SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14020
Pre Gene Modal
BGIBMGA011354
Annotation
PREDICTED:_uncharacterized_protein_LOC106130973_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.543
 

Sequence

CDS
ATGTTGAAGACTATACAGAACTTGTGCTACAATAAGACTTCCAATTTCAACATGACGTCACCGTTCTTGGTCGACAACATACTGCATCAGCAGAAAAGCGATTTCCAGAGCCAGTATTTAAATCAGCAGCTGGAGAACTACGTGCTGCAGCGTCAGAGCTATTCCCGGGAGGATTCGCCGGACGCGGACGAGCCGAAATGCGACGCGGACGATGAGAACCGGGAGGATTGCGCAGAAGAAAACAAAATCGAACTGGACGAGGACTCGAAAAGTAACGACGAATGTTATACAAACGTTAAAAATGAGTTTTACAATAACGATTACTACAACCAGGAGCCCAGGGCCGAGAAGGAGGTTCTATCAGTCCCGAGTCTGGCCAGACGCTGCCACGTATGCGGTTCAGACTGCCCGCCATTCGCGTGCAGGAAATCTGGTATAAGACGCTTGGAGGAACTAGAGAAGCGGTTCAATTTGAACAGTTACAACGAGAATTCTGGCGACGAAGCTGACAAAGAGAAGAGTTACAACACCGAGGAGATGGTCCGCGGCTGCGAGGAGTACAGCAGTGAGCAGAAGAAGCCCTTATTGAAATTCAGTGTTAGTGCTATTCTGGGTGATCGCGGGGAAGGCATCGGAAAAAATAGCAGCATCGGCGGTGAGTGA
Protein
MLKTIQNLCYNKTSNFNMTSPFLVDNILHQQKSDFQSQYLNQQLENYVLQRQSYSREDSPDADEPKCDADDENREDCAEENKIELDEDSKSNDECYTNVKNEFYNNDYYNQEPRAEKEVLSVPSLARRCHVCGSDCPPFACRKSGIRRLEELEKRFNLNSYNENSGDEADKEKSYNTEEMVRGCEEYSSEQKKPLLKFSVSAILGDRGEGIGKNSSIGGE

Summary

Pfam
PF00046   Homeodomain
Interpro
IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR020479   Homeobox_metazoa       
IPR000047   HTH_motif       
IPR009057   Homeobox-like_sf       
SUPFAM
SSF46689   SSF46689       

Ontologies

Topology

Subcellular location
Nucleus  
Length:
220
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00189
Exp number, first 60 AAs:
0.00189
Total prob of N-in:
0.11410
outside
1  -  220
 
 

Population Genetic Test Statistics

Pi
195.038272
Theta
177.339109
Tajima's D
0.219733
CLR
2.081632
CSRT
0.422978851057447
Interpretation
Uncertain
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