Gene

KWMTBOMO14010

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr23(+):15863822-15865217      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.213 Nuclear   Reliability : 1.505

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCTTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGTTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGCCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGATGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGACCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGAAGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCTCGTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCFPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLAISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVADDFLHRFKLSDDIRELLRPKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVREARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPS

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   U4UGQ8   X1WQI9   A0A139W8G9   A0A1B6MLS9   J9KRU7   A0A023EYS8   K7IN67   X1WNI2   J9LC21   X1WK15   A0A2S2NJB5   A0A087THU2   V5GNJ2   A0A2S2P6H1   A0A1Y1MZU1   A0A2S2QQB9   J9LR29   T1ID59   A0A0L7L9V8   J9LFC9   A0A087U3K8   A0A0L7K4J3   X1X0M4   J9LVT4   A0A0J7K0R9   A0A2S2PPK8   J9LHE0   A0A1Y1K0C8   J9LPH9   A0A0L7LN74   A0A2S2QEE0   A0A0L7KVB3   A0A2S2PJ52   X1WVL6   A0A087T3W0   A0A224XB44   A0A224X6Q4   A0A0L7L3F7   J9KKL6   A0A087UGF5   A0A2S2PXP7   A0A182FPZ5   A0A2J7PP17   J9KR26   J9MAR0   A0A139WA11   T1ICH1   A0A2S2PXP8   J9MAC6   A0A2S2PJG2   A0A2J7PRP5   A0A087UCW3   X1WLB2   A0A1B6C2V8   T1I054   A0A224XJI0   J9KPF1   A0A2S2N6Q7   A0A2G3AQH2   X1WX08   J9LNE5   A0A069DZL8   A0A352X8G4   A0A2S2NH02   A0A2J7R7D0   A0A2S2N960   A0A224X6T4   A0A0J7K503   A0A023EZE6   A0A2S2QDN9   J9JWG6   J9L3W3   A0A2S2PEZ9   A0A2M4AQV0   A0A2M4AQK3  

Pubmed

10333566    26354079    10380107    28004739    23537049    18362917    + More
19820115    25474469    20075255    26227816    29089032    26334808    30148503   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    GEBQ01004157    JAT35820.1    GGMS01012398    MBY81601.1    KB632143    ERL89075.1    ABLF02022418    KQ973342    KXZ75569.1    GEBQ01003077    JAT36900.1    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    GBBI01004395    JAC14317.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02012584    ABLF02013765    ABLF02024884    GGMR01004661    MBY17280.1    KK115285    KFM64681.1    GALX01005299    JAB63167.1    GGMR01012189    MBY24808.1    GEZM01021868    JAV88847.1    GGMS01010725    MBY79928.1    ABLF02025082    ABLF02039175    ABLF02041809    ACPB03027378    JTDY01002082    KOB72150.1    ABLF02023911    KK118005    KFM71947.1    JTDY01011738    KOB53653.1    ABLF02065839    ABLF02003241    ABLF02003242    ABLF02025904    LBMM01018021    KMQ83899.1    GGMR01018716    MBY31335.1    ABLF02014934    ABLF02014939    ABLF02017810    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    JTDY01000526    KOB76804.1    GGMS01006359    MBY75562.1    JTDY01005246    KOB67202.1    GGMR01016297    MBY28916.1    ABLF02042385    KK113281    KFM59799.1    GFTR01008262    JAW08164.1    GFTR01008279    JAW08147.1    JTDY01003188    KOB69997.1    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    KK119692    KFM76444.1    GGMS01000479    MBY69682.1    NEVH01023280    PNF18085.1    ABLF02003895    ABLF02006045    ABLF02035991    ABLF02066257    ABLF02037715    KQ971729    KYB24751.1    ACPB03022356    GGMS01001094    MBY70297.1    ABLF02007779    ABLF02007782    ABLF02050375    GGMR01016905    MBY29524.1    NEVH01021955    PNF19000.1    KK119261    KFM75202.1    ABLF02042518    ABLF02057746    GEDC01029594    JAS07704.1    ACPB03000870    GFTR01008257    JAW08169.1    ABLF02041767    GGMR01000226    MBY12845.1    MCIT02004487    PHT96476.1    ABLF02043963    ABLF02001804    ABLF02035179    ABLF02062794    GBGD01000415    JAC88474.1    DNOY01000259    HBE18313.1    GGMR01003864    MBY16483.1    NEVH01006736    PNF36716.1    GGMR01001088    MBY13707.1    GFTR01008261    JAW08165.1    LBMM01014024    KMQ85369.1    GBBI01004571    JAC14141.1    GGMS01006655    MBY75858.1    ABLF02030739    ABLF02019661    GGMR01015412    MBY28031.1    GGFK01009846    MBW43167.1    GGFK01009732    MBW43053.1   

Proteomes

UP000053268    UP000030742    UP000007819    UP000007266    UP000002358    UP000054359    + More
UP000015103    UP000037510    UP000036403    UP000069272    UP000235965    UP000224522   

PRIDE

Q93137    Q9BPQ0    Q9XXW0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF14291   DUF4371
PF05699   Dimer_Tnp_hAT
PF16211   Histone_H2A_C
PF00125   Histone
PF07727   RVT_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR025398   DUF4371       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF47113   SSF47113       

Gene 3D

3.60.10.10     1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A1B6MIM7   A0A2S2QV22   U4UGQ8   X1WQI9   A0A139W8G9   A0A1B6MLS9   J9KRU7   A0A023EYS8   K7IN67   X1WNI2   J9LC21   X1WK15   A0A2S2NJB5   A0A087THU2   V5GNJ2   A0A2S2P6H1   A0A1Y1MZU1   A0A2S2QQB9   J9LR29   T1ID59   A0A0L7L9V8   J9LFC9   A0A087U3K8   A0A0L7K4J3   X1X0M4   J9LVT4   A0A0J7K0R9   A0A2S2PPK8   J9LHE0   A0A1Y1K0C8   J9LPH9   A0A0L7LN74   A0A2S2QEE0   A0A0L7KVB3   A0A2S2PJ52   X1WVL6   A0A087T3W0   A0A224XB44   A0A224X6Q4   A0A0L7L3F7   J9KKL6   A0A087UGF5   A0A2S2PXP7   A0A182FPZ5   A0A2J7PP17   J9KR26   J9MAR0   A0A139WA11   T1ICH1   A0A2S2PXP8   J9MAC6   A0A2S2PJG2   A0A2J7PRP5   A0A087UCW3   X1WLB2   A0A1B6C2V8   T1I054   A0A224XJI0   J9KPF1   A0A2S2N6Q7   A0A2G3AQH2   X1WX08   J9LNE5   A0A069DZL8   A0A352X8G4   A0A2S2NH02   A0A2J7R7D0   A0A2S2N960   A0A224X6T4   A0A0J7K503   A0A023EZE6   A0A2S2QDN9   J9JWG6   J9L3W3   A0A2S2PEZ9   A0A2M4AQV0   A0A2M4AQK3  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0046983   GO:0016021   GO:0046982   GO:0000786   GO:0003677   GO:0005634  

Subcellular location

Chromosome  
Nucleus  

Length:

324

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0768

Exp number, first 60 AAs:

0.05637

Total prob of N-in:

0.07678

outside

1  -  324

 

 

Pi

12.627802

Theta

19.776742

Tajima's D

1.244114

CLR

0.687765

CSRT

0.731713414329283

Interpretation

Uncertain