTAATGACAAAACTGTTGTTCCTGTTAAACTGAATTTTGATGTAAGCACGGAAGAGGGTGATCCGTTTGCAGAAGAGCTCGATCCCAGCTTACCGTTGAGTCTAGAATAG
Protein
MEKTVKEIEDFELILRNKRNRTPVLYGHDFRDREQASKPRDVIKIVQSQMRAIQKADTNNLTKVDNTTNNYFTKKEFIPVAELPDYPKELHEENIYQFETQFVSDSQLIALVQNAEHPDTKVSTPENITLHHVIAEIGDGNTTDTADNHRGVLSKEDNNDKSSLLNDLEESAESIGVNDETDTVEVNDNIFKSQIFEMDKVEVSETLVAEESRSPSPVLNFKNNKILPLVFDLEKFERFERIAFPIVEENKDLNRVKHLINSQLSDGELNIEIEDNHMFVCLDKKSPILNIEDKIVMPTTALNYLRQKTNSYIQDEILFSSDEESDRMIQDLPLTCPFKTSTYDKNDVLNKSMYVGFQTASNNPIQVSEESFCKAKSILSFEDTDKLNFNEIVEARDGTTNTNKDEDELNRNSENVGILDIDMAINNDDSLKVSGKADSDYVLKPKKRKYDGFITASNKKIQLSNSALLRCKKVFKDIDLNEEFDENSNNGKDKLSNVFHNNESDFNDNADDIVIEKSNYQIKATELNLDCNKSKQSFMEDLESDLNDENIIKEFENVDMTIEINDIVSKYNEKENCHVQDCVNRKNVKNKPMTNHQSNIINSLGSDFVGFKTANNMIIEISKEALRKTNDVFKDIDIGDRITTNSEFIKNKTKNIETPNKFFKNDQLNTDSAEPQKCMTNNTVGISTGNQPLSNTRFVGFKTANDRNITISSHSLIKSKEIFKDIQDLTNEREENTSLDVFKGFKTANNKVVKVSEESLVKTKNIFKDINNENEHQNKLDPVKEFHGSRLSKNFEGFKTANNNVVKISERALSRTKKIFEKIFNASSDDNLNTGNVTPEPDFKRSPKNDKVNVANTSLEKAKIFVKNPRNANIMAEGSTVNRSKSVTKTNYREQIKENVKNIDRDVLRNSSVYPDDLLFAVQEGFNETLYTEDFTISATRSTRSTSPILLCPKAKRLKFEAPHKNLKHTQTTEIIEQKKPLLNFKKDYKKTKTYKLKDLCDLEKRYEEKSVAIDYDMDNLMDFIFEKQRNDVTETVVNVEHVQRMFLSSVNAKLIPKGWLENHIKLILWKLLSYEIKFPNVMANVCTVGNVIDQLKYRYDKELYNAERPALRKILEKDDVPSNTLVLCVAGIFVDGVEVKSVPNTNNIELLVSDGWYSVKATTDRLLARMVRSGKIVVGTKVMTCGAELLNCEGVSPWEDVSSVRLKLSGNSTSRCPWYARLGQHRARPARALRHVDAQGGRVARLRAHVARVYPPLYVEKLGDGTTVTRSERLEQLQQTRLEAARQALAEELQRDVERACCEQESQDVDSQEMSCRRDSDSGSQLYRQMKRSTDPGEFRSDLTASQNHILQQHLDSRRDAVVARLQSEFRARAEGTLARRNVAVVLRVRVLDPGPDCATRGTLSVWNPTEEVLELLQEGNSIEVTNVTPTAVRYSEIQLSAGRQSAFTACRLKESTAAQFRRRACALDELVRSPAAQTPYGEVDTAGLIVRVEPKTTVLNNTVHFQNVYLSDFERNIVSINFWGGLEKFGYDNLLDTGQVVACVNVQRRAGSTARSIPQYRATEISYFTKSPKIADLKKLVVELNEKFKSCNIQRFCEDCVDVIENKKRKSTRNENVTPYKTSDVNLTKTTSVSTPLTVNKNDFKNLTNESDRESPSPKTLLRRQQIKAKIEKLKRYGEPPPLNPITIVNKTTNAMAAYRSPVNVAGSKKNIDCSSFSDTSSVSKANDKTVVPVKLNFDVSTEEGDPFAEELDPSLPLSLE

Summary

Description
Transfers the glycosyl residue from UDP-Glc to the non-reducing end of alpha-1,4-glucan.
Catalytic Activity
[(1->4)-alpha-D-glucosyl](n) + UDP-alpha-D-glucose = [(1->4)-alpha-D-glucosyl](n+1) + H(+) + UDP
Similarity
Belongs to the glycosyltransferase 3 family.
EC Number
2.4.1.11
Pfam
PF00634   BRCA2        + More
PF09104   BRCA-2_OB3
PF09103   BRCA-2_OB1
PF00096   zf-C2H2
PF09169   BRCA-2_helical
PF05693   Glycogen_syn
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR002093   BRCA2_repeat       
IPR036315   BRCA2_hlx_sf       
IPR015525   BRCA2       
IPR015188   BRCA2_OB_3       
IPR015252   BRCA2_hlx       
IPR015187   BRCA2_OB_1       
IPR012340   NA-bd_OB-fold       
IPR015205   Tower_dom       
IPR008631   Glycogen_synth       
SUPFAM
SSF81872   SSF81872        + More
SSF57667   SSF57667       
SSF50249   SSF50249       
PDB
1IYJ     E-value=2.35738e-46,     Score=474

Ontologies

Topology

Length:
1763
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1763
 
 

Population Genetic Test Statistics

Pi
224.448221
Theta
191.597255
Tajima's D
0.866702
CLR
0.182544
CSRT
0.624268786560672
Interpretation
Uncertain
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