Silkworm Genome Informatics Database

Gene

KWMTBOMO14021

Annotation

Homeobox_protein_DBX1-B_[Papilio_xuthus]

Location

Bomo_Chr23(+):16098299-16100088 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.315 Nuclear Reliability : 1.637

CDS

ATGATGGGGAACCCCTGGCCGATCGCGAAGCCCATCGCCAGCCGACCGGTTCCAGTACAACACCAGCATCTGCAGCACCTCCTAGCGCACTGCCACCATCCCTACTTGGCCGTGAGACCGGCACAGGCCCACACCCAAGTGTTTCCCCTGCCGGGGGGCTTCCCCTGGGCCCACAGTTCTAGAGGTACGTTCAAGGACGCGCTGGCCTACAGTAATCAGGCCATAACAGCCAACTTCCTAACAGTGTCTGAATAA

Protein

MMGNPWPIAKPIASRPVPVQHQHLQHLLAHCHHPYLAVRPAQAHTQVFPLPGGFPWAHSSRGTFKDALAYSNQAITANFLTVSE

Uniprot

A0A194PU78 A0A3S2LDU4 A0A2A4IZ83 A0A2W1BJ86 B4N329

Pubmed

26354079 28756777 17994087

EMBL

KQ459593 KPI96309.1 RSAL01000031 RVE51596.1 NWSH01004463 PCG65071.1 + More
KZ150262 PZC71723.1 CH964062 EDW78768.2

Proteomes

UP000053268 UP000283053 UP000218220 UP000007798

Pfam

PF00046 Homeodomain

Interpro

IPR000047   HTH_motif        + More
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf
IPR001356   Homeobox_dom
IPR017970   Homeobox_CS

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A194PU78 A0A3S2LDU4 A0A2A4IZ83 A0A2W1BJ86 B4N329

KEGG

101737650 no KO assigned | (RefSeq) homeobox protein DBX1-B

GO

GO:0006355 GO:0043565 GO:0005634 GO:0003677

Subcellular location

Nucleus

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.004

Exp number, first 60 AAs:

0.00271

Total prob of N-in:

0.19011

outside

1 - 84

Pi

260.309677

Theta

154.896925

Tajima's D

2.023715

CLR

1.224858

CSRT

0.888555572221389

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics