Silkworm Genome Informatics Database

Gene

KWMTBOMO14017

Pre Gene Modal

BGIBMGA011353

Annotation

PREDICTED:_GTPase-activating_protein_CdGAPr_[Bombyx_mori]

Location

Bomo_Chr23(+):15986369-16036239 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.047

CDS

ATGACGCAGTGCGCGACCTTCCACAGGTCGGTGCGATTCAGTTCAGATTCCCGAAGCTCGACGCGGCACACGGCAGACCTAGAATGCAAGAGAGAAAACTCTGGTTCCACGTCGCTGACGGCGCTGGCCCCGACGCCCGTCTCGCAGGGCAGCATGAGCCAGTCCGCGCCGGCCGCTGCCAACACCTTCGACCTCGAGTCGCCGACGGGCGGGGGCGGCGCCTGCCGGTTCCCGAAGCTGGAGGAGTGCGCGCATTTCCACTACGAGCGGGTCGCGCTGGGCGGCCTGGCGCTGCTGGCGCTGCCGGGCGACGAGCGGGCCGCGGACTCCGGCGACGAAGGATGGATCTGCATACAAGTCCGCTCGCACGTCAGCTCCCCTCAGGAGTCTGAGGGTCGACAGTGGACCCTCATGAGGAACAGGGACAACTTGCTACAGTTGGACGACTTACTACACAGGTGCATCTACGACCGCAAAGTGTCCGGGCTGCCCAACCTGACGGAAAAGCTGTCGGGCCCGCTGCCCCCGGAGGAGGAATACCATCGGCTGATAGCTGACTACCTGCACCACCTGTCCATCATAGCCGACGACTCCATCAACTGCGGGCCCGTGCTTTACTGGATGCAGATGGACAATAAGGGTCAGCGGCTGCTGGTCGCCAACGAGGACTCCAGCTCCATCAACACCCCGGCCGTGGCCGCCGCCTACTCCGTCAGGAAGTACGTTTCGCAGGCTCGAGATGAAATCAGCTTTGAAGTTGGCGACATGATATCCATCATCGACATGCCAGGTCCGCAGGAATCGGTGTGGTGGCGCGGGAAGCGCGGGTTCCGGGTCGGCTTCTTCCCGCGCGCCTGCGTCGCTGTCATCGGGGACAAGGTGCCGCGCCACATGACGCAGCCGCCCCCCATCGTCGGCTCGGTTGCTATGGCGCCCATCAAGCCGGTACTCCGAAAGCACGGGAAGCTCATATCGCTTTTCCGGAGCTTCATACTGTCCCGACCCTCGCGCCGCAGCCTCAAGCAGCAAGGCATCCTGAAGGAGCGGGTGTTCGGCTGCGACCTCGGGGAGCACCTGCTGAACTGCGGACACGACGTACCCGTGGTGCTGGTGGAGTGCGCCGAGGCCATCGAGAGCGCAGGTGCAGTGGACGGCGTGTACCGGCTGTCGGGCGGCGCCGGCCTCACGCAGCGCCTGCGGGACGCCTTCGACGCGGGCCGGCCCCCCGACCTGCGCCCCGCCGCCGCCACCGACCCGCACGCCGTGCCCAGCCTGCTCAAGATGTACTTCAGGGAACTGCCCAACCCGCTGTGCACGTACCAGCTGTACGAGAGCTTCGTGCGCGCCGTGCAGCAGCCGGACGAGGCGAGCAGGCTGGCCGCCGTGCGTGACACCGTGGTCAAGCTGCCGCCGCCGCACTTCCGGACCATGGCGTACCTCATGCGCCACCTGCGGCGCGTGTCGCTGCAGAGCGCCAGCACCGGCATGACGGCGCGCAACGTGGCCATCGTGTGGGCGCCCAACCTGCTCCGAGCGCCGCGCCCGCAGCACGCGCTGCACGGAGTCGCCGTGCAGGCCGTGGTCACTGAGTTCCTGATCTGCTACGCGGAGGAGCTGTTCGCGCGGGAGCAGGGAGCCGCCCCCCCCAGCCCGGAGCAGACACCAGAGCCGGAGCCAGCGATCGAGTTCAGGGGGATGGAGCCGGTCCGAAGGCCCAAGAGTCTGCCTGTCACGCAGCACACCAAACTGCTGAGCTTGGAGGAAGCACGTCGCCGCGGCCGTCCCCCCGCGCCCCACTCCGCACCCCCCGTGCCACCCGCCGACCCCACTCCCGTTCTGCGGCCGCAAGGGGACGTTAAGCCCAAGTATATCGAGGTCGGCTCCGGACCCAACAACCTGCCGCAGTACCACACCGTGCTGGAGCTGCCCGCCACGGGCAGGAAGCGCGGCGTGAAGCGGTCCCCGTCCGGCTGGCGCGGCATCTTCACCCGGAACAAGCAGCGGCCGGCGGACACCCCCACCCTCGCCATGGAGGAGAGCAGTGCCATCAAGTCGTGCGAGTCGCTCTCGGACGGCGAACCGGCGGCGCCCGGGGACCGCCCCGCGACCCCCGCCCCCCGGCAGCACGCGCGCTCGTCGTCGTGCGACTCGTACTTCGAGCCGTGGCAGGCCGAGCTGGCGGGCATGCGGCTCCGCCTGTGCGCCCAGGAGCGGGACCAGCACATCTTCAGCGAGGAGGACGACACCGCGGTCAGGCAGCAGGAGGAGTCCGCGAGCTCGAGCCCGCCGGAGTCCGGCCTGTCCAGCGTCGAGCCCAGCCCGAGGCGGAGTCTCCGAGTGGACATCAAGGCTGCCAACGAGTACGCCAACAAGTCCGACTCCGCGGAGCACCTGCAGTACATAGACGCGGAGTCGCCCAGACGAGCCCCCCCGGAGAAGCGCCTGCATCAGAACACGCACGACCAAGTCAAGAGAGTGTGCAGGGACCGCGCCGACCCACGCGACCCCCGCAACGAGCTGCCGGAAGATCCCCCGCGCAACCCCCCTCCCTGCATCCCAGACGAACCCCCGCGCGCGCCCTCCGCCGCGCCGCCCGCCTCCGCGGTGAAGCTGAGAGAGCGGAGCTCGCCCCGGAGGATGAGGAATGGCAGGTACAGCGGGGTGCACCACTGCTCCGACGACAGGAACGTCACCATCAACCGCCTCAGCTGGCACGGGAAGGACGGACATTCGACCCTCATTAAAATCGACTGGCCCATCGAGAATATATCTGTTGGCAACCTCACGACCAGCACCCTCAACTCCAGCCCCCTCACCCCGACCACCCCCCTGTACGGCCCGCTGGAGAGCGACTCCGAGCACTCGGACTCCAACAAGCGCACCATCAGGGTTAGTGACGGCGCCTGCGAGGGGTGCGTTGACGAGAAGTGCCTCAAGTGTGAGCTGCGCGGCGCAGAGCGCGGGCGGACCCACGCCAAGGTCATGACCTCCTCGCACGAGAGCTCCTCCAGCTACTCCAACAGCCTCCAGCAGGACGAGCTGTACGAGTGCTGCACGCGGCCCGACTACATTAACCTACAGTCTTCCAGCACCAGTAAGAGCTCGCCGGGCTCTCCCCTGAAGAGTCCTTTAAAATCAACAATCAGCATCACGTTCAGATCCCCCACCAGAGACAGCGACGGAGCTGAAGGCGCCTCAAGCGATAGCAGAGACTCGGTGTACGAAGACATCGATCTCGAGAAGAACCTGTCCATAGTGGAGGACGCGCCCGTGCCGCAGAAGGACGCCAGCCTGCCCACGCAGCAGGCCTGCCAGCCCCAGGACTTCGTTCAGGACTTGATCATCTTAGAGACGCCGCTAGAGACACACTTCGACGCCGACCTGTACAGCCAGGTTAAGTTCTTCAAACAGAGCATCGAGGAGGTGAACGCGCTGGTGTCGGACGCGCCCGTCGCGGACCGGCACTACGAGAACGTGCGCTTCCAACCCGCCACCAACGACTACGAGAACATCAACGTGCGCGATGCGGTCGACAGCAGGCTGGGAACCGACGAGGGGAACGACGACCTCGCCCCCCATACTGAGAACGGCAACGTGGATGAATCCAAAAACTTAAACGTCAGAGAGTTGGCCGTCAGATTCGAGAGTCCGACAGAGCAGAGGCAGGCCTTCACCTTCCAGAAGTTCAAAGCCGAAATCAAATATCCCAGCCTAGAGCGAGAAGAGCCCCCGGGGACGCGCCGGCCCCCCGGGTCGGGCCGCCTGTCCCGGGGGGCCGGCAACGCTCGCTCGCTGGACGAAAGCGCTTTCACGAAAGAGTTCGGCGACAGAACGTACGTCGACCGAAGGAAAAGCTTAGAAATGAACTTGAAGAAGAAACTGCCCGATCTGAACTTGAACATCCAAGAAGTTGAAGCGAAGGGCGGCACCACGCCCGCCACCGAGAACAAAATGTCCTTAGTGCAGCGCTTCCATGAGAAGAGGAAAACGGACATCAAAACCCTGATCGGAGTGGACACGGAGAGGAAGCTCAGCAGGGAGCGGATAGAGAAGTACAAGGAGGAGCGGCGGATGTTCCTCCGCGAGAAGTACAGCTCGCAGTCGTTCCGCAGCAGCCCCGAGCAGCTCACGAGGATCAAGATCAAAAAAGACGACTGCAGGATAGACGACCTCCCGAAGTTCGAGAGGAGAAACACCGTGGACTTGGGTCAGAGGATGAGGTACAGCCTCGCCAGGGGCTCGCCCGACCCGGCGCTACCCGCGGCGCCACCATCCCCAGAAGACAAACTGTCTCCGCACTCCATCCGGGACATGGCGGCCCTGTTCGAACACAAGTCGCAGCGCACGGGCTGA

Protein

MTQCATFHRSVRFSSDSRSSTRHTADLECKRENSGSTSLTALAPTPVSQGSMSQSAPAAANTFDLESPTGGGGACRFPKLEECAHFHYERVALGGLALLALPGDERAADSGDEGWICIQVRSHVSSPQESEGRQWTLMRNRDNLLQLDDLLHRCIYDRKVSGLPNLTEKLSGPLPPEEEYHRLIADYLHHLSIIADDSINCGPVLYWMQMDNKGQRLLVANEDSSSINTPAVAAAYSVRKYVSQARDEISFEVGDMISIIDMPGPQESVWWRGKRGFRVGFFPRACVAVIGDKVPRHMTQPPPIVGSVAMAPIKPVLRKHGKLISLFRSFILSRPSRRSLKQQGILKERVFGCDLGEHLLNCGHDVPVVLVECAEAIESAGAVDGVYRLSGGAGLTQRLRDAFDAGRPPDLRPAAATDPHAVPSLLKMYFRELPNPLCTYQLYESFVRAVQQPDEASRLAAVRDTVVKLPPPHFRTMAYLMRHLRRVSLQSASTGMTARNVAIVWAPNLLRAPRPQHALHGVAVQAVVTEFLICYAEELFAREQGAAPPSPEQTPEPEPAIEFRGMEPVRRPKSLPVTQHTKLLSLEEARRRGRPPAPHSAPPVPPADPTPVLRPQGDVKPKYIEVGSGPNNLPQYHTVLELPATGRKRGVKRSPSGWRGIFTRNKQRPADTPTLAMEESSAIKSCESLSDGEPAAPGDRPATPAPRQHARSSSCDSYFEPWQAELAGMRLRLCAQERDQHIFSEEDDTAVRQQEESASSSPPESGLSSVEPSPRRSLRVDIKAANEYANKSDSAEHLQYIDAESPRRAPPEKRLHQNTHDQVKRVCRDRADPRDPRNELPEDPPRNPPPCIPDEPPRAPSAAPPASAVKLRERSSPRRMRNGRYSGVHHCSDDRNVTINRLSWHGKDGHSTLIKIDWPIENISVGNLTTSTLNSSPLTPTTPLYGPLESDSEHSDSNKRTIRVSDGACEGCVDEKCLKCELRGAERGRTHAKVMTSSHESSSSYSNSLQQDELYECCTRPDYINLQSSSTSKSSPGSPLKSPLKSTISITFRSPTRDSDGAEGASSDSRDSVYEDIDLEKNLSIVEDAPVPQKDASLPTQQACQPQDFVQDLIILETPLETHFDADLYSQVKFFKQSIEEVNALVSDAPVADRHYENVRFQPATNDYENINVRDAVDSRLGTDEGNDDLAPHTENGNVDESKNLNVRELAVRFESPTEQRQAFTFQKFKAEIKYPSLEREEPPGTRRPPGSGRLSRGAGNARSLDESAFTKEFGDRTYVDRRKSLEMNLKKKLPDLNLNIQEVEAKGGTTPATENKMSLVQRFHEKRKTDIKTLIGVDTERKLSRERIEKYKEERRMFLREKYSSQSFRSSPEQLTRIKIKKDDCRIDDLPKFERRNTVDLGQRMRYSLARGSPDPALPAAPPSPEDKLSPHSIRDMAALFEHKSQRTG

Uniprot

A0A212EWP4 A0A3S2NI23 A0A194PS90

Pubmed

22118469 26354079

EMBL

AGBW02011924 OWR45905.1 RSAL01000031 RVE51590.1 KQ459593 KPI96306.1 + More

Proteomes

UP000007151 UP000283053 UP000053268

Pfam

PF07653 SH3_2 + More
PF00620 RhoGAP

Interpro

IPR036028   SH3-like_dom_sf        + More
IPR001452   SH3_domain
IPR000198   RhoGAP_dom
IPR008936   Rho_GTPase_activation_prot

SUPFAM

SSF50044 SSF50044 + More
SSF48350 SSF48350

Gene 3D

1.10.555.10

ProteinModelPortal

A0A212EWP4 A0A3S2NI23 A0A194PS90

PDB

3IUG E-value=2.75031e-51, Score=516

KEGG

101737509 K20647 Rho GTPase-activating protein 32 | (RefSeq) GTPase-activating protein CdGAPr

GO

GO:0007165 GO:0005515 GO:0043248 GO:0006606 GO:0008565 GO:0005488 GO:0016020 GO:0004713 GO:0016491 GO:0015930

Length:

1450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00891999999999996

Exp number, first 60 AAs:

0.00022

Total prob of N-in:

0.00044

outside

1 - 1450

Pi

216.222119

Theta

166.888684

Tajima's D

0.648937

CLR

0.948466

CSRT

0.555272236388181

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics